Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12870

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12865 and AO353_12870 are separated by 382 nucleotidesAO353_12870 and AO353_12875 are separated by 187 nucleotides AO353_12865: AO353_12865 - pyruvate dehydrogenase, at 2,844,709 to 2,847,354 _12865 AO353_12870: AO353_12870 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase, at 2,847,737 to 2,850,676 _12870 AO353_12875: AO353_12875 - ADP-heptose--LPS heptosyltransferase, at 2,850,864 to 2,851,898 _12875 Position (kb) 2847 2848 2849 2850 2851Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2847.429 kb on - strandat 2847.508 kb on + strandat 2847.509 kb on - strandat 2847.510 kb on + strandat 2847.511 kb on - strandat 2847.512 kb on + strandat 2847.513 kb on - strandat 2847.513 kb on - strandat 2847.513 kb on - strandat 2847.513 kb on - strandat 2847.513 kb on - strandat 2847.519 kb on - strandat 2847.521 kb on + strandat 2847.522 kb on - strandat 2847.568 kb on + strandat 2847.569 kb on - strandat 2847.602 kb on - strandat 2847.602 kb on - strandat 2847.700 kb on + strandat 2847.731 kb on + strandat 2848.056 kb on + strand, within AO353_12870at 2848.057 kb on - strand, within AO353_12870at 2848.057 kb on - strand, within AO353_12870at 2848.057 kb on - strand, within AO353_12870at 2848.057 kb on - strand, within AO353_12870at 2848.057 kb on - strand, within AO353_12870at 2848.057 kb on - strand, within AO353_12870at 2848.057 kb on - strand, within AO353_12870at 2848.059 kb on + strand, within AO353_12870at 2848.059 kb on + strand, within AO353_12870at 2848.059 kb on + strand, within AO353_12870at 2848.060 kb on - strand, within AO353_12870at 2848.060 kb on - strand, within AO353_12870at 2848.093 kb on + strand, within AO353_12870at 2848.181 kb on + strand, within AO353_12870at 2848.181 kb on + strand, within AO353_12870at 2848.181 kb on + strand, within AO353_12870at 2848.182 kb on - strand, within AO353_12870at 2848.182 kb on - strand, within AO353_12870at 2848.182 kb on - strand, within AO353_12870at 2848.182 kb on - strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.193 kb on + strand, within AO353_12870at 2848.194 kb on - strand, within AO353_12870at 2848.194 kb on - strand, within AO353_12870at 2848.194 kb on - strand, within AO353_12870at 2848.194 kb on - strand, within AO353_12870at 2848.194 kb on - strand, within AO353_12870at 2848.194 kb on - strand, within AO353_12870at 2848.479 kb on - strand, within AO353_12870at 2848.526 kb on + strand, within AO353_12870at 2848.526 kb on + strand, within AO353_12870at 2848.526 kb on + strand, within AO353_12870at 2848.526 kb on + strand, within AO353_12870at 2848.526 kb on + strand, within AO353_12870at 2848.526 kb on + strand, within AO353_12870at 2848.527 kb on - strand, within AO353_12870at 2848.529 kb on + strand, within AO353_12870at 2848.529 kb on + strand, within AO353_12870at 2848.529 kb on + strand, within AO353_12870at 2848.529 kb on + strand, within AO353_12870at 2848.529 kb on + strand, within AO353_12870at 2848.529 kb on + strand, within AO353_12870at 2848.530 kb on - strand, within AO353_12870at 2848.530 kb on - strand, within AO353_12870at 2848.530 kb on - strand, within AO353_12870at 2848.650 kb on - strand, within AO353_12870at 2848.775 kb on - strand, within AO353_12870at 2848.837 kb on - strand, within AO353_12870at 2848.839 kb on + strand, within AO353_12870at 2848.839 kb on + strand, within AO353_12870at 2848.839 kb on + strand, within AO353_12870at 2848.839 kb on + strand, within AO353_12870at 2848.839 kb on + strand, within AO353_12870at 2848.839 kb on + strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.840 kb on - strand, within AO353_12870at 2848.845 kb on + strand, within AO353_12870at 2848.846 kb on - strand, within AO353_12870at 2848.871 kb on + strand, within AO353_12870at 2848.871 kb on + strand, within AO353_12870at 2848.871 kb on + strand, within AO353_12870at 2848.872 kb on - strand, within AO353_12870at 2848.925 kb on + strand, within AO353_12870at 2849.011 kb on + strand, within AO353_12870at 2849.011 kb on + strand, within AO353_12870at 2849.011 kb on + strand, within AO353_12870at 2849.011 kb on + strand, within AO353_12870at 2849.011 kb on + strand, within AO353_12870at 2849.011 kb on + strand, within AO353_12870at 2849.011 kb on + strand, within AO353_12870at 2849.011 kb on + strand, within AO353_12870at 2849.012 kb on - strand, within AO353_12870at 2849.012 kb on - strand, within AO353_12870at 2849.012 kb on - strand, within AO353_12870at 2849.012 kb on - strand, within AO353_12870at 2849.012 kb on - strand, within AO353_12870at 2849.057 kb on + strand, within AO353_12870at 2849.057 kb on + strand, within AO353_12870at 2849.057 kb on + strand, within AO353_12870at 2849.058 kb on - strand, within AO353_12870at 2849.058 kb on - strand, within AO353_12870at 2849.058 kb on - strand, within AO353_12870at 2849.058 kb on - strand, within AO353_12870at 2849.320 kb on + strand, within AO353_12870at 2849.320 kb on + strand, within AO353_12870at 2849.321 kb on - strand, within AO353_12870at 2849.321 kb on - strand, within AO353_12870at 2849.420 kb on + strand, within AO353_12870at 2849.420 kb on + strand, within AO353_12870at 2849.420 kb on + strand, within AO353_12870at 2849.420 kb on + strand, within AO353_12870at 2849.421 kb on - strand, within AO353_12870at 2849.421 kb on - strand, within AO353_12870at 2849.421 kb on - strand, within AO353_12870at 2849.427 kb on + strand, within AO353_12870at 2849.427 kb on + strand, within AO353_12870at 2849.428 kb on - strand, within AO353_12870at 2849.428 kb on - strand, within AO353_12870at 2849.428 kb on - strand, within AO353_12870at 2849.428 kb on - strandat 2849.472 kb on + strand, within AO353_12870at 2849.472 kb on + strand, within AO353_12870at 2849.472 kb on + strand, within AO353_12870at 2849.472 kb on + strand, within AO353_12870at 2849.472 kb on + strand, within AO353_12870at 2849.472 kb on + strand, within AO353_12870at 2849.473 kb on - strand, within AO353_12870at 2849.473 kb on - strand, within AO353_12870at 2849.473 kb on - strand, within AO353_12870at 2849.473 kb on - strand, within AO353_12870at 2849.473 kb on - strand, within AO353_12870at 2849.732 kb on + strand, within AO353_12870at 2849.732 kb on + strand, within AO353_12870at 2849.733 kb on - strand, within AO353_12870at 2849.733 kb on - strand, within AO353_12870at 2849.733 kb on - strand, within AO353_12870at 2849.733 kb on - strand, within AO353_12870at 2849.733 kb on - strand, within AO353_12870at 2849.804 kb on + strand, within AO353_12870at 2849.804 kb on + strand, within AO353_12870at 2849.804 kb on + strand, within AO353_12870at 2849.804 kb on + strand, within AO353_12870at 2849.805 kb on - strand, within AO353_12870at 2850.047 kb on + strand, within AO353_12870at 2850.047 kb on + strand, within AO353_12870at 2850.047 kb on + strand, within AO353_12870at 2850.047 kb on + strand, within AO353_12870at 2850.047 kb on + strand, within AO353_12870at 2850.048 kb on - strand, within AO353_12870at 2850.048 kb on - strand, within AO353_12870at 2850.048 kb on - strand, within AO353_12870at 2850.048 kb on - strand, within AO353_12870at 2850.048 kb on - strand, within AO353_12870at 2850.048 kb on - strand, within AO353_12870at 2850.048 kb on - strand, within AO353_12870at 2850.122 kb on + strand, within AO353_12870at 2850.123 kb on - strand, within AO353_12870at 2850.252 kb on + strand, within AO353_12870at 2850.253 kb on - strand, within AO353_12870at 2850.391 kb on + strandat 2850.419 kb on + strandat 2850.419 kb on + strandat 2850.419 kb on + strandat 2850.419 kb on + strandat 2850.464 kb on + strandat 2850.466 kb on + strandat 2850.472 kb on + strandat 2850.548 kb on + strandat 2850.548 kb on + strandat 2850.548 kb on + strandat 2850.550 kb on + strandat 2850.550 kb on + strandat 2850.550 kb on + strandat 2850.550 kb on + strandat 2850.550 kb on + strandat 2850.550 kb on + strandat 2850.772 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.834 kb on + strandat 2850.859 kb on + strandat 2850.863 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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2,847,429 - +2.7
2,847,508 + +1.7
2,847,509 - -1.1
2,847,510 + -0.1
2,847,511 - +1.3
2,847,512 + +0.2
2,847,513 - +1.7
2,847,513 - +1.3
2,847,513 - -0.6
2,847,513 - -0.3
2,847,513 - +0.4
2,847,519 - -0.1
2,847,521 + +0.5
2,847,522 - +1.6
2,847,568 + +2.0
2,847,569 - +1.7
2,847,602 - +0.3
2,847,602 - +1.1
2,847,700 + +2.2
2,847,731 + +0.6
2,848,056 + AO353_12870 0.11 -0.7
2,848,057 - AO353_12870 0.11 -0.8
2,848,057 - AO353_12870 0.11 -1.4
2,848,057 - AO353_12870 0.11 -0.8
2,848,057 - AO353_12870 0.11 -0.7
2,848,057 - AO353_12870 0.11 +0.4
2,848,057 - AO353_12870 0.11 -3.2
2,848,057 - AO353_12870 0.11 -1.4
2,848,059 + AO353_12870 0.11 -0.3
2,848,059 + AO353_12870 0.11 -1.1
2,848,059 + AO353_12870 0.11 -0.5
2,848,060 - AO353_12870 0.11 -1.5
2,848,060 - AO353_12870 0.11 -0.7
2,848,093 + AO353_12870 0.12 -0.6
2,848,181 + AO353_12870 0.15 +0.2
2,848,181 + AO353_12870 0.15 +0.1
2,848,181 + AO353_12870 0.15 -0.8
2,848,182 - AO353_12870 0.15 -1.2
2,848,182 - AO353_12870 0.15 -1.4
2,848,182 - AO353_12870 0.15 -2.3
2,848,182 - AO353_12870 0.15 -1.0
2,848,193 + AO353_12870 0.16 -0.9
2,848,193 + AO353_12870 0.16 -2.9
2,848,193 + AO353_12870 0.16 -1.1
2,848,193 + AO353_12870 0.16 -0.5
2,848,193 + AO353_12870 0.16 -1.0
2,848,193 + AO353_12870 0.16 -0.8
2,848,193 + AO353_12870 0.16 -1.2
2,848,193 + AO353_12870 0.16 -1.1
2,848,193 + AO353_12870 0.16 -0.3
2,848,194 - AO353_12870 0.16 -1.0
2,848,194 - AO353_12870 0.16 -1.8
2,848,194 - AO353_12870 0.16 -2.0
2,848,194 - AO353_12870 0.16 +0.2
2,848,194 - AO353_12870 0.16 -2.2
2,848,194 - AO353_12870 0.16 -0.8
2,848,479 - AO353_12870 0.25 -1.1
2,848,526 + AO353_12870 0.27 -1.7
2,848,526 + AO353_12870 0.27 +0.2
2,848,526 + AO353_12870 0.27 -0.5
2,848,526 + AO353_12870 0.27 -2.2
2,848,526 + AO353_12870 0.27 -1.0
2,848,526 + AO353_12870 0.27 -0.8
2,848,527 - AO353_12870 0.27 -1.8
2,848,529 + AO353_12870 0.27 -0.0
2,848,529 + AO353_12870 0.27 -1.2
2,848,529 + AO353_12870 0.27 +0.4
2,848,529 + AO353_12870 0.27 -1.8
2,848,529 + AO353_12870 0.27 -0.5
2,848,529 + AO353_12870 0.27 -0.5
2,848,530 - AO353_12870 0.27 -1.7
2,848,530 - AO353_12870 0.27 -1.3
2,848,530 - AO353_12870 0.27 -1.4
2,848,650 - AO353_12870 0.31 -1.3
2,848,775 - AO353_12870 0.35 -0.4
2,848,837 - AO353_12870 0.37 -1.5
2,848,839 + AO353_12870 0.37 -1.1
2,848,839 + AO353_12870 0.37 -3.4
2,848,839 + AO353_12870 0.37 -0.8
2,848,839 + AO353_12870 0.37 -1.0
2,848,839 + AO353_12870 0.37 +0.5
2,848,839 + AO353_12870 0.37 -1.0
2,848,840 - AO353_12870 0.38 -1.3
2,848,840 - AO353_12870 0.38 +0.3
2,848,840 - AO353_12870 0.38 -2.0
2,848,840 - AO353_12870 0.38 -3.6
2,848,840 - AO353_12870 0.38 -4.2
2,848,840 - AO353_12870 0.38 +0.0
2,848,840 - AO353_12870 0.38 -2.0
2,848,840 - AO353_12870 0.38 -0.3
2,848,840 - AO353_12870 0.38 -0.1
2,848,840 - AO353_12870 0.38 -0.2
2,848,840 - AO353_12870 0.38 +0.2
2,848,845 + AO353_12870 0.38 -1.8
2,848,846 - AO353_12870 0.38 -3.2
2,848,871 + AO353_12870 0.39 -0.0
2,848,871 + AO353_12870 0.39 -1.7
2,848,871 + AO353_12870 0.39 -0.9
2,848,872 - AO353_12870 0.39 -2.4
2,848,925 + AO353_12870 0.40 -1.5
2,849,011 + AO353_12870 0.43 -1.6
2,849,011 + AO353_12870 0.43 +0.4
2,849,011 + AO353_12870 0.43 -0.4
2,849,011 + AO353_12870 0.43 -0.6
2,849,011 + AO353_12870 0.43 -0.1
2,849,011 + AO353_12870 0.43 -0.2
2,849,011 + AO353_12870 0.43 -2.3
2,849,011 + AO353_12870 0.43 -1.1
2,849,012 - AO353_12870 0.43 -0.7
2,849,012 - AO353_12870 0.43 -1.7
2,849,012 - AO353_12870 0.43 -0.3
2,849,012 - AO353_12870 0.43 -2.4
2,849,012 - AO353_12870 0.43 +0.5
2,849,057 + AO353_12870 0.45 +0.3
2,849,057 + AO353_12870 0.45 -2.6
2,849,057 + AO353_12870 0.45 +0.0
2,849,058 - AO353_12870 0.45 -1.7
2,849,058 - AO353_12870 0.45 +0.6
2,849,058 - AO353_12870 0.45 -0.9
2,849,058 - AO353_12870 0.45 +1.2
2,849,320 + AO353_12870 0.54 -1.3
2,849,320 + AO353_12870 0.54 -1.4
2,849,321 - AO353_12870 0.54 -0.3
2,849,321 - AO353_12870 0.54 +0.2
2,849,420 + AO353_12870 0.57 -2.3
2,849,420 + AO353_12870 0.57 -2.6
2,849,420 + AO353_12870 0.57 -3.2
2,849,420 + AO353_12870 0.57 -0.5
2,849,421 - AO353_12870 0.57 -2.3
2,849,421 - AO353_12870 0.57 -0.8
2,849,421 - AO353_12870 0.57 +0.2
2,849,427 + AO353_12870 0.57 -0.7
2,849,427 + AO353_12870 0.57 -1.7
2,849,428 - AO353_12870 0.58 -2.0
2,849,428 - AO353_12870 0.58 -0.8
2,849,428 - AO353_12870 0.58 -0.5
2,849,428 - +0.7
2,849,472 + AO353_12870 0.59 +1.0
2,849,472 + AO353_12870 0.59 -0.7
2,849,472 + AO353_12870 0.59 +1.4
2,849,472 + AO353_12870 0.59 -2.6
2,849,472 + AO353_12870 0.59 +0.7
2,849,472 + AO353_12870 0.59 +0.3
2,849,473 - AO353_12870 0.59 +1.7
2,849,473 - AO353_12870 0.59 -0.1
2,849,473 - AO353_12870 0.59 +0.4
2,849,473 - AO353_12870 0.59 -0.4
2,849,473 - AO353_12870 0.59 -2.3
2,849,732 + AO353_12870 0.68 -0.6
2,849,732 + AO353_12870 0.68 -2.4
2,849,733 - AO353_12870 0.68 +0.7
2,849,733 - AO353_12870 0.68 -1.1
2,849,733 - AO353_12870 0.68 -1.3
2,849,733 - AO353_12870 0.68 -2.5
2,849,733 - AO353_12870 0.68 -1.6
2,849,804 + AO353_12870 0.70 -2.6
2,849,804 + AO353_12870 0.70 -1.8
2,849,804 + AO353_12870 0.70 -0.8
2,849,804 + AO353_12870 0.70 -2.0
2,849,805 - AO353_12870 0.70 -1.8
2,850,047 + AO353_12870 0.79 -0.3
2,850,047 + AO353_12870 0.79 -1.3
2,850,047 + AO353_12870 0.79 -2.8
2,850,047 + AO353_12870 0.79 -0.4
2,850,047 + AO353_12870 0.79 -2.5
2,850,048 - AO353_12870 0.79 -2.5
2,850,048 - AO353_12870 0.79 -1.1
2,850,048 - AO353_12870 0.79 -1.1
2,850,048 - AO353_12870 0.79 -0.7
2,850,048 - AO353_12870 0.79 -1.3
2,850,048 - AO353_12870 0.79 -1.7
2,850,048 - AO353_12870 0.79 -0.8
2,850,122 + AO353_12870 0.81 -2.3
2,850,123 - AO353_12870 0.81 -1.1
2,850,252 + AO353_12870 0.86 -1.2
2,850,253 - AO353_12870 0.86 -2.7
2,850,391 + -1.8
2,850,419 + -1.6
2,850,419 + -2.6
2,850,419 + -0.4
2,850,419 + -1.7
2,850,464 + -2.4
2,850,466 + -1.1
2,850,472 + -1.2
2,850,548 + -2.2
2,850,548 + -2.9
2,850,548 + -1.6
2,850,550 + -1.2
2,850,550 + -0.3
2,850,550 + -2.1
2,850,550 + -2.3
2,850,550 + -2.5
2,850,550 + -0.3
2,850,772 + -1.1
2,850,834 + -0.8
2,850,834 + -1.6
2,850,834 + +1.0
2,850,834 + +2.7
2,850,834 + -1.8
2,850,834 + +0.0
2,850,834 + +0.9
2,850,834 + +0.7
2,850,834 + +0.7
2,850,834 + -0.3
2,850,834 + +0.0
2,850,834 + +0.9
2,850,834 + -0.7
2,850,859 + -0.5
2,850,863 + +0.4

Or see this region's nucleotide sequence