Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14085

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14075 and AO353_14080 are separated by 127 nucleotidesAO353_14080 and AO353_14085 are separated by 128 nucleotidesAO353_14085 and AO353_14090 are separated by 205 nucleotidesAO353_14090 and AO353_14095 are separated by 194 nucleotides AO353_14075: AO353_14075 - cation transporter, at 3,130,337 to 3,130,630 _14075 AO353_14080: AO353_14080 - peptidylprolyl isomerase, at 3,130,758 to 3,131,375 _14080 AO353_14085: AO353_14085 - hypothetical protein, at 3,131,504 to 3,131,761 _14085 AO353_14090: AO353_14090 - alkylphosphonate utilization protein, at 3,131,967 to 3,132,308 _14090 AO353_14095: AO353_14095 - octaprenyl-diphosphate synthase, at 3,132,503 to 3,133,471 _14095 Position (kb) 3131 3132Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3130.667 kb on + strandat 3130.667 kb on + strandat 3130.667 kb on + strandat 3130.668 kb on - strandat 3130.668 kb on - strandat 3130.768 kb on + strandat 3130.768 kb on + strandat 3130.768 kb on + strandat 3130.768 kb on + strandat 3130.768 kb on + strandat 3130.768 kb on + strandat 3130.769 kb on - strandat 3130.769 kb on - strandat 3130.801 kb on - strandat 3131.080 kb on + strand, within AO353_14080at 3131.081 kb on - strand, within AO353_14080at 3131.081 kb on - strand, within AO353_14080at 3131.081 kb on - strand, within AO353_14080at 3131.081 kb on - strand, within AO353_14080at 3131.129 kb on + strand, within AO353_14080at 3131.137 kb on - strand, within AO353_14080at 3131.137 kb on - strand, within AO353_14080at 3131.137 kb on - strand, within AO353_14080at 3131.178 kb on + strand, within AO353_14080at 3131.179 kb on - strand, within AO353_14080at 3131.179 kb on - strand, within AO353_14080at 3131.179 kb on - strand, within AO353_14080at 3131.179 kb on - strand, within AO353_14080at 3131.179 kb on - strand, within AO353_14080at 3131.179 kb on - strand, within AO353_14080at 3131.218 kb on + strand, within AO353_14080at 3131.277 kb on + strand, within AO353_14080at 3131.277 kb on + strand, within AO353_14080at 3131.277 kb on + strand, within AO353_14080at 3131.277 kb on + strand, within AO353_14080at 3131.277 kb on + strand, within AO353_14080at 3131.277 kb on + strand, within AO353_14080at 3131.277 kb on + strand, within AO353_14080at 3131.278 kb on - strand, within AO353_14080at 3131.278 kb on - strand, within AO353_14080at 3131.278 kb on - strand, within AO353_14080at 3131.278 kb on - strand, within AO353_14080at 3131.298 kb on + strand, within AO353_14080at 3131.373 kb on + strandat 3131.373 kb on + strandat 3131.373 kb on + strandat 3131.373 kb on + strandat 3131.374 kb on - strandat 3131.374 kb on - strandat 3131.374 kb on - strandat 3131.374 kb on - strandat 3131.374 kb on - strandat 3131.389 kb on + strandat 3131.389 kb on + strandat 3131.389 kb on + strandat 3131.389 kb on + strandat 3131.390 kb on - strandat 3131.428 kb on + strandat 3131.429 kb on - strandat 3131.496 kb on + strandat 3131.496 kb on + strandat 3131.496 kb on + strandat 3131.496 kb on + strandat 3131.497 kb on - strandat 3131.497 kb on - strandat 3131.497 kb on - strandat 3131.507 kb on + strandat 3131.507 kb on + strandat 3131.507 kb on + strandat 3131.507 kb on + strandat 3131.507 kb on + strandat 3131.508 kb on - strandat 3131.508 kb on - strandat 3131.557 kb on - strand, within AO353_14085at 3131.564 kb on + strand, within AO353_14085at 3131.564 kb on + strand, within AO353_14085at 3131.564 kb on + strand, within AO353_14085at 3131.565 kb on - strand, within AO353_14085at 3131.565 kb on - strand, within AO353_14085at 3131.718 kb on + strand, within AO353_14085at 3131.718 kb on + strand, within AO353_14085at 3131.718 kb on + strand, within AO353_14085at 3131.719 kb on - strand, within AO353_14085at 3131.719 kb on - strand, within AO353_14085at 3131.719 kb on - strand, within AO353_14085at 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.754 kb on + strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.755 kb on - strandat 3131.779 kb on + strandat 3131.780 kb on - strandat 3131.811 kb on + strandat 3131.815 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.822 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.826 kb on - strandat 3131.850 kb on + strandat 3131.850 kb on + strandat 3131.890 kb on - strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.957 kb on + strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3131.958 kb on - strandat 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.262 kb on + strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strandat 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.263 kb on - strand, within AO353_14090at 3132.268 kb on + strand, within AO353_14090at 3132.268 kb on + strand, within AO353_14090at 3132.268 kb on + strand, within AO353_14090at 3132.269 kb on - strand, within AO353_14090at 3132.269 kb on - strand, within AO353_14090at 3132.309 kb on + strandat 3132.309 kb on + strandat 3132.309 kb on + strandat 3132.310 kb on - strandat 3132.310 kb on - strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.347 kb on + strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.348 kb on - strandat 3132.349 kb on + strandat 3132.349 kb on + strandat 3132.349 kb on + strandat 3132.349 kb on + strandat 3132.350 kb on - strandat 3132.350 kb on - strandat 3132.351 kb on + strandat 3132.352 kb on - strandat 3132.352 kb on - strandat 3132.359 kb on + strandat 3132.428 kb on + strandat 3132.428 kb on + strandat 3132.428 kb on + strandat 3132.428 kb on + strandat 3132.429 kb on - strandat 3132.429 kb on - strandat 3132.429 kb on - strandat 3132.429 kb on - strandat 3132.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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3,130,667 + -0.5
3,130,667 + -0.5
3,130,667 + +0.2
3,130,668 - +0.4
3,130,668 - -0.8
3,130,768 + -0.4
3,130,768 + -1.1
3,130,768 + -1.1
3,130,768 + +0.1
3,130,768 + -0.1
3,130,768 + +0.5
3,130,769 - -0.8
3,130,769 - +0.6
3,130,801 - -0.7
3,131,080 + AO353_14080 0.52 -0.4
3,131,081 - AO353_14080 0.52 +1.2
3,131,081 - AO353_14080 0.52 -0.7
3,131,081 - AO353_14080 0.52 +0.5
3,131,081 - AO353_14080 0.52 -0.0
3,131,129 + AO353_14080 0.60 +0.2
3,131,137 - AO353_14080 0.61 +0.1
3,131,137 - AO353_14080 0.61 -1.1
3,131,137 - AO353_14080 0.61 +1.1
3,131,178 + AO353_14080 0.68 +1.1
3,131,179 - AO353_14080 0.68 -0.2
3,131,179 - AO353_14080 0.68 +0.3
3,131,179 - AO353_14080 0.68 +0.6
3,131,179 - AO353_14080 0.68 +0.4
3,131,179 - AO353_14080 0.68 -0.1
3,131,179 - AO353_14080 0.68 +0.9
3,131,218 + AO353_14080 0.74 -0.7
3,131,277 + AO353_14080 0.84 +0.6
3,131,277 + AO353_14080 0.84 -2.1
3,131,277 + AO353_14080 0.84 +1.8
3,131,277 + AO353_14080 0.84 -1.2
3,131,277 + AO353_14080 0.84 -1.0
3,131,277 + AO353_14080 0.84 -0.4
3,131,277 + AO353_14080 0.84 +0.2
3,131,278 - AO353_14080 0.84 -0.2
3,131,278 - AO353_14080 0.84 +0.6
3,131,278 - AO353_14080 0.84 +0.7
3,131,278 - AO353_14080 0.84 +0.2
3,131,298 + AO353_14080 0.87 -0.2
3,131,373 + +0.8
3,131,373 + -0.6
3,131,373 + +0.1
3,131,373 + +0.1
3,131,374 - +0.3
3,131,374 - -1.2
3,131,374 - -1.9
3,131,374 - -0.4
3,131,374 - +0.2
3,131,389 + -0.7
3,131,389 + +0.1
3,131,389 + +0.1
3,131,389 + -0.9
3,131,390 - -1.8
3,131,428 + +0.4
3,131,429 - -0.2
3,131,496 + +0.6
3,131,496 + +1.6
3,131,496 + -0.0
3,131,496 + +0.6
3,131,497 - -0.5
3,131,497 - -0.1
3,131,497 - -1.0
3,131,507 + +0.1
3,131,507 + +0.6
3,131,507 + -0.0
3,131,507 + +0.3
3,131,507 + -0.2
3,131,508 - -0.5
3,131,508 - -0.9
3,131,557 - AO353_14085 0.21 +0.2
3,131,564 + AO353_14085 0.23 +0.8
3,131,564 + AO353_14085 0.23 -0.9
3,131,564 + AO353_14085 0.23 -0.5
3,131,565 - AO353_14085 0.24 +2.6
3,131,565 - AO353_14085 0.24 -1.2
3,131,718 + AO353_14085 0.83 +0.2
3,131,718 + AO353_14085 0.83 +1.2
3,131,718 + AO353_14085 0.83 +0.9
3,131,719 - AO353_14085 0.83 -0.9
3,131,719 - AO353_14085 0.83 +0.9
3,131,719 - AO353_14085 0.83 +0.7
3,131,754 + +0.3
3,131,754 + -0.7
3,131,754 + +1.1
3,131,754 + +0.3
3,131,754 + -0.6
3,131,754 + +0.2
3,131,754 + -0.4
3,131,754 + +0.6
3,131,754 + +1.1
3,131,754 + -1.2
3,131,754 + +1.8
3,131,754 + +0.8
3,131,754 + -1.2
3,131,754 + -0.7
3,131,754 + -0.5
3,131,754 + +1.2
3,131,754 + -0.9
3,131,754 + +0.6
3,131,754 + +0.5
3,131,755 - -1.3
3,131,755 - +0.2
3,131,755 - +0.6
3,131,755 - -0.2
3,131,755 - -0.5
3,131,755 - +0.5
3,131,755 - +0.5
3,131,755 - +0.2
3,131,755 - -0.6
3,131,755 - -0.1
3,131,755 - +0.1
3,131,755 - +0.4
3,131,755 - +1.1
3,131,755 - +0.4
3,131,779 + +0.4
3,131,780 - -0.7
3,131,811 + -0.7
3,131,815 - -0.3
3,131,822 - +0.4
3,131,822 - +0.9
3,131,822 - +0.6
3,131,822 - +0.5
3,131,822 - +2.5
3,131,822 - +0.2
3,131,822 - +0.1
3,131,822 - -1.2
3,131,822 - +0.4
3,131,822 - -0.4
3,131,822 - -0.9
3,131,826 - -0.5
3,131,826 - +0.2
3,131,826 - -0.2
3,131,826 - +0.4
3,131,826 - +0.4
3,131,826 - -0.2
3,131,826 - -1.1
3,131,826 - -0.7
3,131,826 - -0.5
3,131,826 - -2.9
3,131,826 - +0.1
3,131,826 - -1.4
3,131,826 - -1.4
3,131,826 - +0.1
3,131,826 - -0.4
3,131,826 - -0.8
3,131,850 + -0.5
3,131,850 + +1.6
3,131,890 - -1.8
3,131,957 + +0.1
3,131,957 + +0.1
3,131,957 + +0.3
3,131,957 + -1.3
3,131,957 + -0.0
3,131,957 + +0.8
3,131,957 + -0.7
3,131,957 + -0.9
3,131,958 - +0.6
3,131,958 - -1.5
3,131,958 - -0.4
3,131,958 - +0.4
3,131,958 - -1.1
3,131,958 - -1.4
3,131,958 - -0.3
3,131,958 - -2.6
3,132,262 + AO353_14090 0.86 -0.2
3,132,262 + AO353_14090 0.86 -1.8
3,132,262 + AO353_14090 0.86 +0.7
3,132,262 + AO353_14090 0.86 -0.7
3,132,262 + AO353_14090 0.86 +1.1
3,132,262 + AO353_14090 0.86 -1.4
3,132,262 + AO353_14090 0.86 -0.5
3,132,262 + AO353_14090 0.86 +0.3
3,132,262 + AO353_14090 0.86 -0.2
3,132,262 + AO353_14090 0.86 +1.5
3,132,262 + AO353_14090 0.86 +1.3
3,132,262 + AO353_14090 0.86 +0.6
3,132,262 + AO353_14090 0.86 -1.4
3,132,263 - AO353_14090 0.87 -0.7
3,132,263 - AO353_14090 0.87 +0.2
3,132,263 - AO353_14090 0.87 -0.9
3,132,263 - AO353_14090 0.87 -0.4
3,132,263 - +0.1
3,132,263 - AO353_14090 0.87 -0.6
3,132,263 - AO353_14090 0.87 -0.9
3,132,263 - AO353_14090 0.87 +1.6
3,132,263 - AO353_14090 0.87 +0.1
3,132,263 - AO353_14090 0.87 -0.2
3,132,263 - AO353_14090 0.87 +0.1
3,132,263 - AO353_14090 0.87 +0.2
3,132,263 - AO353_14090 0.87 +0.1
3,132,268 + AO353_14090 0.88 -0.9
3,132,268 + AO353_14090 0.88 -0.2
3,132,268 + AO353_14090 0.88 +0.1
3,132,269 - AO353_14090 0.88 -1.2
3,132,269 - AO353_14090 0.88 +1.0
3,132,309 + +0.4
3,132,309 + +0.1
3,132,309 + -2.4
3,132,310 - -0.4
3,132,310 - +0.1
3,132,347 + -0.4
3,132,347 + -1.1
3,132,347 + -0.6
3,132,347 + +2.6
3,132,347 + +0.4
3,132,347 + -0.5
3,132,347 + -1.2
3,132,347 + +0.6
3,132,347 + +1.0
3,132,348 - +0.4
3,132,348 - +0.1
3,132,348 - -1.2
3,132,348 - -0.9
3,132,348 - -0.4
3,132,348 - -1.9
3,132,348 - -1.3
3,132,348 - -1.4
3,132,348 - +0.1
3,132,348 - -1.1
3,132,348 - -0.6
3,132,348 - -0.9
3,132,348 - -0.7
3,132,348 - +0.6
3,132,349 + -0.9
3,132,349 + -1.8
3,132,349 + +0.9
3,132,349 + -0.0
3,132,350 - -1.7
3,132,350 - -0.4
3,132,351 + -0.1
3,132,352 - +0.6
3,132,352 - +0.4
3,132,359 + +1.4
3,132,428 + +0.2
3,132,428 + -1.1
3,132,428 + +0.6
3,132,428 + -0.7
3,132,429 - +1.5
3,132,429 - +2.6
3,132,429 - +1.9
3,132,429 - -1.7
3,132,429 - +1.2

Or see this region's nucleotide sequence