Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25050

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25045 and AO353_25050 are separated by 416 nucleotides AO353_25045: AO353_25045 - AraC family transcriptional regulator, at 5,522,610 to 5,523,713 _25045 AO353_25050: AO353_25050 - AraC family transcriptional regulator, at 5,524,130 to 5,525,233 _25050 Position (kb) 5524 5525 5526Strain fitness (log2 ratio) -2 -1 0 1 2at 5523.148 kb on + strand, within AO353_25045at 5523.210 kb on + strand, within AO353_25045at 5523.211 kb on - strand, within AO353_25045at 5523.211 kb on - strand, within AO353_25045at 5523.211 kb on - strand, within AO353_25045at 5523.260 kb on + strand, within AO353_25045at 5523.260 kb on + strand, within AO353_25045at 5523.260 kb on + strand, within AO353_25045at 5523.260 kb on + strand, within AO353_25045at 5523.260 kb on + strand, within AO353_25045at 5523.260 kb on + strand, within AO353_25045at 5523.261 kb on - strand, within AO353_25045at 5523.261 kb on - strand, within AO353_25045at 5523.261 kb on - strand, within AO353_25045at 5523.261 kb on - strand, within AO353_25045at 5523.261 kb on - strand, within AO353_25045at 5523.261 kb on - strand, within AO353_25045at 5523.295 kb on + strand, within AO353_25045at 5523.296 kb on - strand, within AO353_25045at 5523.319 kb on + strand, within AO353_25045at 5523.320 kb on - strand, within AO353_25045at 5523.354 kb on + strand, within AO353_25045at 5523.354 kb on + strand, within AO353_25045at 5523.354 kb on + strand, within AO353_25045at 5523.354 kb on + strand, within AO353_25045at 5523.354 kb on + strand, within AO353_25045at 5523.354 kb on + strand, within AO353_25045at 5523.355 kb on - strand, within AO353_25045at 5523.399 kb on + strand, within AO353_25045at 5523.400 kb on - strand, within AO353_25045at 5523.423 kb on + strand, within AO353_25045at 5523.423 kb on + strand, within AO353_25045at 5523.426 kb on + strand, within AO353_25045at 5523.426 kb on + strand, within AO353_25045at 5523.426 kb on + strand, within AO353_25045at 5523.426 kb on + strand, within AO353_25045at 5523.549 kb on + strand, within AO353_25045at 5523.549 kb on + strandat 5523.549 kb on + strand, within AO353_25045at 5523.549 kb on + strand, within AO353_25045at 5523.552 kb on + strand, within AO353_25045at 5523.580 kb on + strand, within AO353_25045at 5523.580 kb on + strand, within AO353_25045at 5523.581 kb on - strand, within AO353_25045at 5523.581 kb on - strand, within AO353_25045at 5523.581 kb on - strand, within AO353_25045at 5523.711 kb on + strandat 5523.711 kb on + strandat 5523.711 kb on + strandat 5523.711 kb on + strandat 5523.711 kb on + strandat 5523.711 kb on + strandat 5523.711 kb on + strandat 5523.808 kb on + strandat 5523.872 kb on + strandat 5523.879 kb on + strandat 5523.880 kb on - strandat 5523.882 kb on + strandat 5523.882 kb on + strandat 5523.883 kb on - strandat 5523.883 kb on - strandat 5523.885 kb on + strandat 5523.885 kb on + strandat 5523.892 kb on + strandat 5523.892 kb on + strandat 5523.892 kb on + strandat 5523.892 kb on + strandat 5523.893 kb on - strandat 5523.893 kb on - strandat 5523.919 kb on + strandat 5523.939 kb on + strandat 5523.943 kb on + strandat 5523.943 kb on + strandat 5523.963 kb on + strandat 5523.963 kb on + strandat 5523.964 kb on - strandat 5523.964 kb on - strandat 5524.073 kb on + strandat 5524.074 kb on - strandat 5524.074 kb on - strandat 5524.077 kb on - strandat 5524.123 kb on + strandat 5524.123 kb on + strandat 5524.123 kb on + strandat 5524.124 kb on - strandat 5524.124 kb on - strandat 5524.124 kb on - strandat 5524.730 kb on + strand, within AO353_25050at 5524.730 kb on + strand, within AO353_25050at 5524.731 kb on - strand, within AO353_25050at 5524.943 kb on + strandat 5524.944 kb on - strand, within AO353_25050at 5524.946 kb on + strand, within AO353_25050at 5524.947 kb on - strand, within AO353_25050at 5525.020 kb on + strand, within AO353_25050at 5525.020 kb on + strand, within AO353_25050at 5525.021 kb on - strand, within AO353_25050at 5525.069 kb on + strand, within AO353_25050at 5525.070 kb on - strand, within AO353_25050at 5525.070 kb on - strand, within AO353_25050at 5525.072 kb on + strand, within AO353_25050at 5525.072 kb on + strand, within AO353_25050at 5525.072 kb on + strand, within AO353_25050at 5525.072 kb on + strand, within AO353_25050at 5525.072 kb on + strand, within AO353_25050at 5525.073 kb on - strand, within AO353_25050at 5525.073 kb on - strand, within AO353_25050at 5525.073 kb on - strand, within AO353_25050at 5525.171 kb on - strandat 5525.237 kb on + strandat 5525.237 kb on + strandat 5525.237 kb on + strandat 5525.237 kb on + strandat 5525.237 kb on + strandat 5525.237 kb on + strandat 5525.237 kb on + strandat 5525.237 kb on + strandat 5525.237 kb on + strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.238 kb on - strandat 5525.239 kb on + strandat 5525.266 kb on + strandat 5525.266 kb on + strandat 5525.267 kb on - strandat 5525.307 kb on + strandat 5525.307 kb on + strandat 5525.307 kb on + strandat 5525.307 kb on + strandat 5525.307 kb on + strandat 5525.308 kb on - strandat 5525.311 kb on + strandat 5525.311 kb on + strandat 5525.311 kb on + strandat 5525.311 kb on + strandat 5525.312 kb on - strandat 5525.312 kb on - strandat 5525.312 kb on - strandat 5525.385 kb on + strandat 5525.386 kb on - strandat 5525.395 kb on + strandat 5525.395 kb on + strandat 5525.396 kb on - strandat 5525.407 kb on + strandat 5525.433 kb on + strandat 5525.433 kb on + strandat 5525.434 kb on - strandat 5525.434 kb on - strandat 5525.434 kb on - strandat 5525.434 kb on - strandat 5525.434 kb on - strandat 5525.480 kb on - strandat 5525.481 kb on + strandat 5525.481 kb on + strandat 5525.482 kb on - strandat 5525.482 kb on - strandat 5525.507 kb on + strandat 5525.507 kb on + strandat 5525.507 kb on + strandat 5525.507 kb on + strandat 5525.507 kb on + strandat 5525.508 kb on - strandat 5525.511 kb on + strandat 5525.512 kb on - strandat 5525.512 kb on - strandat 5525.512 kb on - strandat 5525.512 kb on - strandat 5525.521 kb on + strandat 5525.521 kb on + strandat 5525.521 kb on + strandat 5525.521 kb on + strandat 5525.521 kb on + strandat 5525.562 kb on + strandat 5525.563 kb on - strandat 5525.563 kb on - strandat 5525.669 kb on - strandat 5525.759 kb on + strandat 5525.760 kb on - strandat 5525.760 kb on - strandat 5525.773 kb on + strandat 5525.820 kb on + strandat 5525.821 kb on - strandat 5525.834 kb on - strandat 5525.834 kb on - strandat 5525.861 kb on - strandat 5525.908 kb on + strandat 5525.908 kb on + strandat 5525.908 kb on + strandat 5525.909 kb on - strandat 5525.909 kb on - strandat 5525.976 kb on + strandat 5525.976 kb on + strandat 5525.976 kb on + strandat 5525.977 kb on - strandat 5525.977 kb on - strandat 5526.102 kb on + strandat 5526.102 kb on + strandat 5526.102 kb on + strandat 5526.102 kb on + strandat 5526.103 kb on - strandat 5526.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,523,148 + AO353_25045 0.49 +0.2
5,523,210 + AO353_25045 0.54 +0.3
5,523,211 - AO353_25045 0.54 -1.3
5,523,211 - AO353_25045 0.54 +0.3
5,523,211 - AO353_25045 0.54 -0.9
5,523,260 + AO353_25045 0.59 +0.4
5,523,260 + AO353_25045 0.59 +0.6
5,523,260 + AO353_25045 0.59 -0.5
5,523,260 + AO353_25045 0.59 +0.9
5,523,260 + AO353_25045 0.59 -0.5
5,523,260 + AO353_25045 0.59 -1.6
5,523,261 - AO353_25045 0.59 -0.6
5,523,261 - AO353_25045 0.59 -2.4
5,523,261 - AO353_25045 0.59 -0.3
5,523,261 - AO353_25045 0.59 +0.3
5,523,261 - AO353_25045 0.59 -1.6
5,523,261 - AO353_25045 0.59 -0.4
5,523,295 + AO353_25045 0.62 +0.1
5,523,296 - AO353_25045 0.62 +0.4
5,523,319 + AO353_25045 0.64 +0.9
5,523,320 - AO353_25045 0.64 -0.1
5,523,354 + AO353_25045 0.67 +0.4
5,523,354 + AO353_25045 0.67 -0.5
5,523,354 + AO353_25045 0.67 -0.9
5,523,354 + AO353_25045 0.67 +0.2
5,523,354 + AO353_25045 0.67 +0.5
5,523,354 + AO353_25045 0.67 -0.9
5,523,355 - AO353_25045 0.67 -0.6
5,523,399 + AO353_25045 0.71 -2.1
5,523,400 - AO353_25045 0.72 +0.1
5,523,423 + AO353_25045 0.74 +0.5
5,523,423 + AO353_25045 0.74 -0.1
5,523,426 + AO353_25045 0.74 +1.3
5,523,426 + AO353_25045 0.74 +0.6
5,523,426 + AO353_25045 0.74 -0.7
5,523,426 + AO353_25045 0.74 +0.0
5,523,549 + AO353_25045 0.85 +0.6
5,523,549 + -0.1
5,523,549 + AO353_25045 0.85 +0.6
5,523,549 + AO353_25045 0.85 -0.9
5,523,552 + AO353_25045 0.85 -0.1
5,523,580 + AO353_25045 0.88 +0.8
5,523,580 + AO353_25045 0.88 -0.6
5,523,581 - AO353_25045 0.88 +1.7
5,523,581 - AO353_25045 0.88 +0.5
5,523,581 - AO353_25045 0.88 +0.7
5,523,711 + +1.5
5,523,711 + +0.3
5,523,711 + +0.3
5,523,711 + +0.1
5,523,711 + -0.5
5,523,711 + -0.3
5,523,711 + +0.2
5,523,808 + -0.1
5,523,872 + -0.6
5,523,879 + -0.8
5,523,880 - -1.4
5,523,882 + +0.4
5,523,882 + -2.3
5,523,883 - -0.1
5,523,883 - -0.8
5,523,885 + -0.1
5,523,885 + -0.8
5,523,892 + -1.3
5,523,892 + +0.7
5,523,892 + -2.1
5,523,892 + +0.8
5,523,893 - -0.8
5,523,893 - +0.9
5,523,919 + -0.8
5,523,939 + -0.1
5,523,943 + -1.0
5,523,943 + +0.0
5,523,963 + +0.1
5,523,963 + -0.4
5,523,964 - +2.1
5,523,964 - +1.3
5,524,073 + -0.4
5,524,074 - +0.9
5,524,074 - -0.8
5,524,077 - -0.5
5,524,123 + -0.2
5,524,123 + -0.1
5,524,123 + -1.3
5,524,124 - +0.1
5,524,124 - +1.3
5,524,124 - -0.8
5,524,730 + AO353_25050 0.54 +0.8
5,524,730 + AO353_25050 0.54 +2.5
5,524,731 - AO353_25050 0.54 +0.7
5,524,943 + +1.2
5,524,944 - AO353_25050 0.74 -0.6
5,524,946 + AO353_25050 0.74 +1.6
5,524,947 - AO353_25050 0.74 -2.6
5,525,020 + AO353_25050 0.81 -0.1
5,525,020 + AO353_25050 0.81 +0.3
5,525,021 - AO353_25050 0.81 +0.9
5,525,069 + AO353_25050 0.85 -0.9
5,525,070 - AO353_25050 0.85 +0.7
5,525,070 - AO353_25050 0.85 -0.1
5,525,072 + AO353_25050 0.85 +1.3
5,525,072 + AO353_25050 0.85 -0.4
5,525,072 + AO353_25050 0.85 +0.6
5,525,072 + AO353_25050 0.85 -0.1
5,525,072 + AO353_25050 0.85 +0.6
5,525,073 - AO353_25050 0.85 -1.4
5,525,073 - AO353_25050 0.85 -0.1
5,525,073 - AO353_25050 0.85 +0.7
5,525,171 - -1.9
5,525,237 + -0.5
5,525,237 + -0.9
5,525,237 + -0.1
5,525,237 + +0.3
5,525,237 + -0.4
5,525,237 + +1.9
5,525,237 + -0.3
5,525,237 + +0.9
5,525,237 + +0.2
5,525,238 - -1.1
5,525,238 - +0.3
5,525,238 - -0.7
5,525,238 - +0.4
5,525,238 - +0.5
5,525,238 - -0.6
5,525,238 - -1.7
5,525,238 - -0.1
5,525,238 - +0.1
5,525,238 - -0.4
5,525,239 + -0.6
5,525,266 + -0.8
5,525,266 + +0.7
5,525,267 - +0.4
5,525,307 + +0.6
5,525,307 + -0.4
5,525,307 + -2.2
5,525,307 + -0.4
5,525,307 + +1.1
5,525,308 - +2.5
5,525,311 + +0.3
5,525,311 + -0.3
5,525,311 + -0.8
5,525,311 + -0.7
5,525,312 - +0.9
5,525,312 - +0.3
5,525,312 - -0.1
5,525,385 + +0.9
5,525,386 - +0.4
5,525,395 + -0.2
5,525,395 + +0.1
5,525,396 - +0.6
5,525,407 + -0.8
5,525,433 + +1.3
5,525,433 + +0.9
5,525,434 - -1.3
5,525,434 - -0.3
5,525,434 - +0.5
5,525,434 - -0.9
5,525,434 - +0.2
5,525,480 - -0.3
5,525,481 + -0.5
5,525,481 + -1.3
5,525,482 - -0.2
5,525,482 - +1.1
5,525,507 + -1.0
5,525,507 + -0.2
5,525,507 + -0.1
5,525,507 + -0.1
5,525,507 + -1.6
5,525,508 - -0.0
5,525,511 + +0.2
5,525,512 - -0.8
5,525,512 - +0.9
5,525,512 - -0.1
5,525,512 - -0.3
5,525,521 + -0.8
5,525,521 + +0.9
5,525,521 + -0.7
5,525,521 + +0.3
5,525,521 + -1.4
5,525,562 + -0.4
5,525,563 - -0.1
5,525,563 - +0.2
5,525,669 - +0.6
5,525,759 + +0.7
5,525,760 - +0.3
5,525,760 - +0.2
5,525,773 + -0.5
5,525,820 + -0.2
5,525,821 - +0.9
5,525,834 - -1.3
5,525,834 - -1.1
5,525,861 - -1.6
5,525,908 + -0.4
5,525,908 + -0.9
5,525,908 + +0.7
5,525,909 - +1.3
5,525,909 - -0.1
5,525,976 + +0.4
5,525,976 + -0.0
5,525,976 + +0.0
5,525,977 - -1.0
5,525,977 - +0.2
5,526,102 + +0.1
5,526,102 + -0.1
5,526,102 + -1.3
5,526,102 + +0.1
5,526,103 - +0.7
5,526,103 - -0.1

Or see this region's nucleotide sequence