Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18745

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18730 and AO353_18735 are separated by 69 nucleotidesAO353_18735 and AO353_18740 are separated by 0 nucleotidesAO353_18740 and AO353_18745 overlap by 1 nucleotidesAO353_18745 and AO353_18750 are separated by 24 nucleotidesAO353_18750 and AO353_18755 are separated by 3 nucleotides AO353_18730: AO353_18730 - flagellar motor switch protein FliM, at 4,120,712 to 4,121,680 _18730 AO353_18735: AO353_18735 - flagellar motor switch protein, at 4,121,750 to 4,122,211 _18735 AO353_18740: AO353_18740 - flagellar assembly protein FliO, at 4,122,212 to 4,122,643 _18740 AO353_18745: AO353_18745 - flagellar biosynthesis protein flip, at 4,122,643 to 4,123,392 _18745 AO353_18750: AO353_18750 - flagellar biosynthetic protein FliQ, at 4,123,417 to 4,123,686 _18750 AO353_18755: AO353_18755 - flagellar biosynthetic protein FliR, at 4,123,690 to 4,124,472 _18755 Position (kb) 4122 4123 4124Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4121.705 kb on + strandat 4121.705 kb on + strandat 4121.706 kb on - strandat 4121.706 kb on - strandat 4121.767 kb on + strandat 4122.231 kb on + strandat 4122.231 kb on + strandat 4122.231 kb on + strandat 4122.231 kb on + strandat 4122.232 kb on - strandat 4122.232 kb on - strandat 4122.232 kb on - strandat 4122.628 kb on + strandat 4122.628 kb on + strandat 4122.629 kb on - strandat 4122.634 kb on + strandat 4122.634 kb on + strandat 4122.641 kb on + strandat 4122.641 kb on + strandat 4122.641 kb on + strandat 4122.641 kb on + strandat 4122.641 kb on + strandat 4122.641 kb on + strandat 4122.641 kb on + strandat 4122.642 kb on - strandat 4122.642 kb on - strandat 4122.642 kb on - strandat 4122.642 kb on - strandat 4122.642 kb on - strandat 4122.763 kb on + strand, within AO353_18745at 4122.764 kb on - strand, within AO353_18745at 4122.997 kb on + strand, within AO353_18745at 4122.997 kb on + strand, within AO353_18745at 4122.997 kb on + strand, within AO353_18745at 4123.390 kb on + strandat 4123.391 kb on - strandat 4123.396 kb on + strandat 4123.396 kb on + strandat 4123.396 kb on + strandat 4123.396 kb on + strandat 4123.396 kb on + strandat 4123.396 kb on + strandat 4123.396 kb on + strandat 4123.396 kb on + strandat 4123.397 kb on - strandat 4123.397 kb on - strandat 4123.397 kb on - strandat 4123.397 kb on - strandat 4123.397 kb on - strandat 4123.397 kb on - strandat 4123.397 kb on - strandat 4123.397 kb on - strandat 4123.436 kb on + strandat 4123.436 kb on + strandat 4123.484 kb on + strand, within AO353_18750at 4123.625 kb on + strand, within AO353_18750at 4123.625 kb on + strand, within AO353_18750at 4123.625 kb on + strand, within AO353_18750at 4123.626 kb on - strand, within AO353_18750at 4123.626 kb on - strand, within AO353_18750at 4123.626 kb on - strand, within AO353_18750at 4123.642 kb on + strand, within AO353_18750at 4123.642 kb on + strand, within AO353_18750at 4123.642 kb on + strand, within AO353_18750at 4123.642 kb on + strand, within AO353_18750at 4123.642 kb on + strand, within AO353_18750at 4123.642 kb on + strand, within AO353_18750at 4123.642 kb on + strand, within AO353_18750at 4123.642 kb on + strand, within AO353_18750at 4123.643 kb on - strand, within AO353_18750at 4123.643 kb on - strand, within AO353_18750at 4123.643 kb on - strand, within AO353_18750at 4123.643 kb on - strand, within AO353_18750at 4123.643 kb on - strand, within AO353_18750at 4123.643 kb on - strand, within AO353_18750at 4123.643 kb on - strand, within AO353_18750at 4123.643 kb on - strand, within AO353_18750at 4123.657 kb on + strand, within AO353_18750at 4123.657 kb on + strand, within AO353_18750at 4123.658 kb on - strand, within AO353_18750at 4123.658 kb on - strand, within AO353_18750at 4123.658 kb on - strand, within AO353_18750at 4123.658 kb on - strand, within AO353_18750at 4123.685 kb on - strandat 4123.725 kb on + strandat 4123.726 kb on - strandat 4123.818 kb on + strand, within AO353_18755at 4123.819 kb on - strand, within AO353_18755at 4123.819 kb on - strand, within AO353_18755at 4123.829 kb on - strand, within AO353_18755at 4123.829 kb on - strand, within AO353_18755at 4123.829 kb on - strand, within AO353_18755at 4123.829 kb on - strand, within AO353_18755at 4123.829 kb on - strand, within AO353_18755at 4123.931 kb on + strand, within AO353_18755at 4123.931 kb on + strand, within AO353_18755at 4123.931 kb on + strand, within AO353_18755at 4123.931 kb on + strand, within AO353_18755at 4123.931 kb on + strand, within AO353_18755at 4123.932 kb on - strand, within AO353_18755at 4123.932 kb on - strand, within AO353_18755at 4123.932 kb on - strand, within AO353_18755at 4124.249 kb on + strand, within AO353_18755at 4124.250 kb on - strand, within AO353_18755at 4124.250 kb on - strand, within AO353_18755at 4124.331 kb on + strand, within AO353_18755at 4124.332 kb on - strand, within AO353_18755at 4124.332 kb on - strand, within AO353_18755

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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4,121,705 + -2.2
4,121,705 + -2.4
4,121,706 - +0.2
4,121,706 - +0.5
4,121,767 + -0.5
4,122,231 + -0.9
4,122,231 + -0.6
4,122,231 + +0.5
4,122,231 + -0.7
4,122,232 - +0.2
4,122,232 - +0.2
4,122,232 - +0.7
4,122,628 + +0.1
4,122,628 + -0.2
4,122,629 - -0.6
4,122,634 + +0.1
4,122,634 + -0.6
4,122,641 + +0.5
4,122,641 + +0.7
4,122,641 + -0.2
4,122,641 + +0.1
4,122,641 + -0.5
4,122,641 + +1.5
4,122,641 + +0.2
4,122,642 - +2.3
4,122,642 - -1.4
4,122,642 - -0.7
4,122,642 - +0.1
4,122,642 - -1.2
4,122,763 + AO353_18745 0.16 +0.4
4,122,764 - AO353_18745 0.16 +1.3
4,122,997 + AO353_18745 0.47 +1.7
4,122,997 + AO353_18745 0.47 +0.7
4,122,997 + AO353_18745 0.47 +0.2
4,123,390 + +2.3
4,123,391 - -0.7
4,123,396 + -1.0
4,123,396 + -0.0
4,123,396 + -0.1
4,123,396 + +0.1
4,123,396 + +1.6
4,123,396 + +0.7
4,123,396 + +0.9
4,123,396 + -1.7
4,123,397 - +0.5
4,123,397 - +0.3
4,123,397 - -1.0
4,123,397 - -0.5
4,123,397 - -0.8
4,123,397 - -0.1
4,123,397 - +0.7
4,123,397 - +0.6
4,123,436 + +0.8
4,123,436 + -1.0
4,123,484 + AO353_18750 0.25 +0.6
4,123,625 + AO353_18750 0.77 +1.3
4,123,625 + AO353_18750 0.77 +2.1
4,123,625 + AO353_18750 0.77 +0.1
4,123,626 - AO353_18750 0.77 -0.0
4,123,626 - AO353_18750 0.77 +0.9
4,123,626 - AO353_18750 0.77 +0.7
4,123,642 + AO353_18750 0.83 +0.1
4,123,642 + AO353_18750 0.83 +0.6
4,123,642 + AO353_18750 0.83 -0.3
4,123,642 + AO353_18750 0.83 -0.3
4,123,642 + AO353_18750 0.83 -0.0
4,123,642 + AO353_18750 0.83 +0.7
4,123,642 + AO353_18750 0.83 +1.3
4,123,642 + AO353_18750 0.83 +0.1
4,123,643 - AO353_18750 0.84 -0.6
4,123,643 - AO353_18750 0.84 -1.4
4,123,643 - AO353_18750 0.84 -0.1
4,123,643 - AO353_18750 0.84 -0.4
4,123,643 - AO353_18750 0.84 +0.1
4,123,643 - AO353_18750 0.84 -0.1
4,123,643 - AO353_18750 0.84 +1.6
4,123,643 - AO353_18750 0.84 +0.2
4,123,657 + AO353_18750 0.89 -1.5
4,123,657 + AO353_18750 0.89 -1.2
4,123,658 - AO353_18750 0.89 +0.9
4,123,658 - AO353_18750 0.89 -1.6
4,123,658 - AO353_18750 0.89 +1.3
4,123,658 - AO353_18750 0.89 -0.2
4,123,685 - +0.1
4,123,725 + -0.8
4,123,726 - -0.4
4,123,818 + AO353_18755 0.16 -0.0
4,123,819 - AO353_18755 0.16 -0.8
4,123,819 - AO353_18755 0.16 +0.3
4,123,829 - AO353_18755 0.18 +0.6
4,123,829 - AO353_18755 0.18 +0.1
4,123,829 - AO353_18755 0.18 +0.1
4,123,829 - AO353_18755 0.18 +0.5
4,123,829 - AO353_18755 0.18 +0.6
4,123,931 + AO353_18755 0.31 +2.3
4,123,931 + AO353_18755 0.31 +0.0
4,123,931 + AO353_18755 0.31 +0.9
4,123,931 + AO353_18755 0.31 +0.2
4,123,931 + AO353_18755 0.31 -0.1
4,123,932 - AO353_18755 0.31 -0.7
4,123,932 - AO353_18755 0.31 -0.5
4,123,932 - AO353_18755 0.31 -0.9
4,124,249 + AO353_18755 0.71 +0.7
4,124,250 - AO353_18755 0.72 -0.7
4,124,250 - AO353_18755 0.72 +0.4
4,124,331 + AO353_18755 0.82 -2.8
4,124,332 - AO353_18755 0.82 +0.1
4,124,332 - AO353_18755 0.82 +0.2

Or see this region's nucleotide sequence