Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22035

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22030 and AO353_22035 are separated by 88 nucleotidesAO353_22035 and AO353_22040 are separated by 100 nucleotidesAO353_22040 and AO353_22045 overlap by 4 nucleotides AO353_22030: AO353_22030 - transcriptional regulator, at 4,824,379 to 4,825,908 _22030 AO353_22035: AO353_22035 - pyridoxine 5'-phosphate oxidase, at 4,825,997 to 4,826,644 _22035 AO353_22040: AO353_22040 - molybdenum cofactor biosynthesis protein B, at 4,826,745 to 4,827,299 _22040 AO353_22045: AO353_22045 - molybdenum cofactor biosynthesis protein MoaA, at 4,827,296 to 4,828,531 _22045 Position (kb) 4825 4826 4827Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4825.091 kb on + strand, within AO353_22030at 4825.405 kb on + strand, within AO353_22030at 4825.423 kb on + strand, within AO353_22030at 4825.564 kb on + strand, within AO353_22030at 4825.564 kb on + strand, within AO353_22030at 4825.565 kb on - strand, within AO353_22030at 4825.565 kb on - strand, within AO353_22030at 4825.565 kb on - strand, within AO353_22030at 4825.566 kb on + strand, within AO353_22030at 4825.566 kb on + strand, within AO353_22030at 4825.566 kb on + strand, within AO353_22030at 4825.566 kb on + strand, within AO353_22030at 4825.567 kb on - strand, within AO353_22030at 4825.567 kb on - strand, within AO353_22030at 4825.567 kb on - strand, within AO353_22030at 4825.567 kb on - strand, within AO353_22030at 4825.692 kb on + strand, within AO353_22030at 4825.902 kb on + strandat 4825.902 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.906 kb on + strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4825.907 kb on - strandat 4826.027 kb on - strandat 4826.030 kb on + strandat 4826.030 kb on + strandat 4826.030 kb on + strandat 4826.030 kb on + strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.031 kb on - strandat 4826.047 kb on - strandat 4826.140 kb on + strand, within AO353_22035at 4826.141 kb on - strand, within AO353_22035at 4826.141 kb on - strand, within AO353_22035at 4826.225 kb on - strand, within AO353_22035at 4826.240 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.326 kb on + strand, within AO353_22035at 4826.372 kb on + strand, within AO353_22035at 4826.372 kb on + strand, within AO353_22035at 4826.373 kb on - strand, within AO353_22035at 4826.650 kb on + strandat 4826.650 kb on + strandat 4826.650 kb on + strandat 4826.650 kb on + strandat 4826.651 kb on - strandat 4826.667 kb on + strandat 4826.683 kb on + strandat 4826.683 kb on + strandat 4826.683 kb on + strandat 4826.683 kb on + strandat 4826.683 kb on + strandat 4826.684 kb on - strandat 4826.684 kb on - strandat 4826.728 kb on + strandat 4826.728 kb on + strandat 4826.728 kb on + strandat 4826.807 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.906 kb on + strand, within AO353_22040at 4826.907 kb on - strand, within AO353_22040at 4826.907 kb on - strand, within AO353_22040at 4826.907 kb on - strand, within AO353_22040at 4826.907 kb on - strand, within AO353_22040at 4826.910 kb on + strand, within AO353_22040at 4826.910 kb on + strand, within AO353_22040at 4826.911 kb on - strand, within AO353_22040at 4826.911 kb on - strand, within AO353_22040at 4826.911 kb on - strand, within AO353_22040at 4826.911 kb on - strand, within AO353_22040at 4826.929 kb on + strand, within AO353_22040at 4826.929 kb on + strand, within AO353_22040at 4826.930 kb on - strand, within AO353_22040at 4826.965 kb on + strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4826.966 kb on - strand, within AO353_22040at 4827.005 kb on + strand, within AO353_22040at 4827.006 kb on - strand, within AO353_22040at 4827.488 kb on + strand, within AO353_22045

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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4,825,091 + AO353_22030 0.47 -0.0
4,825,405 + AO353_22030 0.67 -1.2
4,825,423 + AO353_22030 0.68 +0.1
4,825,564 + AO353_22030 0.77 -0.2
4,825,564 + AO353_22030 0.77 -0.5
4,825,565 - AO353_22030 0.78 -0.2
4,825,565 - AO353_22030 0.78 +0.5
4,825,565 - AO353_22030 0.78 -0.3
4,825,566 + AO353_22030 0.78 -1.4
4,825,566 + AO353_22030 0.78 +0.2
4,825,566 + AO353_22030 0.78 +0.2
4,825,566 + AO353_22030 0.78 -1.6
4,825,567 - AO353_22030 0.78 -0.3
4,825,567 - AO353_22030 0.78 -0.9
4,825,567 - AO353_22030 0.78 -1.3
4,825,567 - AO353_22030 0.78 +0.5
4,825,692 + AO353_22030 0.86 +0.5
4,825,902 + +0.5
4,825,902 + +1.1
4,825,906 + +0.1
4,825,906 + +0.5
4,825,906 + -1.7
4,825,906 + +0.8
4,825,906 + -1.3
4,825,906 + -0.1
4,825,906 + +1.7
4,825,906 + +0.2
4,825,907 - -0.8
4,825,907 - +0.1
4,825,907 - +0.3
4,825,907 - -1.2
4,825,907 - -0.8
4,825,907 - -0.1
4,826,027 - -0.9
4,826,030 + -1.4
4,826,030 + -0.4
4,826,030 + +0.1
4,826,030 + +0.7
4,826,031 - +0.6
4,826,031 - +0.1
4,826,031 - -0.1
4,826,031 - -1.3
4,826,031 - +0.3
4,826,031 - +1.4
4,826,047 - -1.4
4,826,140 + AO353_22035 0.22 -0.3
4,826,141 - AO353_22035 0.22 +0.8
4,826,141 - AO353_22035 0.22 +0.3
4,826,225 - AO353_22035 0.35 -0.7
4,826,240 + AO353_22035 0.38 -0.1
4,826,326 + AO353_22035 0.51 +0.2
4,826,326 + AO353_22035 0.51 +0.9
4,826,326 + AO353_22035 0.51 -0.9
4,826,326 + AO353_22035 0.51 +0.2
4,826,326 + AO353_22035 0.51 +0.4
4,826,372 + AO353_22035 0.58 +1.4
4,826,372 + AO353_22035 0.58 +0.3
4,826,373 - AO353_22035 0.58 +0.9
4,826,650 + +3.1
4,826,650 + -0.5
4,826,650 + +0.3
4,826,650 + -1.1
4,826,651 - +1.6
4,826,667 + +0.8
4,826,683 + -1.3
4,826,683 + -0.4
4,826,683 + -0.3
4,826,683 + -0.5
4,826,683 + -0.6
4,826,684 - -0.5
4,826,684 - -0.9
4,826,728 + +0.6
4,826,728 + -0.2
4,826,728 + +1.3
4,826,807 + AO353_22040 0.11 -1.3
4,826,906 + AO353_22040 0.29 -1.6
4,826,906 + AO353_22040 0.29 -0.4
4,826,906 + AO353_22040 0.29 +0.7
4,826,906 + AO353_22040 0.29 -1.7
4,826,906 + AO353_22040 0.29 -0.4
4,826,906 + AO353_22040 0.29 -0.2
4,826,906 + AO353_22040 0.29 -0.9
4,826,906 + AO353_22040 0.29 -1.2
4,826,906 + AO353_22040 0.29 +2.3
4,826,907 - AO353_22040 0.29 +1.9
4,826,907 - AO353_22040 0.29 -0.0
4,826,907 - AO353_22040 0.29 +1.4
4,826,907 - AO353_22040 0.29 +0.2
4,826,910 + AO353_22040 0.30 -1.5
4,826,910 + AO353_22040 0.30 -0.5
4,826,911 - AO353_22040 0.30 +1.1
4,826,911 - AO353_22040 0.30 +0.7
4,826,911 - AO353_22040 0.30 +0.5
4,826,911 - AO353_22040 0.30 +0.7
4,826,929 + AO353_22040 0.33 -1.5
4,826,929 + AO353_22040 0.33 -2.1
4,826,930 - AO353_22040 0.33 +0.1
4,826,965 + AO353_22040 0.40 -0.1
4,826,966 - AO353_22040 0.40 -1.3
4,826,966 - AO353_22040 0.40 -1.2
4,826,966 - AO353_22040 0.40 -0.5
4,826,966 - AO353_22040 0.40 -0.8
4,826,966 - AO353_22040 0.40 -0.5
4,827,005 + AO353_22040 0.47 -0.7
4,827,006 - AO353_22040 0.47 -0.5
4,827,488 + AO353_22045 0.16 +0.1

Or see this region's nucleotide sequence