Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26745

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26740 and AO353_26745 are separated by 178 nucleotidesAO353_26745 and AO353_26750 are separated by 88 nucleotides AO353_26740: AO353_26740 - choline dehydrogenase, at 5,853,991 to 5,855,643 _26740 AO353_26745: AO353_26745 - MFS transporter, at 5,855,822 to 5,857,444 _26745 AO353_26750: AO353_26750 - serine 3-dehydrogenase, at 5,857,533 to 5,858,966 _26750 Position (kb) 5855 5856 5857 5858Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5854.901 kb on - strand, within AO353_26740at 5854.901 kb on - strand, within AO353_26740at 5854.901 kb on - strand, within AO353_26740at 5854.901 kb on - strand, within AO353_26740at 5854.901 kb on - strand, within AO353_26740at 5854.901 kb on - strand, within AO353_26740at 5854.901 kb on - strand, within AO353_26740at 5854.902 kb on + strand, within AO353_26740at 5854.902 kb on + strand, within AO353_26740at 5854.903 kb on - strand, within AO353_26740at 5854.903 kb on - strand, within AO353_26740at 5854.976 kb on - strand, within AO353_26740at 5854.976 kb on - strand, within AO353_26740at 5854.976 kb on - strand, within AO353_26740at 5854.981 kb on + strand, within AO353_26740at 5854.981 kb on + strand, within AO353_26740at 5854.981 kb on + strand, within AO353_26740at 5854.981 kb on + strand, within AO353_26740at 5854.982 kb on - strand, within AO353_26740at 5855.072 kb on - strand, within AO353_26740at 5855.133 kb on + strand, within AO353_26740at 5855.227 kb on + strand, within AO353_26740at 5855.228 kb on - strand, within AO353_26740at 5855.228 kb on - strand, within AO353_26740at 5855.228 kb on - strand, within AO353_26740at 5855.448 kb on - strand, within AO353_26740at 5855.533 kb on - strandat 5855.533 kb on - strandat 5855.533 kb on - strandat 5855.533 kb on - strandat 5855.615 kb on + strandat 5855.615 kb on + strandat 5855.615 kb on + strandat 5855.641 kb on + strandat 5855.688 kb on - strandat 5855.725 kb on + strandat 5855.726 kb on - strandat 5855.795 kb on + strandat 5855.795 kb on + strandat 5855.796 kb on - strandat 5855.796 kb on - strandat 5855.796 kb on - strandat 5855.796 kb on - strandat 5855.796 kb on - strandat 5855.796 kb on - strandat 5855.796 kb on - strandat 5855.799 kb on + strandat 5855.799 kb on + strandat 5855.799 kb on + strandat 5855.799 kb on + strandat 5855.800 kb on - strandat 5855.800 kb on - strandat 5855.800 kb on - strandat 5855.927 kb on + strandat 5855.928 kb on - strandat 5856.101 kb on + strand, within AO353_26745at 5856.101 kb on + strand, within AO353_26745at 5856.101 kb on + strand, within AO353_26745at 5856.102 kb on - strand, within AO353_26745at 5856.102 kb on - strand, within AO353_26745at 5856.102 kb on - strand, within AO353_26745at 5856.102 kb on - strand, within AO353_26745at 5856.102 kb on - strand, within AO353_26745at 5856.102 kb on - strand, within AO353_26745at 5856.102 kb on - strand, within AO353_26745at 5856.167 kb on + strand, within AO353_26745at 5856.167 kb on + strand, within AO353_26745at 5856.168 kb on - strand, within AO353_26745at 5856.168 kb on - strand, within AO353_26745at 5856.263 kb on + strand, within AO353_26745at 5856.263 kb on + strand, within AO353_26745at 5856.264 kb on - strand, within AO353_26745at 5856.264 kb on - strand, within AO353_26745at 5856.264 kb on - strand, within AO353_26745at 5856.264 kb on - strand, within AO353_26745at 5856.264 kb on - strand, within AO353_26745at 5856.264 kb on - strand, within AO353_26745at 5856.264 kb on - strand, within AO353_26745at 5856.374 kb on + strand, within AO353_26745at 5856.375 kb on - strand, within AO353_26745at 5856.375 kb on - strand, within AO353_26745at 5856.375 kb on - strand, within AO353_26745at 5856.548 kb on - strand, within AO353_26745at 5856.617 kb on + strand, within AO353_26745at 5856.617 kb on + strand, within AO353_26745at 5856.617 kb on + strand, within AO353_26745at 5856.617 kb on + strand, within AO353_26745at 5856.617 kb on + strand, within AO353_26745at 5856.618 kb on - strand, within AO353_26745at 5856.618 kb on - strand, within AO353_26745at 5856.618 kb on - strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.632 kb on + strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.633 kb on - strand, within AO353_26745at 5856.806 kb on + strand, within AO353_26745at 5856.806 kb on + strand, within AO353_26745at 5856.806 kb on + strand, within AO353_26745at 5856.806 kb on + strand, within AO353_26745at 5856.806 kb on + strand, within AO353_26745at 5856.996 kb on - strand, within AO353_26745at 5856.996 kb on - strand, within AO353_26745at 5857.065 kb on - strand, within AO353_26745at 5857.244 kb on + strand, within AO353_26745at 5857.329 kb on - strandat 5857.329 kb on - strandat 5857.340 kb on - strandat 5857.346 kb on + strandat 5857.450 kb on + strandat 5857.545 kb on - strandat 5857.545 kb on - strandat 5857.545 kb on - strandat 5857.588 kb on - strandat 5857.615 kb on + strandat 5857.615 kb on + strandat 5857.616 kb on - strandat 5857.616 kb on - strandat 5857.616 kb on - strandat 5857.616 kb on - strandat 5857.616 kb on - strandat 5857.645 kb on + strandat 5857.645 kb on + strandat 5857.645 kb on + strandat 5857.646 kb on - strandat 5857.646 kb on - strandat 5857.646 kb on - strandat 5857.850 kb on + strand, within AO353_26750at 5857.953 kb on - strand, within AO353_26750at 5858.137 kb on + strand, within AO353_26750at 5858.137 kb on + strand, within AO353_26750at 5858.170 kb on + strand, within AO353_26750at 5858.170 kb on + strand, within AO353_26750at 5858.170 kb on + strand, within AO353_26750at 5858.177 kb on + strand, within AO353_26750at 5858.177 kb on + strand, within AO353_26750at 5858.178 kb on - strand, within AO353_26750at 5858.311 kb on + strand, within AO353_26750at 5858.311 kb on + strand, within AO353_26750at 5858.311 kb on + strand, within AO353_26750at 5858.347 kb on + strand, within AO353_26750at 5858.348 kb on - strand, within AO353_26750at 5858.348 kb on - strand, within AO353_26750at 5858.362 kb on + strand, within AO353_26750at 5858.362 kb on + strand, within AO353_26750at 5858.363 kb on - strand, within AO353_26750at 5858.363 kb on - strand, within AO353_26750at 5858.389 kb on + strand, within AO353_26750at 5858.389 kb on + strand, within AO353_26750at 5858.389 kb on + strand, within AO353_26750at 5858.389 kb on + strand, within AO353_26750at 5858.390 kb on - strand, within AO353_26750at 5858.390 kb on - strand, within AO353_26750at 5858.390 kb on - strand, within AO353_26750

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,854,901 - AO353_26740 0.55 +0.4
5,854,901 - AO353_26740 0.55 -1.0
5,854,901 - AO353_26740 0.55 -0.5
5,854,901 - AO353_26740 0.55 +0.7
5,854,901 - AO353_26740 0.55 -0.0
5,854,901 - AO353_26740 0.55 +0.1
5,854,901 - AO353_26740 0.55 -0.1
5,854,902 + AO353_26740 0.55 -0.8
5,854,902 + AO353_26740 0.55 +0.2
5,854,903 - AO353_26740 0.55 +0.4
5,854,903 - AO353_26740 0.55 -0.6
5,854,976 - AO353_26740 0.60 -0.0
5,854,976 - AO353_26740 0.60 -0.3
5,854,976 - AO353_26740 0.60 +0.5
5,854,981 + AO353_26740 0.60 -1.0
5,854,981 + AO353_26740 0.60 +0.8
5,854,981 + AO353_26740 0.60 +1.2
5,854,981 + AO353_26740 0.60 +0.2
5,854,982 - AO353_26740 0.60 -1.4
5,855,072 - AO353_26740 0.65 -1.0
5,855,133 + AO353_26740 0.69 +1.0
5,855,227 + AO353_26740 0.75 +1.0
5,855,228 - AO353_26740 0.75 -1.9
5,855,228 - AO353_26740 0.75 -1.9
5,855,228 - AO353_26740 0.75 -0.0
5,855,448 - AO353_26740 0.88 +0.2
5,855,533 - +0.2
5,855,533 - +0.2
5,855,533 - +1.0
5,855,533 - +3.0
5,855,615 + +0.4
5,855,615 + +0.7
5,855,615 + +0.5
5,855,641 + -1.2
5,855,688 - +0.1
5,855,725 + -0.0
5,855,726 - -0.2
5,855,795 + -0.6
5,855,795 + +2.3
5,855,796 - +1.3
5,855,796 - -1.7
5,855,796 - -0.9
5,855,796 - -1.6
5,855,796 - -0.5
5,855,796 - -0.0
5,855,796 - -0.5
5,855,799 + +1.0
5,855,799 + +1.0
5,855,799 + -0.4
5,855,799 + +0.7
5,855,800 - +0.1
5,855,800 - +0.3
5,855,800 - -0.6
5,855,927 + +0.4
5,855,928 - +0.3
5,856,101 + AO353_26745 0.17 +0.2
5,856,101 + AO353_26745 0.17 +0.9
5,856,101 + AO353_26745 0.17 +1.4
5,856,102 - AO353_26745 0.17 +1.6
5,856,102 - AO353_26745 0.17 +0.3
5,856,102 - AO353_26745 0.17 -0.6
5,856,102 - AO353_26745 0.17 +0.7
5,856,102 - AO353_26745 0.17 +0.4
5,856,102 - AO353_26745 0.17 +0.4
5,856,102 - AO353_26745 0.17 -0.3
5,856,167 + AO353_26745 0.21 -0.2
5,856,167 + AO353_26745 0.21 -0.2
5,856,168 - AO353_26745 0.21 -0.2
5,856,168 - AO353_26745 0.21 +0.4
5,856,263 + AO353_26745 0.27 +0.2
5,856,263 + AO353_26745 0.27 +1.0
5,856,264 - AO353_26745 0.27 -0.6
5,856,264 - AO353_26745 0.27 -0.7
5,856,264 - AO353_26745 0.27 -0.0
5,856,264 - AO353_26745 0.27 +1.6
5,856,264 - AO353_26745 0.27 +1.0
5,856,264 - AO353_26745 0.27 -0.1
5,856,264 - AO353_26745 0.27 +0.2
5,856,374 + AO353_26745 0.34 +0.4
5,856,375 - AO353_26745 0.34 +0.8
5,856,375 - AO353_26745 0.34 +0.2
5,856,375 - AO353_26745 0.34 +0.1
5,856,548 - AO353_26745 0.45 -1.3
5,856,617 + AO353_26745 0.49 +0.9
5,856,617 + AO353_26745 0.49 -0.8
5,856,617 + AO353_26745 0.49 +1.2
5,856,617 + AO353_26745 0.49 -0.0
5,856,617 + AO353_26745 0.49 -0.0
5,856,618 - AO353_26745 0.49 +1.6
5,856,618 - AO353_26745 0.49 -0.5
5,856,618 - AO353_26745 0.49 -1.0
5,856,632 + AO353_26745 0.50 +0.7
5,856,632 + AO353_26745 0.50 -0.1
5,856,632 + AO353_26745 0.50 +0.4
5,856,632 + AO353_26745 0.50 -0.0
5,856,632 + AO353_26745 0.50 -0.5
5,856,632 + AO353_26745 0.50 +0.1
5,856,632 + AO353_26745 0.50 -0.0
5,856,632 + AO353_26745 0.50 +0.6
5,856,632 + AO353_26745 0.50 -1.0
5,856,632 + AO353_26745 0.50 -0.3
5,856,632 + AO353_26745 0.50 +0.7
5,856,632 + AO353_26745 0.50 -0.2
5,856,633 - AO353_26745 0.50 -0.9
5,856,633 - AO353_26745 0.50 +0.7
5,856,633 - AO353_26745 0.50 +1.5
5,856,633 - AO353_26745 0.50 -0.1
5,856,633 - AO353_26745 0.50 +0.4
5,856,633 - AO353_26745 0.50 +1.1
5,856,633 - AO353_26745 0.50 +0.6
5,856,633 - AO353_26745 0.50 -0.0
5,856,633 - AO353_26745 0.50 +1.3
5,856,806 + AO353_26745 0.61 +0.5
5,856,806 + AO353_26745 0.61 -1.0
5,856,806 + AO353_26745 0.61 +0.5
5,856,806 + AO353_26745 0.61 +1.0
5,856,806 + AO353_26745 0.61 +0.4
5,856,996 - AO353_26745 0.72 -0.8
5,856,996 - AO353_26745 0.72 -0.9
5,857,065 - AO353_26745 0.77 +2.0
5,857,244 + AO353_26745 0.88 -0.4
5,857,329 - -0.2
5,857,329 - +0.2
5,857,340 - +1.0
5,857,346 + -0.2
5,857,450 + +0.3
5,857,545 - -0.3
5,857,545 - -0.3
5,857,545 - +0.1
5,857,588 - -1.0
5,857,615 + -0.3
5,857,615 + +2.0
5,857,616 - +0.7
5,857,616 - +0.4
5,857,616 - +0.3
5,857,616 - -0.0
5,857,616 - -0.2
5,857,645 + +0.2
5,857,645 + +1.1
5,857,645 + -1.0
5,857,646 - +0.4
5,857,646 - +0.1
5,857,646 - +0.6
5,857,850 + AO353_26750 0.22 +1.4
5,857,953 - AO353_26750 0.29 +0.4
5,858,137 + AO353_26750 0.42 +1.4
5,858,137 + AO353_26750 0.42 -1.4
5,858,170 + AO353_26750 0.44 -0.6
5,858,170 + AO353_26750 0.44 -0.4
5,858,170 + AO353_26750 0.44 -0.7
5,858,177 + AO353_26750 0.45 -0.7
5,858,177 + AO353_26750 0.45 +0.6
5,858,178 - AO353_26750 0.45 +1.0
5,858,311 + AO353_26750 0.54 +0.2
5,858,311 + AO353_26750 0.54 +1.0
5,858,311 + AO353_26750 0.54 -1.0
5,858,347 + AO353_26750 0.57 -2.3
5,858,348 - AO353_26750 0.57 -0.4
5,858,348 - AO353_26750 0.57 +1.2
5,858,362 + AO353_26750 0.58 -0.3
5,858,362 + AO353_26750 0.58 +1.0
5,858,363 - AO353_26750 0.58 +0.1
5,858,363 - AO353_26750 0.58 +0.2
5,858,389 + AO353_26750 0.60 +2.6
5,858,389 + AO353_26750 0.60 -0.7
5,858,389 + AO353_26750 0.60 -0.1
5,858,389 + AO353_26750 0.60 +1.2
5,858,390 - AO353_26750 0.60 -1.3
5,858,390 - AO353_26750 0.60 +0.2
5,858,390 - AO353_26750 0.60 -0.0

Or see this region's nucleotide sequence