Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14935

Experiment: L-Arginine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_14925 and AO353_14930 are separated by 106 nucleotidesAO353_14930 and AO353_14935 are separated by 178 nucleotidesAO353_14935 and AO353_14940 are separated by 69 nucleotides AO353_14925: AO353_14925 - hydroxyproline-2-epimerase, at 3,300,760 to 3,301,695 _14925 AO353_14930: AO353_14930 - GntR family transcriptional regulator, at 3,301,802 to 3,302,482 _14930 AO353_14935: AO353_14935 - aminopeptidase, at 3,302,661 to 3,302,948 _14935 AO353_14940: AO353_14940 - malate:quinone oxidoreductase, at 3,303,018 to 3,304,526 _14940 Position (kb) 3302 3303Strain fitness (log2 ratio) -3 -2 -1 0 1at 3301.686 kb on + strandat 3301.686 kb on + strandat 3301.686 kb on + strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.687 kb on - strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.727 kb on + strandat 3301.728 kb on - strandat 3301.728 kb on - strandat 3301.728 kb on - strandat 3301.768 kb on + strandat 3301.768 kb on + strandat 3301.769 kb on - strandat 3301.836 kb on + strandat 3301.836 kb on + strandat 3301.837 kb on - strandat 3301.837 kb on - strandat 3301.837 kb on - strandat 3301.983 kb on + strand, within AO353_14930at 3301.984 kb on - strand, within AO353_14930at 3301.984 kb on - strand, within AO353_14930at 3302.049 kb on + strand, within AO353_14930at 3302.049 kb on + strand, within AO353_14930at 3302.049 kb on + strand, within AO353_14930at 3302.049 kb on + strand, within AO353_14930at 3302.050 kb on - strand, within AO353_14930at 3302.515 kb on - strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.519 kb on + strandat 3302.520 kb on - strandat 3302.520 kb on - strandat 3302.520 kb on - strandat 3302.521 kb on + strandat 3302.666 kb on + strandat 3302.666 kb on + strandat 3302.666 kb on + strandat 3302.666 kb on + strandat 3302.666 kb on + strandat 3302.667 kb on - strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.672 kb on + strandat 3302.673 kb on - strandat 3302.903 kb on + strand, within AO353_14935at 3302.903 kb on + strand, within AO353_14935at 3302.904 kb on - strand, within AO353_14935at 3302.904 kb on - strand, within AO353_14935at 3302.904 kb on - strand, within AO353_14935at 3302.904 kb on - strand, within AO353_14935at 3302.904 kb on - strand, within AO353_14935at 3302.904 kb on - strand, within AO353_14935at 3302.916 kb on + strand, within AO353_14935at 3302.917 kb on - strand, within AO353_14935at 3302.917 kb on - strand, within AO353_14935at 3302.947 kb on - strandat 3303.006 kb on + strandat 3303.391 kb on + strand, within AO353_14940at 3303.391 kb on + strand, within AO353_14940at 3303.391 kb on + strand, within AO353_14940at 3303.392 kb on - strand, within AO353_14940at 3303.392 kb on - strand, within AO353_14940at 3303.451 kb on + strand, within AO353_14940at 3303.668 kb on - strand, within AO353_14940at 3303.916 kb on + strand, within AO353_14940at 3303.917 kb on - strand, within AO353_14940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
remove
3,301,686 + -0.1
3,301,686 + +0.0
3,301,686 + -0.4
3,301,687 - +0.2
3,301,687 - +0.6
3,301,687 - +0.2
3,301,687 - +0.3
3,301,687 - +0.4
3,301,727 + -1.3
3,301,727 + -2.1
3,301,727 + -1.1
3,301,727 + -2.9
3,301,727 + -0.6
3,301,728 - -0.4
3,301,728 - -0.4
3,301,728 - +0.3
3,301,768 + +0.1
3,301,768 + -1.0
3,301,769 - +0.0
3,301,836 + +0.3
3,301,836 + +1.3
3,301,837 - -1.2
3,301,837 - -0.7
3,301,837 - +0.6
3,301,983 + AO353_14930 0.27 -0.1
3,301,984 - AO353_14930 0.27 -1.2
3,301,984 - AO353_14930 0.27 -0.2
3,302,049 + AO353_14930 0.36 -0.5
3,302,049 + AO353_14930 0.36 -1.4
3,302,049 + AO353_14930 0.36 +0.0
3,302,049 + AO353_14930 0.36 -0.2
3,302,050 - AO353_14930 0.36 +0.0
3,302,515 - +1.0
3,302,519 + -0.2
3,302,519 + -0.2
3,302,519 + +1.3
3,302,519 + +0.3
3,302,519 + +0.1
3,302,519 + -1.7
3,302,519 + -0.7
3,302,519 + +1.1
3,302,519 + -0.1
3,302,520 - -0.8
3,302,520 - +0.1
3,302,520 - +0.9
3,302,521 + -0.1
3,302,666 + -1.0
3,302,666 + -2.2
3,302,666 + +0.3
3,302,666 + -0.4
3,302,666 + +0.3
3,302,667 - +1.6
3,302,672 + -1.0
3,302,672 + +0.0
3,302,672 + -0.5
3,302,672 + +0.1
3,302,672 + -1.1
3,302,672 + +1.0
3,302,672 + -0.6
3,302,672 + -0.4
3,302,673 - -0.6
3,302,903 + AO353_14935 0.84 -1.0
3,302,903 + AO353_14935 0.84 -2.0
3,302,904 - AO353_14935 0.84 -0.2
3,302,904 - AO353_14935 0.84 +0.6
3,302,904 - AO353_14935 0.84 +0.0
3,302,904 - AO353_14935 0.84 -0.3
3,302,904 - AO353_14935 0.84 -1.8
3,302,904 - AO353_14935 0.84 +0.6
3,302,916 + AO353_14935 0.89 -1.7
3,302,917 - AO353_14935 0.89 +0.2
3,302,917 - AO353_14935 0.89 +1.0
3,302,947 - +1.3
3,303,006 + -0.3
3,303,391 + AO353_14940 0.25 -1.2
3,303,391 + AO353_14940 0.25 -0.1
3,303,391 + AO353_14940 0.25 -0.9
3,303,392 - AO353_14940 0.25 -1.3
3,303,392 - AO353_14940 0.25 +0.8
3,303,451 + AO353_14940 0.29 -0.4
3,303,668 - AO353_14940 0.43 +0.2
3,303,916 + AO353_14940 0.60 -1.0
3,303,917 - AO353_14940 0.60 +0.2

Or see this region's nucleotide sequence