Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_12660 and AO353_12665 overlap by 20 nucleotides AO353_12665 and AO353_12670 overlap by 4 nucleotides AO353_12670 and AO353_12675 are separated by 179 nucleotides
AO353_12660: AO353_12660 - histidine ammonia-lyase, at 2,786,806 to 2,788,350
_12660
AO353_12665: AO353_12665 - glycosyl transferase, at 2,788,331 to 2,789,278
_12665
AO353_12670: AO353_12670 - glycosyl transferase, at 2,789,275 to 2,790,009
_12670
AO353_12675: AO353_12675 - AMP-binding protein, at 2,790,189 to 2,791,868
_12675
Position (kb)
2788
2789
2790 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2787.350 kb on + strand, within AO353_12660 at 2787.350 kb on + strand, within AO353_12660 at 2787.634 kb on - strand, within AO353_12660 at 2787.690 kb on - strand, within AO353_12660 at 2787.704 kb on + strand, within AO353_12660 at 2787.704 kb on + strand, within AO353_12660 at 2787.705 kb on - strand, within AO353_12660 at 2787.705 kb on - strand, within AO353_12660 at 2787.705 kb on - strand, within AO353_12660 at 2787.775 kb on + strand, within AO353_12660 at 2787.775 kb on + strand, within AO353_12660 at 2787.875 kb on + strand, within AO353_12660 at 2787.875 kb on + strand, within AO353_12660 at 2787.876 kb on - strand, within AO353_12660 at 2787.876 kb on - strand, within AO353_12660 at 2787.876 kb on - strand, within AO353_12660 at 2787.876 kb on - strand, within AO353_12660 at 2788.088 kb on + strand, within AO353_12660 at 2788.089 kb on - strand, within AO353_12660 at 2788.089 kb on - strand, within AO353_12660 at 2788.089 kb on - strand, within AO353_12660 at 2788.089 kb on - strand, within AO353_12660 at 2788.089 kb on - strand, within AO353_12660 at 2788.170 kb on - strand, within AO353_12660 at 2788.170 kb on - strand, within AO353_12660 at 2788.236 kb on - strand at 2788.368 kb on + strand at 2788.426 kb on - strand, within AO353_12665 at 2788.475 kb on + strand, within AO353_12665 at 2789.140 kb on - strand, within AO353_12665 at 2789.154 kb on + strand, within AO353_12665 at 2789.154 kb on + strand, within AO353_12665 at 2789.155 kb on - strand, within AO353_12665 at 2789.155 kb on - strand, within AO353_12665 at 2789.352 kb on + strand, within AO353_12670 at 2789.353 kb on - strand, within AO353_12670 at 2789.353 kb on - strand, within AO353_12670 at 2789.405 kb on + strand, within AO353_12670 at 2789.621 kb on + strand, within AO353_12670 at 2789.621 kb on + strand, within AO353_12670 at 2789.622 kb on - strand, within AO353_12670 at 2789.622 kb on - strand, within AO353_12670 at 2789.622 kb on - strand, within AO353_12670 at 2789.622 kb on - strand, within AO353_12670 at 2789.651 kb on + strand, within AO353_12670 at 2789.978 kb on + strand at 2789.978 kb on + strand at 2789.978 kb on + strand at 2789.979 kb on - strand at 2789.979 kb on - strand at 2789.979 kb on - strand at 2790.003 kb on + strand at 2790.004 kb on - strand at 2790.184 kb on + strand at 2790.184 kb on + strand at 2790.184 kb on + strand at 2790.184 kb on + strand at 2790.185 kb on - strand at 2790.185 kb on - strand at 2790.185 kb on - strand at 2790.185 kb on - strand at 2790.191 kb on - strand at 2790.191 kb on - strand at 2790.210 kb on + strand at 2790.210 kb on + strand at 2790.259 kb on + strand at 2790.259 kb on + strand at 2790.260 kb on - strand at 2790.260 kb on - strand at 2790.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 2,787,350 + AO353_12660 0.35 +0.6 2,787,350 + AO353_12660 0.35 -0.4 2,787,634 - AO353_12660 0.54 +0.2 2,787,690 - AO353_12660 0.57 +0.1 2,787,704 + AO353_12660 0.58 +1.3 2,787,704 + AO353_12660 0.58 +0.9 2,787,705 - AO353_12660 0.58 +0.7 2,787,705 - AO353_12660 0.58 -1.9 2,787,705 - AO353_12660 0.58 -0.5 2,787,775 + AO353_12660 0.63 +0.3 2,787,775 + AO353_12660 0.63 +1.2 2,787,875 + AO353_12660 0.69 -0.4 2,787,875 + AO353_12660 0.69 +0.4 2,787,876 - AO353_12660 0.69 +0.8 2,787,876 - AO353_12660 0.69 +0.1 2,787,876 - AO353_12660 0.69 -0.5 2,787,876 - AO353_12660 0.69 +0.4 2,788,088 + AO353_12660 0.83 -0.4 2,788,089 - AO353_12660 0.83 +0.2 2,788,089 - AO353_12660 0.83 +0.2 2,788,089 - AO353_12660 0.83 +1.5 2,788,089 - AO353_12660 0.83 -0.9 2,788,089 - AO353_12660 0.83 -1.5 2,788,170 - AO353_12660 0.88 -1.0 2,788,170 - AO353_12660 0.88 +0.0 2,788,236 - -0.9 2,788,368 + +0.4 2,788,426 - AO353_12665 0.10 +0.7 2,788,475 + AO353_12665 0.15 +0.1 2,789,140 - AO353_12665 0.85 +0.0 2,789,154 + AO353_12665 0.87 +0.2 2,789,154 + AO353_12665 0.87 +0.8 2,789,155 - AO353_12665 0.87 -0.6 2,789,155 - AO353_12665 0.87 +0.8 2,789,352 + AO353_12670 0.10 -0.4 2,789,353 - AO353_12670 0.11 +1.5 2,789,353 - AO353_12670 0.11 -0.2 2,789,405 + AO353_12670 0.18 +0.4 2,789,621 + AO353_12670 0.47 -2.2 2,789,621 + AO353_12670 0.47 +0.3 2,789,622 - AO353_12670 0.47 +1.1 2,789,622 - AO353_12670 0.47 +0.5 2,789,622 - AO353_12670 0.47 +1.8 2,789,622 - AO353_12670 0.47 +1.0 2,789,651 + AO353_12670 0.51 +1.0 2,789,978 + -1.3 2,789,978 + +0.3 2,789,978 + +0.2 2,789,979 - -0.8 2,789,979 - +0.2 2,789,979 - +0.8 2,790,003 + -0.2 2,790,004 - +0.7 2,790,184 + +0.5 2,790,184 + +0.6 2,790,184 + +0.2 2,790,184 + -1.8 2,790,185 - -0.8 2,790,185 - -0.2 2,790,185 - +0.2 2,790,185 - -2.0 2,790,191 - -0.7 2,790,191 - -0.5 2,790,210 + -0.9 2,790,210 + +0.6 2,790,259 + -0.9 2,790,259 + +0.2 2,790,260 - +1.4 2,790,260 - -1.0 2,790,260 - +0.2
Or see this region's nucleotide sequence