Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23925 and AO353_23930 are separated by 44 nucleotides AO353_23930 and AO353_23935 are separated by 23 nucleotides AO353_23935 and AO353_23940 are separated by 175 nucleotides
AO353_23925: AO353_23925 - histidine kinase, at 5,251,306 to 5,252,520
_23925
AO353_23930: AO353_23930 - chemotaxis protein CheY, at 5,252,565 to 5,252,942
_23930
AO353_23935: AO353_23935 - hypothetical protein, at 5,252,966 to 5,254,021
_23935
AO353_23940: AO353_23940 - hypothetical protein, at 5,254,197 to 5,256,332
_23940
Position (kb)
5252
5253
5254
5255 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5251.972 kb on - strand, within AO353_23925 at 5252.252 kb on - strand, within AO353_23925 at 5252.252 kb on - strand, within AO353_23925 at 5252.326 kb on - strand, within AO353_23925 at 5252.326 kb on - strand, within AO353_23925 at 5252.382 kb on - strand, within AO353_23925 at 5252.387 kb on + strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.448 kb on + strand at 5252.462 kb on + strand at 5252.463 kb on - strand at 5252.463 kb on - strand at 5252.542 kb on + strand at 5252.543 kb on - strand at 5252.626 kb on + strand, within AO353_23930 at 5252.627 kb on - strand, within AO353_23930 at 5252.637 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.723 kb on + strand, within AO353_23930 at 5252.723 kb on + strand, within AO353_23930 at 5252.768 kb on - strand, within AO353_23930 at 5252.940 kb on + strand at 5252.941 kb on - strand at 5252.961 kb on - strand at 5253.063 kb on + strand at 5253.063 kb on + strand at 5253.063 kb on + strand at 5253.181 kb on - strand, within AO353_23935 at 5253.212 kb on + strand, within AO353_23935 at 5253.213 kb on - strand, within AO353_23935 at 5253.213 kb on - strand, within AO353_23935 at 5253.275 kb on + strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.486 kb on + strand, within AO353_23935 at 5253.514 kb on + strand, within AO353_23935 at 5253.515 kb on - strand, within AO353_23935 at 5253.531 kb on + strand, within AO353_23935 at 5253.531 kb on + strand, within AO353_23935 at 5253.532 kb on - strand, within AO353_23935 at 5253.564 kb on + strand, within AO353_23935 at 5253.564 kb on + strand, within AO353_23935 at 5253.565 kb on - strand, within AO353_23935 at 5253.565 kb on - strand, within AO353_23935 at 5253.846 kb on + strand, within AO353_23935 at 5253.846 kb on + strand, within AO353_23935 at 5253.847 kb on - strand, within AO353_23935 at 5253.941 kb on - strand at 5253.941 kb on - strand at 5253.996 kb on + strand at 5253.996 kb on + strand at 5253.996 kb on + strand at 5253.996 kb on + strand at 5253.996 kb on + strand at 5253.996 kb on + strand at 5253.997 kb on - strand at 5253.997 kb on - strand at 5253.997 kb on - strand at 5253.997 kb on - strand at 5253.997 kb on - strand at 5253.997 kb on - strand at 5253.997 kb on - strand at 5253.997 kb on - strand at 5254.103 kb on + strand at 5254.111 kb on + strand at 5254.111 kb on + strand at 5254.111 kb on + strand at 5254.111 kb on + strand at 5254.111 kb on + strand at 5254.111 kb on + strand at 5254.111 kb on + strand at 5254.112 kb on - strand at 5254.112 kb on - strand at 5254.112 kb on - strand at 5254.112 kb on - strand at 5254.163 kb on + strand at 5254.164 kb on - strand at 5254.215 kb on + strand at 5254.215 kb on + strand at 5254.216 kb on - strand at 5254.216 kb on - strand at 5254.216 kb on - strand at 5254.296 kb on + strand at 5254.296 kb on + strand at 5254.296 kb on + strand at 5254.296 kb on + strand at 5254.297 kb on - strand at 5254.297 kb on - strand at 5254.297 kb on - strand at 5254.297 kb on - strand at 5254.722 kb on + strand, within AO353_23940 at 5254.722 kb on + strand, within AO353_23940 at 5254.722 kb on + strand, within AO353_23940 at 5254.723 kb on - strand, within AO353_23940 at 5254.723 kb on - strand, within AO353_23940 at 5254.723 kb on - strand, within AO353_23940 at 5254.872 kb on + strand, within AO353_23940 at 5254.872 kb on + strand, within AO353_23940 at 5254.873 kb on - strand, within AO353_23940 at 5254.873 kb on - strand, within AO353_23940 at 5254.873 kb on - strand, within AO353_23940 at 5254.873 kb on - strand, within AO353_23940 at 5254.873 kb on - strand, within AO353_23940 at 5254.875 kb on + strand, within AO353_23940
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 5,251,972 - AO353_23925 0.55 +1.1 5,252,252 - AO353_23925 0.78 -0.8 5,252,252 - AO353_23925 0.78 -0.3 5,252,326 - AO353_23925 0.84 +0.9 5,252,326 - AO353_23925 0.84 -0.3 5,252,382 - AO353_23925 0.89 +0.5 5,252,387 + AO353_23925 0.89 +1.1 5,252,392 - AO353_23925 0.89 -0.6 5,252,392 - AO353_23925 0.89 -0.3 5,252,392 - AO353_23925 0.89 -0.4 5,252,392 - AO353_23925 0.89 -0.9 5,252,448 + +0.1 5,252,462 + -0.5 5,252,463 - -1.9 5,252,463 - -0.9 5,252,542 + +0.7 5,252,543 - -0.5 5,252,626 + AO353_23930 0.16 -1.7 5,252,627 - AO353_23930 0.16 -1.4 5,252,637 + AO353_23930 0.19 +0.4 5,252,674 + AO353_23930 0.29 -1.1 5,252,674 + AO353_23930 0.29 +1.5 5,252,674 + AO353_23930 0.29 +0.6 5,252,674 + AO353_23930 0.29 -0.7 5,252,674 + -0.7 5,252,675 - AO353_23930 0.29 -0.4 5,252,675 - AO353_23930 0.29 +0.0 5,252,675 - AO353_23930 0.29 -1.3 5,252,675 - AO353_23930 0.29 -1.5 5,252,723 + AO353_23930 0.42 +0.7 5,252,723 + AO353_23930 0.42 -0.3 5,252,768 - AO353_23930 0.54 -0.4 5,252,940 + +0.3 5,252,941 - -0.3 5,252,961 - -0.8 5,253,063 + +1.5 5,253,063 + -0.1 5,253,063 + -1.8 5,253,181 - AO353_23935 0.20 -1.4 5,253,212 + AO353_23935 0.23 +0.1 5,253,213 - AO353_23935 0.23 +0.7 5,253,213 - AO353_23935 0.23 +0.2 5,253,275 + AO353_23935 0.29 -1.0 5,253,276 - AO353_23935 0.29 -0.1 5,253,276 - AO353_23935 0.29 +1.2 5,253,276 - AO353_23935 0.29 -1.7 5,253,486 + AO353_23935 0.49 +0.5 5,253,514 + AO353_23935 0.52 +0.9 5,253,515 - AO353_23935 0.52 +0.3 5,253,531 + AO353_23935 0.54 +1.4 5,253,531 + AO353_23935 0.54 +1.7 5,253,532 - AO353_23935 0.54 +1.5 5,253,564 + AO353_23935 0.57 +0.3 5,253,564 + AO353_23935 0.57 +3.1 5,253,565 - AO353_23935 0.57 -0.7 5,253,565 - AO353_23935 0.57 -0.3 5,253,846 + AO353_23935 0.83 -0.3 5,253,846 + AO353_23935 0.83 +1.1 5,253,847 - AO353_23935 0.83 +1.7 5,253,941 - +0.1 5,253,941 - +0.6 5,253,996 + +0.3 5,253,996 + +0.3 5,253,996 + +0.2 5,253,996 + -1.2 5,253,996 + -0.5 5,253,996 + -0.9 5,253,997 - -0.4 5,253,997 - +0.7 5,253,997 - -1.4 5,253,997 - +0.0 5,253,997 - -1.3 5,253,997 - -1.1 5,253,997 - -1.4 5,253,997 - +0.8 5,254,103 + -0.2 5,254,111 + +0.9 5,254,111 + -1.1 5,254,111 + +0.1 5,254,111 + +0.6 5,254,111 + +0.1 5,254,111 + -0.4 5,254,111 + -0.0 5,254,112 - +1.9 5,254,112 - -1.4 5,254,112 - -2.1 5,254,112 - +1.2 5,254,163 + -0.5 5,254,164 - +0.8 5,254,215 + -1.3 5,254,215 + -0.4 5,254,216 - -2.3 5,254,216 - +0.2 5,254,216 - +0.2 5,254,296 + -0.3 5,254,296 + +0.3 5,254,296 + -1.0 5,254,296 + -0.4 5,254,297 - -0.0 5,254,297 - +1.9 5,254,297 - +0.8 5,254,297 - +0.1 5,254,722 + AO353_23940 0.25 +0.1 5,254,722 + AO353_23940 0.25 +0.9 5,254,722 + AO353_23940 0.25 +0.3 5,254,723 - AO353_23940 0.25 -0.3 5,254,723 - AO353_23940 0.25 -1.3 5,254,723 - AO353_23940 0.25 -0.2 5,254,872 + AO353_23940 0.32 -0.5 5,254,872 + AO353_23940 0.32 -0.8 5,254,873 - AO353_23940 0.32 -0.4 5,254,873 - AO353_23940 0.32 -0.1 5,254,873 - AO353_23940 0.32 +0.3 5,254,873 - AO353_23940 0.32 +1.9 5,254,873 - AO353_23940 0.32 -0.1 5,254,875 + AO353_23940 0.32 +1.9
Or see this region's nucleotide sequence