Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23935

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23925 and AO353_23930 are separated by 44 nucleotidesAO353_23930 and AO353_23935 are separated by 23 nucleotidesAO353_23935 and AO353_23940 are separated by 175 nucleotides AO353_23925: AO353_23925 - histidine kinase, at 5,251,306 to 5,252,520 _23925 AO353_23930: AO353_23930 - chemotaxis protein CheY, at 5,252,565 to 5,252,942 _23930 AO353_23935: AO353_23935 - hypothetical protein, at 5,252,966 to 5,254,021 _23935 AO353_23940: AO353_23940 - hypothetical protein, at 5,254,197 to 5,256,332 _23940 Position (kb) 5252 5253 5254 5255Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5251.972 kb on - strand, within AO353_23925at 5252.252 kb on - strand, within AO353_23925at 5252.252 kb on - strand, within AO353_23925at 5252.326 kb on - strand, within AO353_23925at 5252.326 kb on - strand, within AO353_23925at 5252.382 kb on - strand, within AO353_23925at 5252.387 kb on + strand, within AO353_23925at 5252.392 kb on - strand, within AO353_23925at 5252.392 kb on - strand, within AO353_23925at 5252.392 kb on - strand, within AO353_23925at 5252.392 kb on - strand, within AO353_23925at 5252.448 kb on + strandat 5252.462 kb on + strandat 5252.463 kb on - strandat 5252.463 kb on - strandat 5252.542 kb on + strandat 5252.543 kb on - strandat 5252.626 kb on + strand, within AO353_23930at 5252.627 kb on - strand, within AO353_23930at 5252.637 kb on + strand, within AO353_23930at 5252.674 kb on + strand, within AO353_23930at 5252.674 kb on + strand, within AO353_23930at 5252.674 kb on + strand, within AO353_23930at 5252.674 kb on + strand, within AO353_23930at 5252.674 kb on + strandat 5252.675 kb on - strand, within AO353_23930at 5252.675 kb on - strand, within AO353_23930at 5252.675 kb on - strand, within AO353_23930at 5252.675 kb on - strand, within AO353_23930at 5252.723 kb on + strand, within AO353_23930at 5252.723 kb on + strand, within AO353_23930at 5252.768 kb on - strand, within AO353_23930at 5252.940 kb on + strandat 5252.941 kb on - strandat 5252.961 kb on - strandat 5253.063 kb on + strandat 5253.063 kb on + strandat 5253.063 kb on + strandat 5253.181 kb on - strand, within AO353_23935at 5253.212 kb on + strand, within AO353_23935at 5253.213 kb on - strand, within AO353_23935at 5253.213 kb on - strand, within AO353_23935at 5253.275 kb on + strand, within AO353_23935at 5253.276 kb on - strand, within AO353_23935at 5253.276 kb on - strand, within AO353_23935at 5253.276 kb on - strand, within AO353_23935at 5253.486 kb on + strand, within AO353_23935at 5253.514 kb on + strand, within AO353_23935at 5253.515 kb on - strand, within AO353_23935at 5253.531 kb on + strand, within AO353_23935at 5253.531 kb on + strand, within AO353_23935at 5253.532 kb on - strand, within AO353_23935at 5253.564 kb on + strand, within AO353_23935at 5253.564 kb on + strand, within AO353_23935at 5253.565 kb on - strand, within AO353_23935at 5253.565 kb on - strand, within AO353_23935at 5253.846 kb on + strand, within AO353_23935at 5253.846 kb on + strand, within AO353_23935at 5253.847 kb on - strand, within AO353_23935at 5253.941 kb on - strandat 5253.941 kb on - strandat 5253.996 kb on + strandat 5253.996 kb on + strandat 5253.996 kb on + strandat 5253.996 kb on + strandat 5253.996 kb on + strandat 5253.996 kb on + strandat 5253.997 kb on - strandat 5253.997 kb on - strandat 5253.997 kb on - strandat 5253.997 kb on - strandat 5253.997 kb on - strandat 5253.997 kb on - strandat 5253.997 kb on - strandat 5253.997 kb on - strandat 5254.103 kb on + strandat 5254.111 kb on + strandat 5254.111 kb on + strandat 5254.111 kb on + strandat 5254.111 kb on + strandat 5254.111 kb on + strandat 5254.111 kb on + strandat 5254.111 kb on + strandat 5254.112 kb on - strandat 5254.112 kb on - strandat 5254.112 kb on - strandat 5254.112 kb on - strandat 5254.163 kb on + strandat 5254.164 kb on - strandat 5254.215 kb on + strandat 5254.215 kb on + strandat 5254.216 kb on - strandat 5254.216 kb on - strandat 5254.216 kb on - strandat 5254.296 kb on + strandat 5254.296 kb on + strandat 5254.296 kb on + strandat 5254.296 kb on + strandat 5254.297 kb on - strandat 5254.297 kb on - strandat 5254.297 kb on - strandat 5254.297 kb on - strandat 5254.722 kb on + strand, within AO353_23940at 5254.722 kb on + strand, within AO353_23940at 5254.722 kb on + strand, within AO353_23940at 5254.723 kb on - strand, within AO353_23940at 5254.723 kb on - strand, within AO353_23940at 5254.723 kb on - strand, within AO353_23940at 5254.872 kb on + strand, within AO353_23940at 5254.872 kb on + strand, within AO353_23940at 5254.873 kb on - strand, within AO353_23940at 5254.873 kb on - strand, within AO353_23940at 5254.873 kb on - strand, within AO353_23940at 5254.873 kb on - strand, within AO353_23940at 5254.873 kb on - strand, within AO353_23940at 5254.875 kb on + strand, within AO353_23940

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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5,251,972 - AO353_23925 0.55 +1.1
5,252,252 - AO353_23925 0.78 -0.8
5,252,252 - AO353_23925 0.78 -0.3
5,252,326 - AO353_23925 0.84 +0.9
5,252,326 - AO353_23925 0.84 -0.3
5,252,382 - AO353_23925 0.89 +0.5
5,252,387 + AO353_23925 0.89 +1.1
5,252,392 - AO353_23925 0.89 -0.6
5,252,392 - AO353_23925 0.89 -0.3
5,252,392 - AO353_23925 0.89 -0.4
5,252,392 - AO353_23925 0.89 -0.9
5,252,448 + +0.1
5,252,462 + -0.5
5,252,463 - -1.9
5,252,463 - -0.9
5,252,542 + +0.7
5,252,543 - -0.5
5,252,626 + AO353_23930 0.16 -1.7
5,252,627 - AO353_23930 0.16 -1.4
5,252,637 + AO353_23930 0.19 +0.4
5,252,674 + AO353_23930 0.29 -1.1
5,252,674 + AO353_23930 0.29 +1.5
5,252,674 + AO353_23930 0.29 +0.6
5,252,674 + AO353_23930 0.29 -0.7
5,252,674 + -0.7
5,252,675 - AO353_23930 0.29 -0.4
5,252,675 - AO353_23930 0.29 +0.0
5,252,675 - AO353_23930 0.29 -1.3
5,252,675 - AO353_23930 0.29 -1.5
5,252,723 + AO353_23930 0.42 +0.7
5,252,723 + AO353_23930 0.42 -0.3
5,252,768 - AO353_23930 0.54 -0.4
5,252,940 + +0.3
5,252,941 - -0.3
5,252,961 - -0.8
5,253,063 + +1.5
5,253,063 + -0.1
5,253,063 + -1.8
5,253,181 - AO353_23935 0.20 -1.4
5,253,212 + AO353_23935 0.23 +0.1
5,253,213 - AO353_23935 0.23 +0.7
5,253,213 - AO353_23935 0.23 +0.2
5,253,275 + AO353_23935 0.29 -1.0
5,253,276 - AO353_23935 0.29 -0.1
5,253,276 - AO353_23935 0.29 +1.2
5,253,276 - AO353_23935 0.29 -1.7
5,253,486 + AO353_23935 0.49 +0.5
5,253,514 + AO353_23935 0.52 +0.9
5,253,515 - AO353_23935 0.52 +0.3
5,253,531 + AO353_23935 0.54 +1.4
5,253,531 + AO353_23935 0.54 +1.7
5,253,532 - AO353_23935 0.54 +1.5
5,253,564 + AO353_23935 0.57 +0.3
5,253,564 + AO353_23935 0.57 +3.1
5,253,565 - AO353_23935 0.57 -0.7
5,253,565 - AO353_23935 0.57 -0.3
5,253,846 + AO353_23935 0.83 -0.3
5,253,846 + AO353_23935 0.83 +1.1
5,253,847 - AO353_23935 0.83 +1.7
5,253,941 - +0.1
5,253,941 - +0.6
5,253,996 + +0.3
5,253,996 + +0.3
5,253,996 + +0.2
5,253,996 + -1.2
5,253,996 + -0.5
5,253,996 + -0.9
5,253,997 - -0.4
5,253,997 - +0.7
5,253,997 - -1.4
5,253,997 - +0.0
5,253,997 - -1.3
5,253,997 - -1.1
5,253,997 - -1.4
5,253,997 - +0.8
5,254,103 + -0.2
5,254,111 + +0.9
5,254,111 + -1.1
5,254,111 + +0.1
5,254,111 + +0.6
5,254,111 + +0.1
5,254,111 + -0.4
5,254,111 + -0.0
5,254,112 - +1.9
5,254,112 - -1.4
5,254,112 - -2.1
5,254,112 - +1.2
5,254,163 + -0.5
5,254,164 - +0.8
5,254,215 + -1.3
5,254,215 + -0.4
5,254,216 - -2.3
5,254,216 - +0.2
5,254,216 - +0.2
5,254,296 + -0.3
5,254,296 + +0.3
5,254,296 + -1.0
5,254,296 + -0.4
5,254,297 - -0.0
5,254,297 - +1.9
5,254,297 - +0.8
5,254,297 - +0.1
5,254,722 + AO353_23940 0.25 +0.1
5,254,722 + AO353_23940 0.25 +0.9
5,254,722 + AO353_23940 0.25 +0.3
5,254,723 - AO353_23940 0.25 -0.3
5,254,723 - AO353_23940 0.25 -1.3
5,254,723 - AO353_23940 0.25 -0.2
5,254,872 + AO353_23940 0.32 -0.5
5,254,872 + AO353_23940 0.32 -0.8
5,254,873 - AO353_23940 0.32 -0.4
5,254,873 - AO353_23940 0.32 -0.1
5,254,873 - AO353_23940 0.32 +0.3
5,254,873 - AO353_23940 0.32 +1.9
5,254,873 - AO353_23940 0.32 -0.1
5,254,875 + AO353_23940 0.32 +1.9

Or see this region's nucleotide sequence