Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16425

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16420 and AO353_16425 are separated by 125 nucleotidesAO353_16425 and AO353_16430 overlap by 4 nucleotides AO353_16420: AO353_16420 - thiamine biosynthesis protein ThiF, at 3,646,279 to 3,647,097 _16420 AO353_16425: AO353_16425 - Fe-S metabolism protein SufE, at 3,647,223 to 3,647,627 _16425 AO353_16430: AO353_16430 - cysteine sulfinate desulfinase, at 3,647,624 to 3,648,829 _16430 Position (kb) 3647 3648Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3646.253 kb on + strandat 3646.253 kb on + strandat 3646.253 kb on + strandat 3646.253 kb on + strandat 3646.254 kb on - strandat 3646.254 kb on - strandat 3646.254 kb on - strandat 3646.254 kb on - strandat 3646.255 kb on + strandat 3646.255 kb on + strandat 3646.255 kb on + strandat 3646.255 kb on + strandat 3646.256 kb on - strandat 3646.272 kb on + strandat 3646.290 kb on + strandat 3646.290 kb on + strandat 3646.291 kb on - strandat 3646.291 kb on - strandat 3646.327 kb on + strandat 3646.327 kb on + strandat 3646.327 kb on + strandat 3646.327 kb on + strandat 3646.327 kb on + strandat 3646.328 kb on - strandat 3646.328 kb on - strandat 3646.328 kb on - strandat 3646.328 kb on - strandat 3646.328 kb on - strandat 3646.328 kb on - strandat 3646.506 kb on + strand, within AO353_16420at 3646.506 kb on + strand, within AO353_16420at 3646.506 kb on + strandat 3646.507 kb on - strand, within AO353_16420at 3646.507 kb on - strand, within AO353_16420at 3646.507 kb on - strand, within AO353_16420at 3646.507 kb on - strand, within AO353_16420at 3646.618 kb on + strand, within AO353_16420at 3646.618 kb on + strand, within AO353_16420at 3646.618 kb on + strand, within AO353_16420at 3646.618 kb on + strand, within AO353_16420at 3646.618 kb on + strand, within AO353_16420at 3646.619 kb on - strand, within AO353_16420at 3646.632 kb on + strand, within AO353_16420at 3646.633 kb on - strand, within AO353_16420at 3646.719 kb on + strand, within AO353_16420at 3646.720 kb on - strand, within AO353_16420at 3646.783 kb on - strand, within AO353_16420at 3646.783 kb on - strand, within AO353_16420at 3646.834 kb on + strand, within AO353_16420at 3646.864 kb on + strand, within AO353_16420at 3646.864 kb on + strand, within AO353_16420at 3646.864 kb on + strand, within AO353_16420at 3646.864 kb on + strand, within AO353_16420at 3646.865 kb on - strand, within AO353_16420at 3646.865 kb on - strand, within AO353_16420at 3646.865 kb on - strand, within AO353_16420at 3646.865 kb on - strand, within AO353_16420at 3647.043 kb on + strandat 3647.052 kb on - strandat 3647.119 kb on + strandat 3647.120 kb on - strandat 3647.201 kb on + strandat 3647.202 kb on - strandat 3647.485 kb on - strand, within AO353_16425at 3647.485 kb on - strand, within AO353_16425at 3647.485 kb on - strand, within AO353_16425at 3647.603 kb on + strandat 3647.691 kb on + strandat 3647.691 kb on + strandat 3647.691 kb on + strandat 3647.691 kb on + strandat 3647.692 kb on - strandat 3647.692 kb on - strandat 3647.692 kb on - strandat 3647.907 kb on + strand, within AO353_16430at 3647.907 kb on + strand, within AO353_16430at 3647.907 kb on + strand, within AO353_16430at 3647.907 kb on + strand, within AO353_16430at 3647.908 kb on - strand, within AO353_16430at 3647.908 kb on - strand, within AO353_16430at 3647.964 kb on + strand, within AO353_16430at 3647.964 kb on + strand, within AO353_16430at 3647.965 kb on - strand, within AO353_16430at 3648.057 kb on + strand, within AO353_16430at 3648.057 kb on + strand, within AO353_16430at 3648.058 kb on - strand, within AO353_16430at 3648.058 kb on - strand, within AO353_16430at 3648.058 kb on - strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.129 kb on + strand, within AO353_16430at 3648.130 kb on - strand, within AO353_16430at 3648.130 kb on - strand, within AO353_16430at 3648.130 kb on - strand, within AO353_16430at 3648.130 kb on - strand, within AO353_16430at 3648.156 kb on + strand, within AO353_16430at 3648.157 kb on - strand, within AO353_16430at 3648.157 kb on - strand, within AO353_16430at 3648.180 kb on + strand, within AO353_16430at 3648.181 kb on - strand, within AO353_16430at 3648.528 kb on + strand, within AO353_16430at 3648.528 kb on + strand, within AO353_16430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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3,646,253 + -2.3
3,646,253 + -1.0
3,646,253 + -0.5
3,646,253 + +0.1
3,646,254 - -0.2
3,646,254 - +0.1
3,646,254 - -0.1
3,646,254 - +1.4
3,646,255 + -0.7
3,646,255 + +0.4
3,646,255 + +0.0
3,646,255 + -1.4
3,646,256 - +0.2
3,646,272 + -0.2
3,646,290 + +0.7
3,646,290 + +1.5
3,646,291 - -0.1
3,646,291 - +1.2
3,646,327 + +0.5
3,646,327 + +0.9
3,646,327 + +0.9
3,646,327 + +0.5
3,646,327 + -1.3
3,646,328 - +0.2
3,646,328 - -0.3
3,646,328 - -0.1
3,646,328 - -1.1
3,646,328 - -0.6
3,646,328 - -0.2
3,646,506 + AO353_16420 0.28 +0.1
3,646,506 + AO353_16420 0.28 -0.9
3,646,506 + -0.1
3,646,507 - AO353_16420 0.28 +0.4
3,646,507 - AO353_16420 0.28 -0.6
3,646,507 - AO353_16420 0.28 +0.2
3,646,507 - AO353_16420 0.28 +0.1
3,646,618 + AO353_16420 0.41 -2.9
3,646,618 + AO353_16420 0.41 -1.6
3,646,618 + AO353_16420 0.41 -1.1
3,646,618 + AO353_16420 0.41 +1.8
3,646,618 + AO353_16420 0.41 -0.6
3,646,619 - AO353_16420 0.42 +0.3
3,646,632 + AO353_16420 0.43 +0.5
3,646,633 - AO353_16420 0.43 +0.4
3,646,719 + AO353_16420 0.54 +1.9
3,646,720 - AO353_16420 0.54 -0.1
3,646,783 - AO353_16420 0.62 +1.9
3,646,783 - AO353_16420 0.62 -0.8
3,646,834 + AO353_16420 0.68 -0.5
3,646,864 + AO353_16420 0.71 -0.7
3,646,864 + AO353_16420 0.71 +1.5
3,646,864 + AO353_16420 0.71 +0.1
3,646,864 + AO353_16420 0.71 +0.4
3,646,865 - AO353_16420 0.72 -1.4
3,646,865 - AO353_16420 0.72 +0.6
3,646,865 - AO353_16420 0.72 -0.3
3,646,865 - AO353_16420 0.72 -1.5
3,647,043 + +0.3
3,647,052 - +0.5
3,647,119 + -0.8
3,647,120 - +0.5
3,647,201 + -1.8
3,647,202 - +1.2
3,647,485 - AO353_16425 0.65 -1.1
3,647,485 - AO353_16425 0.65 -2.4
3,647,485 - AO353_16425 0.65 -0.8
3,647,603 + -1.1
3,647,691 + +0.3
3,647,691 + +0.3
3,647,691 + +0.8
3,647,691 + -1.3
3,647,692 - +1.1
3,647,692 - -0.9
3,647,692 - -0.8
3,647,907 + AO353_16430 0.23 -0.0
3,647,907 + AO353_16430 0.23 +0.3
3,647,907 + AO353_16430 0.23 +1.1
3,647,907 + AO353_16430 0.23 +0.4
3,647,908 - AO353_16430 0.24 -2.1
3,647,908 - AO353_16430 0.24 -0.2
3,647,964 + AO353_16430 0.28 -0.7
3,647,964 + AO353_16430 0.28 -0.5
3,647,965 - AO353_16430 0.28 -1.0
3,648,057 + AO353_16430 0.36 -0.6
3,648,057 + AO353_16430 0.36 -0.9
3,648,058 - AO353_16430 0.36 -0.5
3,648,058 - AO353_16430 0.36 +0.6
3,648,058 - AO353_16430 0.36 -0.5
3,648,129 + AO353_16430 0.42 +0.8
3,648,129 + AO353_16430 0.42 +0.9
3,648,129 + AO353_16430 0.42 +1.8
3,648,129 + AO353_16430 0.42 -0.1
3,648,129 + AO353_16430 0.42 +0.5
3,648,130 - AO353_16430 0.42 -0.6
3,648,130 - AO353_16430 0.42 +0.4
3,648,130 - AO353_16430 0.42 +0.5
3,648,130 - AO353_16430 0.42 -0.3
3,648,156 + AO353_16430 0.44 +1.8
3,648,157 - AO353_16430 0.44 -0.8
3,648,157 - AO353_16430 0.44 -0.6
3,648,180 + AO353_16430 0.46 -0.1
3,648,181 - AO353_16430 0.46 -0.2
3,648,528 + AO353_16430 0.75 -0.5
3,648,528 + AO353_16430 0.75 -0.2

Or see this region's nucleotide sequence