Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25585

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25580 and AO353_25585 are separated by 294 nucleotidesAO353_25585 and AO353_25590 are separated by 83 nucleotidesAO353_25590 and AO353_25595 are separated by 10 nucleotides AO353_25580: AO353_25580 - LysR family transcriptional regulator, at 5,642,698 to 5,643,663 _25580 AO353_25585: AO353_25585 - argininosuccinate lyase, at 5,643,958 to 5,645,385 _25585 AO353_25590: AO353_25590 - ABC transporter permease, at 5,645,469 to 5,646,344 _25590 AO353_25595: AO353_25595 - ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA, at 5,646,355 to 5,647,119 _25595 Position (kb) 5643 5644 5645 5646Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5643.099 kb on - strand, within AO353_25580at 5643.110 kb on + strand, within AO353_25580at 5643.111 kb on - strand, within AO353_25580at 5643.145 kb on + strand, within AO353_25580at 5643.170 kb on - strand, within AO353_25580at 5643.342 kb on + strand, within AO353_25580at 5643.342 kb on + strand, within AO353_25580at 5643.343 kb on - strand, within AO353_25580at 5643.343 kb on - strand, within AO353_25580at 5643.423 kb on + strand, within AO353_25580at 5643.423 kb on + strand, within AO353_25580at 5643.423 kb on + strand, within AO353_25580at 5643.424 kb on - strand, within AO353_25580at 5643.445 kb on - strand, within AO353_25580at 5643.565 kb on + strand, within AO353_25580at 5643.566 kb on - strand, within AO353_25580at 5643.671 kb on - strandat 5643.671 kb on - strandat 5643.674 kb on + strandat 5643.732 kb on - strandat 5644.049 kb on - strandat 5644.918 kb on + strand, within AO353_25585at 5644.918 kb on + strand, within AO353_25585at 5644.918 kb on + strand, within AO353_25585at 5644.918 kb on + strand, within AO353_25585at 5644.918 kb on + strand, within AO353_25585at 5645.366 kb on - strandat 5645.387 kb on + strandat 5645.388 kb on - strandat 5645.423 kb on + strandat 5645.424 kb on - strandat 5645.424 kb on - strandat 5645.538 kb on + strandat 5645.538 kb on + strandat 5645.539 kb on - strandat 5645.539 kb on - strandat 5645.539 kb on - strandat 5645.548 kb on + strandat 5645.548 kb on + strandat 5645.548 kb on + strandat 5645.548 kb on + strandat 5645.549 kb on - strandat 5645.549 kb on - strandat 5645.549 kb on - strandat 5645.563 kb on - strand, within AO353_25590at 5645.649 kb on + strand, within AO353_25590at 5645.650 kb on - strand, within AO353_25590at 5645.650 kb on - strand, within AO353_25590at 5645.650 kb on - strand, within AO353_25590at 5645.794 kb on - strand, within AO353_25590at 5645.808 kb on + strand, within AO353_25590at 5645.808 kb on + strand, within AO353_25590at 5645.808 kb on + strand, within AO353_25590at 5645.808 kb on + strand, within AO353_25590at 5645.808 kb on + strand, within AO353_25590at 5645.809 kb on - strand, within AO353_25590at 5645.809 kb on - strand, within AO353_25590at 5645.809 kb on - strand, within AO353_25590at 5645.809 kb on - strand, within AO353_25590at 5645.809 kb on - strand, within AO353_25590at 5645.876 kb on - strand, within AO353_25590at 5645.876 kb on - strand, within AO353_25590at 5645.979 kb on + strand, within AO353_25590at 5645.979 kb on + strand, within AO353_25590at 5645.980 kb on - strand, within AO353_25590at 5645.980 kb on - strand, within AO353_25590at 5646.192 kb on + strand, within AO353_25590at 5646.192 kb on + strand, within AO353_25590at 5646.193 kb on - strand, within AO353_25590at 5646.210 kb on + strand, within AO353_25590at 5646.210 kb on + strand, within AO353_25590at 5646.210 kb on + strand, within AO353_25590at 5646.210 kb on + strand, within AO353_25590at 5646.210 kb on + strand, within AO353_25590at 5646.211 kb on - strand, within AO353_25590at 5646.211 kb on - strand, within AO353_25590at 5646.211 kb on - strand, within AO353_25590at 5646.211 kb on - strand, within AO353_25590at 5646.211 kb on - strand, within AO353_25590at 5646.214 kb on - strand, within AO353_25590at 5646.214 kb on - strand, within AO353_25590at 5646.238 kb on + strand, within AO353_25590at 5646.239 kb on - strand, within AO353_25590at 5646.261 kb on + strandat 5646.261 kb on + strandat 5646.262 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,643,099 - AO353_25580 0.42 -0.3
5,643,110 + AO353_25580 0.43 +0.9
5,643,111 - AO353_25580 0.43 +1.1
5,643,145 + AO353_25580 0.46 +0.3
5,643,170 - AO353_25580 0.49 -0.1
5,643,342 + AO353_25580 0.67 +0.2
5,643,342 + AO353_25580 0.67 -1.1
5,643,343 - AO353_25580 0.67 +0.7
5,643,343 - AO353_25580 0.67 +0.7
5,643,423 + AO353_25580 0.75 +0.1
5,643,423 + AO353_25580 0.75 +0.1
5,643,423 + AO353_25580 0.75 -0.6
5,643,424 - AO353_25580 0.75 -0.7
5,643,445 - AO353_25580 0.77 +1.2
5,643,565 + AO353_25580 0.90 -0.1
5,643,566 - AO353_25580 0.90 -0.7
5,643,671 - +1.1
5,643,671 - -1.7
5,643,674 + -0.1
5,643,732 - -0.5
5,644,049 - -0.6
5,644,918 + AO353_25585 0.67 +0.3
5,644,918 + AO353_25585 0.67 -0.1
5,644,918 + AO353_25585 0.67 +0.4
5,644,918 + AO353_25585 0.67 +1.3
5,644,918 + AO353_25585 0.67 -1.1
5,645,366 - -0.9
5,645,387 + -0.7
5,645,388 - -0.2
5,645,423 + -0.0
5,645,424 - -2.4
5,645,424 - +2.4
5,645,538 + -0.4
5,645,538 + -0.4
5,645,539 - -0.4
5,645,539 - +0.4
5,645,539 - -0.1
5,645,548 + -1.4
5,645,548 + -0.7
5,645,548 + +0.9
5,645,548 + +0.3
5,645,549 - +1.2
5,645,549 - -1.5
5,645,549 - -0.8
5,645,563 - AO353_25590 0.11 +1.2
5,645,649 + AO353_25590 0.21 +0.2
5,645,650 - AO353_25590 0.21 +0.1
5,645,650 - AO353_25590 0.21 +0.2
5,645,650 - AO353_25590 0.21 -1.4
5,645,794 - AO353_25590 0.37 +0.9
5,645,808 + AO353_25590 0.39 +0.5
5,645,808 + AO353_25590 0.39 -1.5
5,645,808 + AO353_25590 0.39 +0.9
5,645,808 + AO353_25590 0.39 +0.9
5,645,808 + AO353_25590 0.39 +0.2
5,645,809 - AO353_25590 0.39 -1.3
5,645,809 - AO353_25590 0.39 -0.1
5,645,809 - AO353_25590 0.39 -1.5
5,645,809 - AO353_25590 0.39 -0.1
5,645,809 - AO353_25590 0.39 +0.5
5,645,876 - AO353_25590 0.46 -1.7
5,645,876 - AO353_25590 0.46 +0.2
5,645,979 + AO353_25590 0.58 +0.1
5,645,979 + AO353_25590 0.58 -0.2
5,645,980 - AO353_25590 0.58 +0.1
5,645,980 - AO353_25590 0.58 -1.1
5,646,192 + AO353_25590 0.83 -1.4
5,646,192 + AO353_25590 0.83 +0.1
5,646,193 - AO353_25590 0.83 +0.3
5,646,210 + AO353_25590 0.85 -0.5
5,646,210 + AO353_25590 0.85 -0.5
5,646,210 + AO353_25590 0.85 -1.7
5,646,210 + AO353_25590 0.85 +0.2
5,646,210 + AO353_25590 0.85 +0.9
5,646,211 - AO353_25590 0.85 -0.2
5,646,211 - AO353_25590 0.85 +1.5
5,646,211 - AO353_25590 0.85 +0.1
5,646,211 - AO353_25590 0.85 -1.2
5,646,211 - AO353_25590 0.85 -0.8
5,646,214 - AO353_25590 0.85 -0.5
5,646,214 - AO353_25590 0.85 -0.1
5,646,238 + AO353_25590 0.88 -0.6
5,646,239 - AO353_25590 0.88 -0.3
5,646,261 + -0.2
5,646,261 + -0.8
5,646,262 - -3.3

Or see this region's nucleotide sequence