Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24535

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24525 and AO353_24530 are separated by 117 nucleotidesAO353_24530 and AO353_24535 are separated by 9 nucleotidesAO353_24535 and AO353_24540 are separated by 84 nucleotidesAO353_24540 and AO353_24545 are separated by 101 nucleotides AO353_24525: AO353_24525 - LysR family transcriptional regulator, at 5,392,114 to 5,393,028 _24525 AO353_24530: AO353_24530 - hypothetical protein, at 5,393,146 to 5,393,454 _24530 AO353_24535: AO353_24535 - hypothetical protein, at 5,393,464 to 5,393,673 _24535 AO353_24540: AO353_24540 - hypothetical protein, at 5,393,758 to 5,394,075 _24540 AO353_24545: AO353_24545 - hypothetical protein, at 5,394,177 to 5,394,536 _24545 Position (kb) 5393 5394Strain fitness (log2 ratio) -2 -1 0 1 2at 5392.522 kb on + strand, within AO353_24525at 5392.522 kb on + strand, within AO353_24525at 5392.522 kb on + strand, within AO353_24525at 5392.523 kb on - strand, within AO353_24525at 5392.523 kb on - strand, within AO353_24525at 5392.523 kb on - strand, within AO353_24525at 5392.590 kb on + strand, within AO353_24525at 5392.590 kb on + strand, within AO353_24525at 5392.591 kb on - strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.594 kb on + strand, within AO353_24525at 5392.595 kb on - strand, within AO353_24525at 5392.595 kb on - strand, within AO353_24525at 5392.695 kb on + strand, within AO353_24525at 5392.695 kb on + strand, within AO353_24525at 5392.696 kb on - strand, within AO353_24525at 5392.696 kb on - strand, within AO353_24525at 5392.696 kb on - strand, within AO353_24525at 5392.724 kb on + strand, within AO353_24525at 5392.725 kb on - strand, within AO353_24525at 5392.725 kb on - strand, within AO353_24525at 5392.725 kb on - strand, within AO353_24525at 5392.725 kb on - strand, within AO353_24525at 5392.778 kb on - strand, within AO353_24525at 5392.778 kb on - strand, within AO353_24525at 5392.784 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.801 kb on + strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.802 kb on - strand, within AO353_24525at 5392.804 kb on - strand, within AO353_24525at 5392.804 kb on - strand, within AO353_24525at 5392.870 kb on + strand, within AO353_24525at 5392.871 kb on - strand, within AO353_24525at 5392.871 kb on - strand, within AO353_24525at 5392.920 kb on + strand, within AO353_24525at 5392.920 kb on + strand, within AO353_24525at 5392.920 kb on + strand, within AO353_24525at 5392.920 kb on + strand, within AO353_24525at 5392.920 kb on + strand, within AO353_24525at 5392.921 kb on - strand, within AO353_24525at 5392.921 kb on - strand, within AO353_24525at 5392.937 kb on + strandat 5392.937 kb on + strandat 5392.937 kb on + strandat 5392.938 kb on - strandat 5393.067 kb on + strandat 5393.067 kb on + strandat 5393.067 kb on + strandat 5393.126 kb on + strandat 5393.126 kb on + strandat 5393.127 kb on - strandat 5393.127 kb on - strandat 5393.127 kb on - strandat 5393.127 kb on - strandat 5393.133 kb on - strandat 5393.205 kb on + strand, within AO353_24530at 5393.205 kb on + strand, within AO353_24530at 5393.205 kb on + strand, within AO353_24530at 5393.205 kb on + strand, within AO353_24530at 5393.205 kb on + strand, within AO353_24530at 5393.206 kb on - strand, within AO353_24530at 5393.206 kb on - strand, within AO353_24530at 5393.206 kb on - strandat 5393.206 kb on - strand, within AO353_24530at 5393.247 kb on - strand, within AO353_24530at 5393.290 kb on - strand, within AO353_24530at 5393.333 kb on + strand, within AO353_24530at 5393.333 kb on + strand, within AO353_24530at 5393.333 kb on + strand, within AO353_24530at 5393.333 kb on + strand, within AO353_24530at 5393.333 kb on + strand, within AO353_24530at 5393.334 kb on - strand, within AO353_24530at 5393.334 kb on - strand, within AO353_24530at 5393.334 kb on - strand, within AO353_24530at 5393.334 kb on - strand, within AO353_24530at 5393.334 kb on - strand, within AO353_24530at 5393.334 kb on - strand, within AO353_24530at 5393.334 kb on - strand, within AO353_24530at 5393.334 kb on - strand, within AO353_24530at 5393.465 kb on + strandat 5393.465 kb on + strandat 5393.641 kb on + strand, within AO353_24535at 5393.641 kb on + strand, within AO353_24535at 5393.642 kb on - strand, within AO353_24535at 5393.645 kb on - strand, within AO353_24535at 5393.709 kb on + strandat 5393.709 kb on + strandat 5393.709 kb on + strandat 5393.709 kb on + strandat 5393.709 kb on + strandat 5393.710 kb on - strandat 5393.710 kb on - strandat 5393.710 kb on - strandat 5393.710 kb on - strandat 5393.719 kb on + strandat 5393.720 kb on - strandat 5393.722 kb on + strandat 5393.722 kb on + strandat 5393.723 kb on - strandat 5393.740 kb on - strandat 5393.740 kb on - strandat 5393.774 kb on - strandat 5393.819 kb on + strand, within AO353_24540at 5393.819 kb on + strand, within AO353_24540at 5393.819 kb on + strand, within AO353_24540at 5393.820 kb on - strand, within AO353_24540at 5393.879 kb on + strand, within AO353_24540at 5393.879 kb on + strand, within AO353_24540at 5393.880 kb on - strand, within AO353_24540at 5393.951 kb on + strand, within AO353_24540at 5394.001 kb on + strand, within AO353_24540at 5394.019 kb on + strand, within AO353_24540at 5394.019 kb on + strand, within AO353_24540at 5394.200 kb on + strandat 5394.200 kb on + strandat 5394.228 kb on + strand, within AO353_24545at 5394.228 kb on + strand, within AO353_24545at 5394.228 kb on + strand, within AO353_24545at 5394.228 kb on + strand, within AO353_24545at 5394.229 kb on - strand, within AO353_24545at 5394.299 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.366 kb on + strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.367 kb on - strand, within AO353_24545at 5394.396 kb on + strand, within AO353_24545at 5394.406 kb on + strand, within AO353_24545at 5394.406 kb on + strand, within AO353_24545at 5394.407 kb on - strand, within AO353_24545at 5394.429 kb on + strand, within AO353_24545at 5394.429 kb on + strand, within AO353_24545at 5394.429 kb on + strandat 5394.429 kb on + strand, within AO353_24545at 5394.429 kb on + strand, within AO353_24545at 5394.429 kb on + strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.430 kb on - strand, within AO353_24545at 5394.536 kb on + strandat 5394.536 kb on + strandat 5394.537 kb on - strandat 5394.580 kb on + strandat 5394.580 kb on + strandat 5394.581 kb on - strandat 5394.581 kb on - strandat 5394.581 kb on - strandat 5394.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,392,522 + AO353_24525 0.45 -0.2
5,392,522 + AO353_24525 0.45 +0.6
5,392,522 + AO353_24525 0.45 -0.4
5,392,523 - AO353_24525 0.45 -1.9
5,392,523 - AO353_24525 0.45 +0.7
5,392,523 - AO353_24525 0.45 -1.7
5,392,590 + AO353_24525 0.52 -0.3
5,392,590 + AO353_24525 0.52 -0.4
5,392,591 - AO353_24525 0.52 -0.1
5,392,594 + AO353_24525 0.52 -0.3
5,392,594 + AO353_24525 0.52 -0.9
5,392,594 + AO353_24525 0.52 -0.5
5,392,594 + AO353_24525 0.52 -0.9
5,392,594 + AO353_24525 0.52 +0.5
5,392,594 + AO353_24525 0.52 -0.1
5,392,595 - AO353_24525 0.53 +0.6
5,392,595 - AO353_24525 0.53 +0.7
5,392,695 + AO353_24525 0.63 -0.7
5,392,695 + AO353_24525 0.63 -0.1
5,392,696 - AO353_24525 0.64 +0.4
5,392,696 - AO353_24525 0.64 -1.1
5,392,696 - AO353_24525 0.64 -0.9
5,392,724 + AO353_24525 0.67 +0.1
5,392,725 - AO353_24525 0.67 -0.1
5,392,725 - AO353_24525 0.67 +0.6
5,392,725 - AO353_24525 0.67 -1.7
5,392,725 - AO353_24525 0.67 +0.1
5,392,778 - AO353_24525 0.73 -1.4
5,392,778 - AO353_24525 0.73 +0.9
5,392,784 + AO353_24525 0.73 -1.0
5,392,801 + AO353_24525 0.75 +0.0
5,392,801 + AO353_24525 0.75 -0.6
5,392,801 + AO353_24525 0.75 +0.3
5,392,801 + AO353_24525 0.75 -0.8
5,392,801 + AO353_24525 0.75 -0.8
5,392,801 + AO353_24525 0.75 +1.8
5,392,802 - AO353_24525 0.75 -2.3
5,392,802 - AO353_24525 0.75 +1.2
5,392,802 - AO353_24525 0.75 -0.4
5,392,802 - AO353_24525 0.75 +0.4
5,392,802 - AO353_24525 0.75 -0.1
5,392,802 - AO353_24525 0.75 +0.0
5,392,802 - AO353_24525 0.75 +0.2
5,392,802 - AO353_24525 0.75 +0.1
5,392,802 - AO353_24525 0.75 -0.4
5,392,802 - AO353_24525 0.75 -0.7
5,392,802 - AO353_24525 0.75 -1.2
5,392,804 - AO353_24525 0.75 -1.1
5,392,804 - AO353_24525 0.75 +0.1
5,392,870 + AO353_24525 0.83 -0.2
5,392,871 - AO353_24525 0.83 -0.5
5,392,871 - AO353_24525 0.83 +0.8
5,392,920 + AO353_24525 0.88 +0.5
5,392,920 + AO353_24525 0.88 +0.3
5,392,920 + AO353_24525 0.88 -0.3
5,392,920 + AO353_24525 0.88 -0.9
5,392,920 + AO353_24525 0.88 +0.2
5,392,921 - AO353_24525 0.88 +0.1
5,392,921 - AO353_24525 0.88 +0.2
5,392,937 + +0.9
5,392,937 + +0.1
5,392,937 + +0.5
5,392,938 - -0.4
5,393,067 + -0.2
5,393,067 + +0.9
5,393,067 + +1.1
5,393,126 + +0.0
5,393,126 + -0.6
5,393,127 - -0.5
5,393,127 - +0.9
5,393,127 - +0.6
5,393,127 - +0.8
5,393,133 - +0.7
5,393,205 + AO353_24530 0.19 -0.5
5,393,205 + AO353_24530 0.19 -1.8
5,393,205 + AO353_24530 0.19 -0.3
5,393,205 + AO353_24530 0.19 +0.4
5,393,205 + AO353_24530 0.19 +0.1
5,393,206 - AO353_24530 0.19 +0.6
5,393,206 - AO353_24530 0.19 +0.7
5,393,206 - -0.7
5,393,206 - AO353_24530 0.19 -1.2
5,393,247 - AO353_24530 0.33 -1.0
5,393,290 - AO353_24530 0.47 +0.4
5,393,333 + AO353_24530 0.61 +0.0
5,393,333 + AO353_24530 0.61 +1.7
5,393,333 + AO353_24530 0.61 +0.9
5,393,333 + AO353_24530 0.61 -0.1
5,393,333 + AO353_24530 0.61 +0.9
5,393,334 - AO353_24530 0.61 +0.5
5,393,334 - AO353_24530 0.61 +0.3
5,393,334 - AO353_24530 0.61 -0.3
5,393,334 - AO353_24530 0.61 -0.0
5,393,334 - AO353_24530 0.61 -0.6
5,393,334 - AO353_24530 0.61 -0.7
5,393,334 - AO353_24530 0.61 -0.4
5,393,334 - AO353_24530 0.61 +0.6
5,393,465 + -0.7
5,393,465 + -0.9
5,393,641 + AO353_24535 0.84 +0.1
5,393,641 + AO353_24535 0.84 +0.5
5,393,642 - AO353_24535 0.85 -1.0
5,393,645 - AO353_24535 0.86 +0.9
5,393,709 + -0.1
5,393,709 + -0.4
5,393,709 + +0.1
5,393,709 + -2.1
5,393,709 + +1.1
5,393,710 - +0.7
5,393,710 - +0.9
5,393,710 - -1.4
5,393,710 - -1.1
5,393,719 + -0.3
5,393,720 - -0.3
5,393,722 + -1.8
5,393,722 + -0.2
5,393,723 - -1.1
5,393,740 - -0.5
5,393,740 - +0.1
5,393,774 - -1.9
5,393,819 + AO353_24540 0.19 -2.1
5,393,819 + AO353_24540 0.19 +0.4
5,393,819 + AO353_24540 0.19 -1.1
5,393,820 - AO353_24540 0.19 -1.1
5,393,879 + AO353_24540 0.38 -1.6
5,393,879 + AO353_24540 0.38 -1.2
5,393,880 - AO353_24540 0.38 -0.9
5,393,951 + AO353_24540 0.61 -0.6
5,394,001 + AO353_24540 0.76 +0.6
5,394,019 + AO353_24540 0.82 +0.4
5,394,019 + AO353_24540 0.82 -0.7
5,394,200 + +0.9
5,394,200 + -0.4
5,394,228 + AO353_24545 0.14 +0.8
5,394,228 + AO353_24545 0.14 +0.4
5,394,228 + AO353_24545 0.14 +0.9
5,394,228 + AO353_24545 0.14 +0.3
5,394,229 - AO353_24545 0.14 +0.9
5,394,299 + AO353_24545 0.34 -0.6
5,394,366 + AO353_24545 0.53 -1.7
5,394,366 + AO353_24545 0.53 +0.9
5,394,366 + AO353_24545 0.53 +0.9
5,394,366 + AO353_24545 0.53 +1.2
5,394,366 + AO353_24545 0.53 +1.9
5,394,367 - AO353_24545 0.53 -0.7
5,394,367 - AO353_24545 0.53 +1.1
5,394,367 - AO353_24545 0.53 -1.4
5,394,367 - AO353_24545 0.53 -0.4
5,394,367 - AO353_24545 0.53 +0.2
5,394,396 + AO353_24545 0.61 +0.2
5,394,406 + AO353_24545 0.64 -0.3
5,394,406 + AO353_24545 0.64 -0.6
5,394,407 - AO353_24545 0.64 +1.1
5,394,429 + AO353_24545 0.70 +1.9
5,394,429 + AO353_24545 0.70 -0.1
5,394,429 + -1.4
5,394,429 + AO353_24545 0.70 +0.2
5,394,429 + AO353_24545 0.70 -0.9
5,394,429 + AO353_24545 0.70 -0.0
5,394,430 - AO353_24545 0.70 +0.1
5,394,430 - AO353_24545 0.70 -0.3
5,394,430 - AO353_24545 0.70 -0.2
5,394,430 - AO353_24545 0.70 -0.4
5,394,430 - AO353_24545 0.70 -0.9
5,394,430 - AO353_24545 0.70 -1.3
5,394,430 - AO353_24545 0.70 -0.8
5,394,536 + -0.4
5,394,536 + +0.4
5,394,537 - +1.9
5,394,580 + -0.3
5,394,580 + +0.9
5,394,581 - +0.6
5,394,581 - -0.0
5,394,581 - -1.0
5,394,581 - +0.1

Or see this region's nucleotide sequence