Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25860

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25855 and AO353_25860 are separated by 10 nucleotidesAO353_25860 and AO353_25865 are separated by 104 nucleotidesAO353_25865 and AO353_25870 are separated by 2 nucleotides AO353_25855: AO353_25855 - peptide ABC transporter substrate-binding protein, at 5,700,587 to 5,702,146 _25855 AO353_25860: AO353_25860 - peptide ABC transporter, at 5,702,157 to 5,703,098 _25860 AO353_25865: AO353_25865 - peptide ABC transporter permease, at 5,703,203 to 5,703,955 _25865 AO353_25870: AO353_25870 - peptide ABC transporter ATP-binding protein, at 5,703,958 to 5,705,607 _25870 Position (kb) 5702 5703 5704Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5701.190 kb on + strand, within AO353_25855at 5701.190 kb on + strand, within AO353_25855at 5701.190 kb on + strand, within AO353_25855at 5701.190 kb on + strand, within AO353_25855at 5701.190 kb on + strand, within AO353_25855at 5701.191 kb on - strand, within AO353_25855at 5701.191 kb on - strand, within AO353_25855at 5701.191 kb on - strand, within AO353_25855at 5701.191 kb on - strand, within AO353_25855at 5701.191 kb on - strand, within AO353_25855at 5701.191 kb on - strandat 5701.191 kb on - strand, within AO353_25855at 5701.191 kb on - strand, within AO353_25855at 5701.483 kb on + strand, within AO353_25855at 5701.483 kb on + strand, within AO353_25855at 5701.484 kb on - strand, within AO353_25855at 5701.617 kb on - strand, within AO353_25855at 5701.664 kb on + strand, within AO353_25855at 5701.823 kb on + strand, within AO353_25855at 5701.845 kb on - strand, within AO353_25855at 5702.028 kb on + strandat 5702.028 kb on + strandat 5702.029 kb on - strandat 5702.045 kb on + strandat 5702.045 kb on + strandat 5702.045 kb on + strandat 5702.045 kb on + strandat 5702.045 kb on + strandat 5702.045 kb on + strandat 5702.045 kb on + strandat 5702.045 kb on + strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.046 kb on - strandat 5702.145 kb on - strandat 5702.280 kb on - strand, within AO353_25860at 5702.694 kb on + strand, within AO353_25860at 5702.694 kb on + strand, within AO353_25860at 5702.694 kb on + strand, within AO353_25860at 5702.695 kb on - strand, within AO353_25860at 5702.695 kb on - strand, within AO353_25860at 5702.695 kb on - strand, within AO353_25860at 5702.790 kb on + strand, within AO353_25860at 5702.790 kb on + strand, within AO353_25860at 5702.790 kb on + strand, within AO353_25860at 5702.791 kb on - strand, within AO353_25860at 5702.791 kb on - strand, within AO353_25860at 5702.791 kb on - strand, within AO353_25860at 5702.791 kb on - strand, within AO353_25860at 5702.976 kb on - strand, within AO353_25860at 5702.979 kb on + strand, within AO353_25860at 5702.979 kb on + strand, within AO353_25860at 5702.980 kb on - strand, within AO353_25860at 5702.980 kb on - strand, within AO353_25860at 5702.980 kb on - strand, within AO353_25860at 5703.017 kb on - strandat 5703.033 kb on + strandat 5703.033 kb on + strandat 5703.034 kb on - strandat 5703.034 kb on - strandat 5703.034 kb on - strandat 5703.066 kb on + strandat 5703.094 kb on + strandat 5703.094 kb on + strandat 5703.095 kb on - strandat 5703.125 kb on - strandat 5703.233 kb on + strandat 5703.255 kb on + strandat 5703.255 kb on + strandat 5703.255 kb on + strandat 5703.255 kb on + strandat 5703.255 kb on + strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.256 kb on - strandat 5703.426 kb on - strand, within AO353_25865at 5703.536 kb on + strand, within AO353_25865at 5703.566 kb on + strand, within AO353_25865at 5703.566 kb on + strand, within AO353_25865at 5703.569 kb on - strand, within AO353_25865at 5703.569 kb on - strand, within AO353_25865at 5703.569 kb on - strand, within AO353_25865at 5703.665 kb on + strandat 5703.665 kb on + strand, within AO353_25865at 5703.675 kb on - strand, within AO353_25865at 5703.811 kb on + strand, within AO353_25865at 5703.811 kb on + strand, within AO353_25865at 5703.811 kb on + strand, within AO353_25865at 5703.811 kb on + strand, within AO353_25865at 5703.812 kb on - strand, within AO353_25865at 5703.812 kb on - strand, within AO353_25865at 5703.812 kb on - strand, within AO353_25865at 5703.833 kb on + strand, within AO353_25865at 5703.833 kb on + strand, within AO353_25865at 5703.834 kb on - strand, within AO353_25865at 5703.834 kb on - strand, within AO353_25865

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,701,190 + AO353_25855 0.39 -0.9
5,701,190 + AO353_25855 0.39 -2.8
5,701,190 + AO353_25855 0.39 +0.6
5,701,190 + AO353_25855 0.39 +0.1
5,701,190 + AO353_25855 0.39 -0.7
5,701,191 - AO353_25855 0.39 -0.2
5,701,191 - AO353_25855 0.39 -0.1
5,701,191 - AO353_25855 0.39 +1.7
5,701,191 - AO353_25855 0.39 -0.1
5,701,191 - AO353_25855 0.39 -0.9
5,701,191 - +1.9
5,701,191 - AO353_25855 0.39 +0.9
5,701,191 - AO353_25855 0.39 +0.1
5,701,483 + AO353_25855 0.57 -0.5
5,701,483 + AO353_25855 0.57 +0.3
5,701,484 - AO353_25855 0.57 +0.2
5,701,617 - AO353_25855 0.66 -0.4
5,701,664 + AO353_25855 0.69 -0.5
5,701,823 + AO353_25855 0.79 +0.3
5,701,845 - AO353_25855 0.81 -1.3
5,702,028 + +1.5
5,702,028 + +0.6
5,702,029 - -0.9
5,702,045 + -0.2
5,702,045 + +0.3
5,702,045 + -0.1
5,702,045 + -1.4
5,702,045 + +0.6
5,702,045 + -1.0
5,702,045 + -0.1
5,702,045 + -0.4
5,702,046 - +0.9
5,702,046 - +0.0
5,702,046 - +0.0
5,702,046 - +0.2
5,702,046 - -0.2
5,702,046 - +2.2
5,702,046 - +0.1
5,702,046 - -0.7
5,702,046 - -0.7
5,702,046 - +0.9
5,702,046 - +0.6
5,702,145 - -0.9
5,702,280 - AO353_25860 0.13 -0.6
5,702,694 + AO353_25860 0.57 +0.7
5,702,694 + AO353_25860 0.57 -0.4
5,702,694 + AO353_25860 0.57 +0.1
5,702,695 - AO353_25860 0.57 +1.7
5,702,695 - AO353_25860 0.57 -0.1
5,702,695 - AO353_25860 0.57 +0.2
5,702,790 + AO353_25860 0.67 +0.1
5,702,790 + AO353_25860 0.67 +0.1
5,702,790 + AO353_25860 0.67 -0.2
5,702,791 - AO353_25860 0.67 -0.3
5,702,791 - AO353_25860 0.67 +1.9
5,702,791 - AO353_25860 0.67 +0.6
5,702,791 - AO353_25860 0.67 +2.1
5,702,976 - AO353_25860 0.87 -0.5
5,702,979 + AO353_25860 0.87 +0.2
5,702,979 + AO353_25860 0.87 +1.9
5,702,980 - AO353_25860 0.87 -1.3
5,702,980 - AO353_25860 0.87 +0.7
5,702,980 - AO353_25860 0.87 +0.5
5,703,017 - -0.7
5,703,033 + -0.3
5,703,033 + -0.1
5,703,034 - -0.8
5,703,034 - +0.3
5,703,034 - -0.7
5,703,066 + +0.6
5,703,094 + -0.5
5,703,094 + +0.3
5,703,095 - -1.2
5,703,125 - +2.5
5,703,233 + -0.8
5,703,255 + -0.4
5,703,255 + +0.1
5,703,255 + -1.7
5,703,255 + +1.3
5,703,255 + +0.5
5,703,256 - -2.4
5,703,256 - +0.3
5,703,256 - -0.1
5,703,256 - +0.3
5,703,256 - -1.4
5,703,256 - +1.2
5,703,256 - -1.1
5,703,256 - -0.3
5,703,426 - AO353_25865 0.30 -0.4
5,703,536 + AO353_25865 0.44 +0.6
5,703,566 + AO353_25865 0.48 +0.3
5,703,566 + AO353_25865 0.48 -0.8
5,703,569 - AO353_25865 0.49 -1.9
5,703,569 - AO353_25865 0.49 +0.4
5,703,569 - AO353_25865 0.49 -0.6
5,703,665 + +1.3
5,703,665 + AO353_25865 0.61 +0.1
5,703,675 - AO353_25865 0.63 -0.6
5,703,811 + AO353_25865 0.81 -0.7
5,703,811 + AO353_25865 0.81 +1.8
5,703,811 + AO353_25865 0.81 -0.1
5,703,811 + AO353_25865 0.81 +0.6
5,703,812 - AO353_25865 0.81 +0.7
5,703,812 - AO353_25865 0.81 +0.2
5,703,812 - AO353_25865 0.81 -0.7
5,703,833 + AO353_25865 0.84 -1.4
5,703,833 + AO353_25865 0.84 -0.9
5,703,834 - AO353_25865 0.84 -0.1
5,703,834 - AO353_25865 0.84 +0.2

Or see this region's nucleotide sequence