Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12665

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12660 and AO353_12665 overlap by 20 nucleotidesAO353_12665 and AO353_12670 overlap by 4 nucleotidesAO353_12670 and AO353_12675 are separated by 179 nucleotides AO353_12660: AO353_12660 - histidine ammonia-lyase, at 2,786,806 to 2,788,350 _12660 AO353_12665: AO353_12665 - glycosyl transferase, at 2,788,331 to 2,789,278 _12665 AO353_12670: AO353_12670 - glycosyl transferase, at 2,789,275 to 2,790,009 _12670 AO353_12675: AO353_12675 - AMP-binding protein, at 2,790,189 to 2,791,868 _12675 Position (kb) 2788 2789 2790Strain fitness (log2 ratio) -2 -1 0 1 2at 2787.350 kb on + strand, within AO353_12660at 2787.350 kb on + strand, within AO353_12660at 2787.634 kb on - strand, within AO353_12660at 2787.690 kb on - strand, within AO353_12660at 2787.704 kb on + strand, within AO353_12660at 2787.704 kb on + strand, within AO353_12660at 2787.705 kb on - strand, within AO353_12660at 2787.705 kb on - strand, within AO353_12660at 2787.705 kb on - strand, within AO353_12660at 2787.775 kb on + strand, within AO353_12660at 2787.775 kb on + strand, within AO353_12660at 2787.875 kb on + strand, within AO353_12660at 2787.875 kb on + strand, within AO353_12660at 2787.876 kb on - strand, within AO353_12660at 2787.876 kb on - strand, within AO353_12660at 2787.876 kb on - strand, within AO353_12660at 2787.876 kb on - strand, within AO353_12660at 2788.088 kb on + strand, within AO353_12660at 2788.089 kb on - strand, within AO353_12660at 2788.089 kb on - strand, within AO353_12660at 2788.089 kb on - strand, within AO353_12660at 2788.089 kb on - strand, within AO353_12660at 2788.089 kb on - strand, within AO353_12660at 2788.170 kb on - strand, within AO353_12660at 2788.170 kb on - strand, within AO353_12660at 2788.236 kb on - strandat 2788.368 kb on + strandat 2788.426 kb on - strand, within AO353_12665at 2788.475 kb on + strand, within AO353_12665at 2789.140 kb on - strand, within AO353_12665at 2789.154 kb on + strand, within AO353_12665at 2789.154 kb on + strand, within AO353_12665at 2789.155 kb on - strand, within AO353_12665at 2789.155 kb on - strand, within AO353_12665at 2789.352 kb on + strand, within AO353_12670at 2789.353 kb on - strand, within AO353_12670at 2789.353 kb on - strand, within AO353_12670at 2789.405 kb on + strand, within AO353_12670at 2789.621 kb on + strand, within AO353_12670at 2789.621 kb on + strand, within AO353_12670at 2789.622 kb on - strand, within AO353_12670at 2789.622 kb on - strand, within AO353_12670at 2789.622 kb on - strand, within AO353_12670at 2789.622 kb on - strand, within AO353_12670at 2789.651 kb on + strand, within AO353_12670at 2789.978 kb on + strandat 2789.978 kb on + strandat 2789.978 kb on + strandat 2789.979 kb on - strandat 2789.979 kb on - strandat 2789.979 kb on - strandat 2790.003 kb on + strandat 2790.004 kb on - strandat 2790.184 kb on + strandat 2790.184 kb on + strandat 2790.184 kb on + strandat 2790.184 kb on + strandat 2790.185 kb on - strandat 2790.185 kb on - strandat 2790.185 kb on - strandat 2790.185 kb on - strandat 2790.191 kb on - strandat 2790.191 kb on - strandat 2790.210 kb on + strandat 2790.210 kb on + strandat 2790.259 kb on + strandat 2790.259 kb on + strandat 2790.260 kb on - strandat 2790.260 kb on - strandat 2790.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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2,787,350 + AO353_12660 0.35 +0.6
2,787,350 + AO353_12660 0.35 -0.4
2,787,634 - AO353_12660 0.54 +0.2
2,787,690 - AO353_12660 0.57 +0.1
2,787,704 + AO353_12660 0.58 +1.3
2,787,704 + AO353_12660 0.58 +0.9
2,787,705 - AO353_12660 0.58 +0.7
2,787,705 - AO353_12660 0.58 -1.9
2,787,705 - AO353_12660 0.58 -0.5
2,787,775 + AO353_12660 0.63 +0.3
2,787,775 + AO353_12660 0.63 +1.2
2,787,875 + AO353_12660 0.69 -0.4
2,787,875 + AO353_12660 0.69 +0.4
2,787,876 - AO353_12660 0.69 +0.8
2,787,876 - AO353_12660 0.69 +0.1
2,787,876 - AO353_12660 0.69 -0.5
2,787,876 - AO353_12660 0.69 +0.4
2,788,088 + AO353_12660 0.83 -0.4
2,788,089 - AO353_12660 0.83 +0.2
2,788,089 - AO353_12660 0.83 +0.2
2,788,089 - AO353_12660 0.83 +1.5
2,788,089 - AO353_12660 0.83 -0.9
2,788,089 - AO353_12660 0.83 -1.5
2,788,170 - AO353_12660 0.88 -1.0
2,788,170 - AO353_12660 0.88 +0.0
2,788,236 - -0.9
2,788,368 + +0.4
2,788,426 - AO353_12665 0.10 +0.7
2,788,475 + AO353_12665 0.15 +0.1
2,789,140 - AO353_12665 0.85 +0.0
2,789,154 + AO353_12665 0.87 +0.2
2,789,154 + AO353_12665 0.87 +0.8
2,789,155 - AO353_12665 0.87 -0.6
2,789,155 - AO353_12665 0.87 +0.8
2,789,352 + AO353_12670 0.10 -0.4
2,789,353 - AO353_12670 0.11 +1.5
2,789,353 - AO353_12670 0.11 -0.2
2,789,405 + AO353_12670 0.18 +0.4
2,789,621 + AO353_12670 0.47 -2.2
2,789,621 + AO353_12670 0.47 +0.3
2,789,622 - AO353_12670 0.47 +1.1
2,789,622 - AO353_12670 0.47 +0.5
2,789,622 - AO353_12670 0.47 +1.8
2,789,622 - AO353_12670 0.47 +1.0
2,789,651 + AO353_12670 0.51 +1.0
2,789,978 + -1.3
2,789,978 + +0.3
2,789,978 + +0.2
2,789,979 - -0.8
2,789,979 - +0.2
2,789,979 - +0.8
2,790,003 + -0.2
2,790,004 - +0.7
2,790,184 + +0.5
2,790,184 + +0.6
2,790,184 + +0.2
2,790,184 + -1.8
2,790,185 - -0.8
2,790,185 - -0.2
2,790,185 - +0.2
2,790,185 - -2.0
2,790,191 - -0.7
2,790,191 - -0.5
2,790,210 + -0.9
2,790,210 + +0.6
2,790,259 + -0.9
2,790,259 + +0.2
2,790,260 - +1.4
2,790,260 - -1.0
2,790,260 - +0.2

Or see this region's nucleotide sequence