Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15280

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15270 and AO353_15275 overlap by 4 nucleotidesAO353_15275 and AO353_15280 are separated by 134 nucleotidesAO353_15280 and AO353_15285 are separated by 11 nucleotides AO353_15270: AO353_15270 - phospholipid-binding protein, at 3,373,838 to 3,374,416 _15270 AO353_15275: AO353_15275 - phosphoheptose isomerase, at 3,374,413 to 3,375,006 _15275 AO353_15280: AO353_15280 - hypothetical protein, at 3,375,141 to 3,375,458 _15280 AO353_15285: AO353_15285 - hypothetical protein, at 3,375,470 to 3,377,281 _15285 Position (kb) 3375 3376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3374.219 kb on - strand, within AO353_15270at 3374.378 kb on + strandat 3374.378 kb on + strandat 3374.379 kb on - strandat 3374.379 kb on - strandat 3374.379 kb on - strandat 3374.379 kb on - strandat 3374.379 kb on - strandat 3374.813 kb on - strand, within AO353_15275at 3374.874 kb on + strand, within AO353_15275at 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.019 kb on - strandat 3375.023 kb on - strandat 3375.023 kb on - strandat 3375.023 kb on - strandat 3375.023 kb on - strandat 3375.023 kb on - strandat 3375.160 kb on - strandat 3375.160 kb on - strandat 3375.221 kb on - strand, within AO353_15280at 3375.221 kb on - strand, within AO353_15280at 3375.319 kb on - strand, within AO353_15280at 3375.319 kb on - strand, within AO353_15280at 3375.319 kb on - strand, within AO353_15280at 3375.319 kb on - strand, within AO353_15280at 3375.319 kb on - strand, within AO353_15280at 3375.321 kb on + strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.322 kb on - strand, within AO353_15280at 3375.327 kb on - strand, within AO353_15280at 3375.365 kb on + strand, within AO353_15280at 3375.366 kb on - strand, within AO353_15280at 3375.481 kb on + strandat 3375.482 kb on - strandat 3375.482 kb on - strandat 3375.657 kb on + strand, within AO353_15285at 3375.778 kb on - strand, within AO353_15285at 3375.778 kb on - strand, within AO353_15285at 3375.806 kb on + strand, within AO353_15285at 3375.806 kb on + strand, within AO353_15285at 3375.806 kb on + strand, within AO353_15285at 3375.806 kb on + strand, within AO353_15285at 3375.807 kb on - strand, within AO353_15285at 3375.807 kb on - strand, within AO353_15285at 3375.807 kb on - strand, within AO353_15285at 3375.807 kb on - strand, within AO353_15285at 3375.807 kb on - strand, within AO353_15285at 3375.822 kb on + strand, within AO353_15285at 3375.823 kb on - strand, within AO353_15285at 3375.953 kb on + strand, within AO353_15285at 3375.953 kb on + strand, within AO353_15285at 3375.954 kb on - strand, within AO353_15285at 3376.254 kb on + strand, within AO353_15285at 3376.254 kb on + strand, within AO353_15285at 3376.254 kb on + strand, within AO353_15285at 3376.254 kb on + strand, within AO353_15285at 3376.255 kb on - strand, within AO353_15285at 3376.369 kb on - strand, within AO353_15285at 3376.404 kb on + strand, within AO353_15285at 3376.404 kb on + strand, within AO353_15285at 3376.404 kb on + strand, within AO353_15285at 3376.404 kb on + strand, within AO353_15285at 3376.404 kb on + strand, within AO353_15285at 3376.405 kb on - strand, within AO353_15285at 3376.405 kb on - strand, within AO353_15285at 3376.405 kb on - strand, within AO353_15285at 3376.405 kb on - strand, within AO353_15285at 3376.405 kb on - strand, within AO353_15285at 3376.449 kb on + strand, within AO353_15285at 3376.449 kb on + strand, within AO353_15285at 3376.450 kb on - strand, within AO353_15285

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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3,374,219 - AO353_15270 0.66 +1.1
3,374,378 + +0.8
3,374,378 + -0.4
3,374,379 - +0.3
3,374,379 - +1.6
3,374,379 - -2.0
3,374,379 - -0.4
3,374,379 - -0.8
3,374,813 - AO353_15275 0.67 +0.4
3,374,874 + AO353_15275 0.78 +0.8
3,375,019 - +0.6
3,375,019 - +0.3
3,375,019 - +1.3
3,375,019 - -0.0
3,375,019 - +0.4
3,375,019 - -0.4
3,375,019 - +1.6
3,375,019 - +0.0
3,375,019 - +0.4
3,375,019 - -0.5
3,375,019 - -1.2
3,375,019 - +0.2
3,375,019 - +0.8
3,375,023 - +0.6
3,375,023 - +0.6
3,375,023 - +0.2
3,375,023 - +0.4
3,375,023 - -0.7
3,375,160 - -0.0
3,375,160 - +0.3
3,375,221 - AO353_15280 0.25 -0.0
3,375,221 - AO353_15280 0.25 +0.0
3,375,319 - AO353_15280 0.56 -1.0
3,375,319 - AO353_15280 0.56 +0.8
3,375,319 - AO353_15280 0.56 +1.2
3,375,319 - AO353_15280 0.56 -0.3
3,375,319 - AO353_15280 0.56 -0.4
3,375,321 + AO353_15280 0.57 +1.2
3,375,322 - AO353_15280 0.57 +1.6
3,375,322 - AO353_15280 0.57 -0.0
3,375,322 - AO353_15280 0.57 +0.3
3,375,322 - AO353_15280 0.57 +1.4
3,375,322 - AO353_15280 0.57 -1.0
3,375,322 - AO353_15280 0.57 -0.5
3,375,322 - AO353_15280 0.57 +0.6
3,375,322 - AO353_15280 0.57 +2.1
3,375,322 - AO353_15280 0.57 +1.2
3,375,327 - AO353_15280 0.58 +0.2
3,375,365 + AO353_15280 0.70 +0.9
3,375,366 - AO353_15280 0.71 +1.6
3,375,481 + -0.0
3,375,482 - -0.1
3,375,482 - -0.2
3,375,657 + AO353_15285 0.10 -2.4
3,375,778 - AO353_15285 0.17 +0.2
3,375,778 - AO353_15285 0.17 +0.8
3,375,806 + AO353_15285 0.19 -0.1
3,375,806 + AO353_15285 0.19 +0.2
3,375,806 + AO353_15285 0.19 -2.8
3,375,806 + AO353_15285 0.19 +0.4
3,375,807 - AO353_15285 0.19 +0.8
3,375,807 - AO353_15285 0.19 +0.8
3,375,807 - AO353_15285 0.19 -0.2
3,375,807 - AO353_15285 0.19 -0.7
3,375,807 - AO353_15285 0.19 -0.2
3,375,822 + AO353_15285 0.19 +0.1
3,375,823 - AO353_15285 0.19 -0.0
3,375,953 + AO353_15285 0.27 -1.8
3,375,953 + AO353_15285 0.27 -0.0
3,375,954 - AO353_15285 0.27 +3.6
3,376,254 + AO353_15285 0.43 -0.1
3,376,254 + AO353_15285 0.43 +0.4
3,376,254 + AO353_15285 0.43 -0.7
3,376,254 + AO353_15285 0.43 -0.4
3,376,255 - AO353_15285 0.43 -1.2
3,376,369 - AO353_15285 0.50 +1.9
3,376,404 + AO353_15285 0.52 -0.4
3,376,404 + AO353_15285 0.52 +0.2
3,376,404 + AO353_15285 0.52 -0.4
3,376,404 + AO353_15285 0.52 -0.0
3,376,404 + AO353_15285 0.52 -0.3
3,376,405 - AO353_15285 0.52 -0.2
3,376,405 - AO353_15285 0.52 +0.8
3,376,405 - AO353_15285 0.52 +0.2
3,376,405 - AO353_15285 0.52 +0.1
3,376,405 - AO353_15285 0.52 +0.7
3,376,449 + AO353_15285 0.54 +0.4
3,376,449 + AO353_15285 0.54 -0.5
3,376,450 - AO353_15285 0.54 -0.8

Or see this region's nucleotide sequence