Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25375

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25370 and AO353_25375 are separated by 437 nucleotidesAO353_25375 and AO353_25380 are separated by 44 nucleotidesAO353_25380 and AO353_25385 are separated by 46 nucleotides AO353_25370: AO353_25370 - CbbBc protein, at 5,594,533 to 5,596,857 _25370 AO353_25375: AO353_25375 - cyclic pyranopterin phosphate synthase MoaA, at 5,597,295 to 5,598,293 _25375 AO353_25380: AO353_25380 - bestrophin, at 5,598,338 to 5,599,237 _25380 AO353_25385: AO353_25385 - molybdenum cofactor biosynthesis protein MoaC, at 5,599,284 to 5,599,790 _25385 Position (kb) 5597 5598 5599Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5596.357 kb on + strand, within AO353_25370at 5596.358 kb on - strand, within AO353_25370at 5596.365 kb on - strand, within AO353_25370at 5596.370 kb on + strand, within AO353_25370at 5596.370 kb on + strand, within AO353_25370at 5596.370 kb on + strand, within AO353_25370at 5596.370 kb on + strand, within AO353_25370at 5596.403 kb on + strand, within AO353_25370at 5596.404 kb on - strand, within AO353_25370at 5596.404 kb on - strand, within AO353_25370at 5596.488 kb on - strand, within AO353_25370at 5596.488 kb on - strand, within AO353_25370at 5596.509 kb on - strand, within AO353_25370at 5596.538 kb on + strand, within AO353_25370at 5596.551 kb on - strand, within AO353_25370at 5596.583 kb on + strand, within AO353_25370at 5596.583 kb on + strand, within AO353_25370at 5596.584 kb on - strand, within AO353_25370at 5596.584 kb on - strand, within AO353_25370at 5596.584 kb on - strand, within AO353_25370at 5596.584 kb on - strand, within AO353_25370at 5596.584 kb on - strand, within AO353_25370at 5596.829 kb on + strandat 5596.829 kb on + strandat 5596.829 kb on + strandat 5596.830 kb on - strandat 5596.830 kb on - strandat 5596.837 kb on - strandat 5596.837 kb on - strandat 5596.860 kb on + strandat 5596.860 kb on + strandat 5596.860 kb on + strandat 5597.025 kb on + strandat 5597.197 kb on - strandat 5597.228 kb on + strandat 5597.228 kb on + strandat 5597.229 kb on - strandat 5597.340 kb on + strandat 5597.341 kb on - strandat 5597.448 kb on + strand, within AO353_25375at 5597.448 kb on + strand, within AO353_25375at 5597.449 kb on - strand, within AO353_25375at 5597.449 kb on - strand, within AO353_25375at 5597.449 kb on - strand, within AO353_25375at 5597.455 kb on + strand, within AO353_25375at 5597.455 kb on + strand, within AO353_25375at 5597.456 kb on - strand, within AO353_25375at 5597.533 kb on + strand, within AO353_25375at 5597.533 kb on + strand, within AO353_25375at 5597.533 kb on + strand, within AO353_25375at 5597.533 kb on + strand, within AO353_25375at 5597.533 kb on + strand, within AO353_25375at 5597.534 kb on - strand, within AO353_25375at 5597.534 kb on - strand, within AO353_25375at 5597.655 kb on - strand, within AO353_25375at 5597.765 kb on + strand, within AO353_25375at 5597.765 kb on + strand, within AO353_25375at 5597.765 kb on + strand, within AO353_25375at 5597.766 kb on - strand, within AO353_25375at 5597.766 kb on - strand, within AO353_25375at 5597.766 kb on - strand, within AO353_25375at 5597.766 kb on - strand, within AO353_25375at 5597.812 kb on + strand, within AO353_25375at 5597.812 kb on + strand, within AO353_25375at 5597.812 kb on + strand, within AO353_25375at 5597.812 kb on + strand, within AO353_25375at 5597.813 kb on - strand, within AO353_25375at 5597.813 kb on - strand, within AO353_25375at 5597.824 kb on + strand, within AO353_25375at 5597.825 kb on - strand, within AO353_25375at 5597.852 kb on + strand, within AO353_25375at 5597.852 kb on + strand, within AO353_25375at 5597.942 kb on + strand, within AO353_25375at 5598.154 kb on + strand, within AO353_25375at 5598.154 kb on + strand, within AO353_25375at 5598.155 kb on - strand, within AO353_25375at 5598.225 kb on + strandat 5598.315 kb on + strandat 5598.315 kb on + strandat 5598.315 kb on + strandat 5598.315 kb on + strandat 5598.316 kb on - strandat 5598.316 kb on - strandat 5598.316 kb on - strandat 5598.316 kb on - strandat 5598.322 kb on + strandat 5598.322 kb on + strandat 5598.322 kb on + strandat 5598.347 kb on - strandat 5598.359 kb on - strandat 5598.448 kb on + strand, within AO353_25380at 5598.448 kb on + strand, within AO353_25380at 5598.448 kb on + strand, within AO353_25380at 5598.449 kb on - strand, within AO353_25380at 5598.563 kb on + strand, within AO353_25380at 5598.564 kb on - strand, within AO353_25380at 5598.575 kb on + strand, within AO353_25380at 5598.576 kb on - strand, within AO353_25380at 5598.615 kb on + strand, within AO353_25380at 5598.615 kb on + strand, within AO353_25380at 5598.616 kb on - strand, within AO353_25380at 5598.672 kb on + strand, within AO353_25380at 5598.672 kb on + strand, within AO353_25380at 5598.673 kb on - strand, within AO353_25380at 5598.673 kb on - strand, within AO353_25380at 5598.749 kb on - strand, within AO353_25380at 5598.749 kb on - strand, within AO353_25380at 5598.980 kb on + strand, within AO353_25380at 5598.981 kb on - strand, within AO353_25380at 5598.981 kb on - strand, within AO353_25380at 5598.984 kb on + strand, within AO353_25380at 5598.985 kb on - strand, within AO353_25380at 5598.985 kb on - strand, within AO353_25380at 5599.062 kb on - strand, within AO353_25380at 5599.062 kb on - strand, within AO353_25380at 5599.062 kb on - strand, within AO353_25380at 5599.063 kb on + strand, within AO353_25380at 5599.063 kb on + strand, within AO353_25380at 5599.063 kb on + strand, within AO353_25380at 5599.063 kb on + strand, within AO353_25380at 5599.063 kb on + strand, within AO353_25380at 5599.063 kb on + strand, within AO353_25380at 5599.064 kb on - strand, within AO353_25380at 5599.064 kb on - strand, within AO353_25380at 5599.064 kb on - strand, within AO353_25380at 5599.064 kb on - strand, within AO353_25380at 5599.280 kb on - strandat 5599.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,596,357 + AO353_25370 0.78 +1.3
5,596,358 - AO353_25370 0.78 -0.8
5,596,365 - AO353_25370 0.79 -2.4
5,596,370 + AO353_25370 0.79 +0.9
5,596,370 + AO353_25370 0.79 +0.5
5,596,370 + AO353_25370 0.79 +0.7
5,596,370 + AO353_25370 0.79 +0.7
5,596,403 + AO353_25370 0.80 +0.2
5,596,404 - AO353_25370 0.80 +1.9
5,596,404 - AO353_25370 0.80 -1.4
5,596,488 - AO353_25370 0.84 -0.1
5,596,488 - AO353_25370 0.84 +2.5
5,596,509 - AO353_25370 0.85 +0.1
5,596,538 + AO353_25370 0.86 -0.5
5,596,551 - AO353_25370 0.87 -0.8
5,596,583 + AO353_25370 0.88 -0.8
5,596,583 + AO353_25370 0.88 -0.4
5,596,584 - AO353_25370 0.88 +1.3
5,596,584 - AO353_25370 0.88 +0.0
5,596,584 - AO353_25370 0.88 -2.0
5,596,584 - AO353_25370 0.88 -0.2
5,596,584 - AO353_25370 0.88 -2.3
5,596,829 + -1.9
5,596,829 + +0.7
5,596,829 + -0.1
5,596,830 - +0.9
5,596,830 - +0.2
5,596,837 - +0.5
5,596,837 - -1.7
5,596,860 + -0.4
5,596,860 + +0.3
5,596,860 + -1.9
5,597,025 + -1.4
5,597,197 - -0.5
5,597,228 + +0.9
5,597,228 + -1.3
5,597,229 - -0.2
5,597,340 + -0.3
5,597,341 - -0.6
5,597,448 + AO353_25375 0.15 -1.1
5,597,448 + AO353_25375 0.15 +0.3
5,597,449 - AO353_25375 0.15 +0.5
5,597,449 - AO353_25375 0.15 +0.6
5,597,449 - AO353_25375 0.15 +0.2
5,597,455 + AO353_25375 0.16 -0.7
5,597,455 + AO353_25375 0.16 -0.7
5,597,456 - AO353_25375 0.16 +1.1
5,597,533 + AO353_25375 0.24 +1.2
5,597,533 + AO353_25375 0.24 -0.1
5,597,533 + AO353_25375 0.24 +1.5
5,597,533 + AO353_25375 0.24 -0.4
5,597,533 + AO353_25375 0.24 +0.3
5,597,534 - AO353_25375 0.24 +0.3
5,597,534 - AO353_25375 0.24 +0.3
5,597,655 - AO353_25375 0.36 +0.5
5,597,765 + AO353_25375 0.47 +0.1
5,597,765 + AO353_25375 0.47 -0.7
5,597,765 + AO353_25375 0.47 +1.7
5,597,766 - AO353_25375 0.47 +2.1
5,597,766 - AO353_25375 0.47 +0.0
5,597,766 - AO353_25375 0.47 -0.2
5,597,766 - AO353_25375 0.47 +0.5
5,597,812 + AO353_25375 0.52 +1.5
5,597,812 + AO353_25375 0.52 +0.2
5,597,812 + AO353_25375 0.52 +0.3
5,597,812 + AO353_25375 0.52 -0.3
5,597,813 - AO353_25375 0.52 -0.2
5,597,813 - AO353_25375 0.52 +0.9
5,597,824 + AO353_25375 0.53 +0.3
5,597,825 - AO353_25375 0.53 +0.2
5,597,852 + AO353_25375 0.56 -0.1
5,597,852 + AO353_25375 0.56 +0.9
5,597,942 + AO353_25375 0.65 +0.9
5,598,154 + AO353_25375 0.86 +0.3
5,598,154 + AO353_25375 0.86 -0.1
5,598,155 - AO353_25375 0.86 +0.3
5,598,225 + +0.8
5,598,315 + -1.2
5,598,315 + -0.4
5,598,315 + -0.7
5,598,315 + +0.9
5,598,316 - +0.5
5,598,316 - +0.9
5,598,316 - -0.8
5,598,316 - -0.6
5,598,322 + +0.2
5,598,322 + -0.1
5,598,322 + +0.1
5,598,347 - +1.3
5,598,359 - -0.2
5,598,448 + AO353_25380 0.12 -0.2
5,598,448 + AO353_25380 0.12 +0.9
5,598,448 + AO353_25380 0.12 +0.6
5,598,449 - AO353_25380 0.12 -0.1
5,598,563 + AO353_25380 0.25 +0.5
5,598,564 - AO353_25380 0.25 -0.8
5,598,575 + AO353_25380 0.26 +0.7
5,598,576 - AO353_25380 0.26 +0.2
5,598,615 + AO353_25380 0.31 +0.4
5,598,615 + AO353_25380 0.31 -0.2
5,598,616 - AO353_25380 0.31 -2.9
5,598,672 + AO353_25380 0.37 +0.3
5,598,672 + AO353_25380 0.37 +1.3
5,598,673 - AO353_25380 0.37 +1.4
5,598,673 - AO353_25380 0.37 +0.6
5,598,749 - AO353_25380 0.46 -0.9
5,598,749 - AO353_25380 0.46 -0.9
5,598,980 + AO353_25380 0.71 +0.3
5,598,981 - AO353_25380 0.71 -0.3
5,598,981 - AO353_25380 0.71 +0.2
5,598,984 + AO353_25380 0.72 +0.7
5,598,985 - AO353_25380 0.72 -0.4
5,598,985 - AO353_25380 0.72 +0.4
5,599,062 - AO353_25380 0.80 -1.1
5,599,062 - AO353_25380 0.80 -1.1
5,599,062 - AO353_25380 0.80 -1.1
5,599,063 + AO353_25380 0.81 -0.4
5,599,063 + AO353_25380 0.81 -0.5
5,599,063 + AO353_25380 0.81 +0.1
5,599,063 + AO353_25380 0.81 +0.8
5,599,063 + AO353_25380 0.81 -2.0
5,599,063 + AO353_25380 0.81 -0.5
5,599,064 - AO353_25380 0.81 -0.9
5,599,064 - AO353_25380 0.81 +0.1
5,599,064 - AO353_25380 0.81 -1.4
5,599,064 - AO353_25380 0.81 +0.5
5,599,280 - -1.3
5,599,280 - -1.7

Or see this region's nucleotide sequence