Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16870

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16860 and AO353_16865 are separated by 67 nucleotidesAO353_16865 and AO353_16870 are separated by 83 nucleotidesAO353_16870 and AO353_16875 are separated by 115 nucleotides AO353_16860: AO353_16860 - hypothetical protein, at 3,730,563 to 3,731,030 _16860 AO353_16865: AO353_16865 - RNA-binding protein, at 3,731,098 to 3,731,808 _16865 AO353_16870: AO353_16870 - acetyltransferase, at 3,731,892 to 3,732,365 _16870 AO353_16875: AO353_16875 - ribosomal protein S12 methylthiotransferase RimO, at 3,732,481 to 3,733,815 _16875 Position (kb) 3731 3732 3733Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3730.912 kb on + strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.912 kb on + strand, within AO353_16860at 3730.913 kb on - strand, within AO353_16860at 3730.913 kb on - strand, within AO353_16860at 3730.913 kb on - strand, within AO353_16860at 3730.913 kb on - strand, within AO353_16860at 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.996 kb on + strandat 3730.997 kb on - strandat 3731.013 kb on + strandat 3731.013 kb on + strandat 3731.013 kb on + strandat 3731.014 kb on - strandat 3731.014 kb on - strandat 3731.014 kb on - strandat 3731.014 kb on - strandat 3731.099 kb on + strandat 3731.100 kb on - strandat 3731.100 kb on - strandat 3731.123 kb on + strandat 3731.315 kb on + strand, within AO353_16865at 3731.315 kb on + strand, within AO353_16865at 3731.316 kb on - strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.381 kb on + strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.382 kb on - strand, within AO353_16865at 3731.635 kb on - strand, within AO353_16865at 3731.843 kb on + strandat 3731.843 kb on + strandat 3731.843 kb on + strandat 3731.843 kb on + strandat 3731.843 kb on + strandat 3731.843 kb on + strandat 3731.843 kb on + strandat 3731.843 kb on + strandat 3731.844 kb on - strandat 3731.844 kb on - strandat 3731.844 kb on - strandat 3731.844 kb on - strandat 3731.844 kb on - strandat 3731.844 kb on - strandat 3731.844 kb on - strandat 3731.844 kb on - strandat 3731.894 kb on - strandat 3732.076 kb on + strand, within AO353_16870at 3732.076 kb on + strand, within AO353_16870at 3732.076 kb on + strand, within AO353_16870at 3732.076 kb on + strand, within AO353_16870at 3732.076 kb on + strand, within AO353_16870at 3732.076 kb on + strand, within AO353_16870at 3732.076 kb on + strand, within AO353_16870at 3732.077 kb on - strand, within AO353_16870at 3732.077 kb on - strand, within AO353_16870at 3732.077 kb on - strand, within AO353_16870at 3732.246 kb on + strand, within AO353_16870at 3732.247 kb on - strand, within AO353_16870at 3732.247 kb on - strand, within AO353_16870at 3732.256 kb on + strand, within AO353_16870at 3732.256 kb on + strand, within AO353_16870at 3732.256 kb on + strand, within AO353_16870at 3732.256 kb on + strand, within AO353_16870at 3732.257 kb on - strand, within AO353_16870at 3732.257 kb on - strand, within AO353_16870at 3732.257 kb on - strand, within AO353_16870at 3732.257 kb on - strand, within AO353_16870at 3732.322 kb on + strandat 3732.322 kb on + strandat 3732.323 kb on - strandat 3732.323 kb on - strandat 3732.417 kb on + strandat 3732.417 kb on + strandat 3732.417 kb on + strandat 3732.418 kb on - strandat 3732.418 kb on - strandat 3732.418 kb on - strandat 3732.418 kb on - strandat 3732.418 kb on - strandat 3732.422 kb on + strandat 3732.423 kb on - strandat 3732.423 kb on - strandat 3732.428 kb on + strandat 3732.428 kb on + strandat 3732.429 kb on - strandat 3732.429 kb on - strandat 3732.429 kb on - strandat 3732.469 kb on + strandat 3732.482 kb on + strandat 3732.483 kb on - strandat 3732.483 kb on - strandat 3732.483 kb on - strandat 3732.506 kb on + strandat 3732.506 kb on + strandat 3732.506 kb on + strandat 3732.507 kb on - strandat 3732.507 kb on - strandat 3732.577 kb on + strandat 3732.577 kb on + strandat 3732.577 kb on + strandat 3732.577 kb on + strandat 3732.577 kb on + strandat 3732.577 kb on + strandat 3732.577 kb on + strandat 3732.577 kb on + strandat 3732.578 kb on - strandat 3732.578 kb on - strandat 3732.803 kb on + strand, within AO353_16875at 3732.804 kb on - strand, within AO353_16875at 3732.857 kb on + strand, within AO353_16875at 3732.857 kb on + strand, within AO353_16875at 3732.858 kb on - strand, within AO353_16875at 3732.858 kb on - strand, within AO353_16875at 3733.095 kb on - strand, within AO353_16875at 3733.100 kb on + strand, within AO353_16875at 3733.100 kb on + strand, within AO353_16875at 3733.100 kb on + strand, within AO353_16875at 3733.101 kb on - strand, within AO353_16875at 3733.101 kb on - strand, within AO353_16875at 3733.101 kb on - strand, within AO353_16875at 3733.101 kb on - strand, within AO353_16875at 3733.101 kb on - strand, within AO353_16875at 3733.196 kb on + strand, within AO353_16875at 3733.196 kb on + strand, within AO353_16875at 3733.197 kb on - strand, within AO353_16875

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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3,730,912 + AO353_16860 0.75 -0.8
3,730,912 + AO353_16860 0.75 -0.0
3,730,912 + AO353_16860 0.75 +0.5
3,730,912 + AO353_16860 0.75 -0.1
3,730,912 + AO353_16860 0.75 +0.8
3,730,913 - AO353_16860 0.75 -0.4
3,730,913 - AO353_16860 0.75 +0.9
3,730,913 - AO353_16860 0.75 -0.5
3,730,913 - AO353_16860 0.75 -0.3
3,730,996 + -0.3
3,730,996 + +0.5
3,730,996 + +0.2
3,730,996 + +0.5
3,730,996 + -2.0
3,730,996 + +0.5
3,730,996 + +2.2
3,730,997 - +1.5
3,731,013 + +0.6
3,731,013 + +0.5
3,731,013 + -1.3
3,731,014 - -0.0
3,731,014 - -0.8
3,731,014 - -0.8
3,731,014 - -2.1
3,731,099 + -1.8
3,731,100 - -0.7
3,731,100 - +0.9
3,731,123 + +0.9
3,731,315 + AO353_16865 0.31 -0.5
3,731,315 + AO353_16865 0.31 -0.1
3,731,316 - AO353_16865 0.31 -0.3
3,731,381 + AO353_16865 0.40 -0.3
3,731,381 + AO353_16865 0.40 -0.3
3,731,381 + AO353_16865 0.40 +0.7
3,731,381 + AO353_16865 0.40 -0.7
3,731,381 + AO353_16865 0.40 +0.5
3,731,381 + AO353_16865 0.40 +0.3
3,731,381 + AO353_16865 0.40 +0.3
3,731,381 + AO353_16865 0.40 +0.5
3,731,381 + AO353_16865 0.40 +0.9
3,731,381 + AO353_16865 0.40 -0.0
3,731,381 + AO353_16865 0.40 -0.4
3,731,381 + AO353_16865 0.40 +0.3
3,731,381 + AO353_16865 0.40 -0.8
3,731,381 + AO353_16865 0.40 +1.0
3,731,381 + AO353_16865 0.40 +0.3
3,731,381 + AO353_16865 0.40 +0.0
3,731,381 + AO353_16865 0.40 -0.7
3,731,382 - AO353_16865 0.40 -1.6
3,731,382 - AO353_16865 0.40 -0.3
3,731,382 - AO353_16865 0.40 +0.8
3,731,382 - AO353_16865 0.40 +0.1
3,731,382 - AO353_16865 0.40 +0.9
3,731,382 - AO353_16865 0.40 -2.0
3,731,382 - AO353_16865 0.40 -0.2
3,731,382 - AO353_16865 0.40 -0.8
3,731,382 - AO353_16865 0.40 -1.1
3,731,382 - AO353_16865 0.40 -2.1
3,731,382 - AO353_16865 0.40 +0.0
3,731,635 - AO353_16865 0.76 +2.2
3,731,843 + +1.2
3,731,843 + -1.1
3,731,843 + +1.5
3,731,843 + -0.1
3,731,843 + -1.7
3,731,843 + +0.6
3,731,843 + +0.3
3,731,843 + +0.0
3,731,844 - +0.5
3,731,844 - -0.4
3,731,844 - -0.3
3,731,844 - -0.1
3,731,844 - -0.5
3,731,844 - +1.1
3,731,844 - -1.6
3,731,844 - +0.2
3,731,894 - -0.3
3,732,076 + AO353_16870 0.39 +0.2
3,732,076 + AO353_16870 0.39 +0.2
3,732,076 + AO353_16870 0.39 +1.9
3,732,076 + AO353_16870 0.39 +1.8
3,732,076 + AO353_16870 0.39 +0.3
3,732,076 + AO353_16870 0.39 +1.5
3,732,076 + AO353_16870 0.39 -0.5
3,732,077 - AO353_16870 0.39 -0.7
3,732,077 - AO353_16870 0.39 +0.1
3,732,077 - AO353_16870 0.39 +1.4
3,732,246 + AO353_16870 0.75 +1.3
3,732,247 - AO353_16870 0.75 +0.8
3,732,247 - AO353_16870 0.75 +0.6
3,732,256 + AO353_16870 0.77 +1.5
3,732,256 + AO353_16870 0.77 +0.1
3,732,256 + AO353_16870 0.77 +2.0
3,732,256 + AO353_16870 0.77 +3.5
3,732,257 - AO353_16870 0.77 -0.7
3,732,257 - AO353_16870 0.77 -1.5
3,732,257 - AO353_16870 0.77 -0.7
3,732,257 - AO353_16870 0.77 +0.3
3,732,322 + +0.3
3,732,322 + +1.2
3,732,323 - -0.6
3,732,323 - -0.6
3,732,417 + +0.8
3,732,417 + -0.6
3,732,417 + +2.1
3,732,418 - +1.9
3,732,418 - +1.5
3,732,418 - +0.5
3,732,418 - +0.8
3,732,418 - -0.2
3,732,422 + +0.9
3,732,423 - -0.5
3,732,423 - -1.3
3,732,428 + +0.0
3,732,428 + +0.5
3,732,429 - -0.9
3,732,429 - +0.2
3,732,429 - +0.9
3,732,469 + +0.2
3,732,482 + -0.3
3,732,483 - +0.7
3,732,483 - -1.3
3,732,483 - -0.3
3,732,506 + -1.1
3,732,506 + -1.7
3,732,506 + -0.3
3,732,507 - -0.5
3,732,507 - -0.1
3,732,577 + +0.4
3,732,577 + -0.5
3,732,577 + -0.8
3,732,577 + -2.2
3,732,577 + -0.8
3,732,577 + +0.7
3,732,577 + -1.6
3,732,577 + +0.0
3,732,578 - -0.3
3,732,578 - +0.6
3,732,803 + AO353_16875 0.24 +1.1
3,732,804 - AO353_16875 0.24 +0.2
3,732,857 + AO353_16875 0.28 -0.4
3,732,857 + AO353_16875 0.28 +0.2
3,732,858 - AO353_16875 0.28 -0.2
3,732,858 - AO353_16875 0.28 -0.5
3,733,095 - AO353_16875 0.46 -1.3
3,733,100 + AO353_16875 0.46 -0.2
3,733,100 + AO353_16875 0.46 -0.4
3,733,100 + AO353_16875 0.46 -0.2
3,733,101 - AO353_16875 0.46 +0.2
3,733,101 - AO353_16875 0.46 -1.0
3,733,101 - AO353_16875 0.46 -0.8
3,733,101 - AO353_16875 0.46 -0.2
3,733,101 - AO353_16875 0.46 -0.4
3,733,196 + AO353_16875 0.54 -1.3
3,733,196 + AO353_16875 0.54 -0.8
3,733,197 - AO353_16875 0.54 -2.8

Or see this region's nucleotide sequence