Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12480

Experiment: L-Arginine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_12475 and AO353_12480 overlap by 1 nucleotidesAO353_12480 and AO353_12485 overlap by 4 nucleotidesAO353_12485 and AO353_12490 overlap by 4 nucleotides AO353_12475: AO353_12475 - pilus assembly protein PilM, at 2,745,782 to 2,746,846 _12475 AO353_12480: AO353_12480 - pilus assembly protein PilN, at 2,746,846 to 2,747,412 _12480 AO353_12485: AO353_12485 - pilus assembly protein PilP, at 2,747,409 to 2,748,032 _12485 AO353_12490: AO353_12490 - pilus assembly protein PilP, at 2,748,029 to 2,748,556 _12490 Position (kb) 2746 2747 2748Strain fitness (log2 ratio) -2 -1 0 1 2at 2745.861 kb on + strandat 2745.861 kb on + strandat 2745.862 kb on - strandat 2745.862 kb on - strandat 2745.862 kb on - strandat 2745.896 kb on + strand, within AO353_12475at 2745.903 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.121 kb on + strand, within AO353_12475at 2746.122 kb on - strand, within AO353_12475at 2746.122 kb on - strand, within AO353_12475at 2746.122 kb on - strand, within AO353_12475at 2746.122 kb on - strand, within AO353_12475at 2746.122 kb on - strand, within AO353_12475at 2746.122 kb on - strand, within AO353_12475at 2746.122 kb on - strand, within AO353_12475at 2746.203 kb on + strand, within AO353_12475at 2746.203 kb on + strand, within AO353_12475at 2746.203 kb on + strand, within AO353_12475at 2746.203 kb on + strand, within AO353_12475at 2746.203 kb on + strand, within AO353_12475at 2746.204 kb on - strand, within AO353_12475at 2746.204 kb on - strand, within AO353_12475at 2746.204 kb on - strand, within AO353_12475at 2746.204 kb on - strand, within AO353_12475at 2746.204 kb on - strand, within AO353_12475at 2746.204 kb on - strand, within AO353_12475at 2746.204 kb on - strand, within AO353_12475at 2746.430 kb on + strand, within AO353_12475at 2746.430 kb on + strand, within AO353_12475at 2746.430 kb on + strand, within AO353_12475at 2746.431 kb on - strand, within AO353_12475at 2746.431 kb on - strand, within AO353_12475at 2746.431 kb on - strand, within AO353_12475at 2746.431 kb on - strand, within AO353_12475at 2746.431 kb on - strand, within AO353_12475at 2746.431 kb on - strand, within AO353_12475at 2746.487 kb on + strand, within AO353_12475at 2746.547 kb on + strand, within AO353_12475at 2746.547 kb on + strand, within AO353_12475at 2746.547 kb on + strand, within AO353_12475at 2746.547 kb on + strand, within AO353_12475at 2746.547 kb on + strand, within AO353_12475at 2746.548 kb on - strand, within AO353_12475at 2746.548 kb on - strand, within AO353_12475at 2746.634 kb on + strand, within AO353_12475at 2746.634 kb on + strand, within AO353_12475at 2746.634 kb on + strand, within AO353_12475at 2746.634 kb on + strand, within AO353_12475at 2746.634 kb on + strand, within AO353_12475at 2746.634 kb on + strand, within AO353_12475at 2746.634 kb on + strand, within AO353_12475at 2746.635 kb on - strand, within AO353_12475at 2746.635 kb on - strand, within AO353_12475at 2746.635 kb on - strand, within AO353_12475at 2746.635 kb on - strand, within AO353_12475at 2746.635 kb on - strand, within AO353_12475at 2746.635 kb on - strand, within AO353_12475at 2746.649 kb on + strand, within AO353_12475at 2746.649 kb on + strand, within AO353_12475at 2746.649 kb on + strand, within AO353_12475at 2746.649 kb on + strand, within AO353_12475at 2746.649 kb on + strand, within AO353_12475at 2746.650 kb on - strand, within AO353_12475at 2746.650 kb on - strand, within AO353_12475at 2746.650 kb on - strand, within AO353_12475at 2746.650 kb on - strand, within AO353_12475at 2746.650 kb on - strand, within AO353_12475at 2746.949 kb on + strand, within AO353_12480at 2746.949 kb on + strand, within AO353_12480at 2747.011 kb on + strand, within AO353_12480at 2747.011 kb on + strand, within AO353_12480at 2747.011 kb on + strand, within AO353_12480at 2747.012 kb on - strand, within AO353_12480at 2747.012 kb on - strand, within AO353_12480at 2747.012 kb on - strand, within AO353_12480at 2747.146 kb on - strand, within AO353_12480at 2747.146 kb on - strand, within AO353_12480at 2747.146 kb on - strand, within AO353_12480at 2747.146 kb on - strand, within AO353_12480at 2747.185 kb on + strand, within AO353_12480at 2747.185 kb on + strand, within AO353_12480at 2747.185 kb on + strand, within AO353_12480at 2747.185 kb on + strand, within AO353_12480at 2747.185 kb on + strand, within AO353_12480at 2747.185 kb on + strand, within AO353_12480at 2747.186 kb on - strand, within AO353_12480at 2747.186 kb on - strand, within AO353_12480at 2747.186 kb on - strand, within AO353_12480at 2747.186 kb on - strand, within AO353_12480at 2747.186 kb on - strand, within AO353_12480at 2747.186 kb on - strand, within AO353_12480at 2747.212 kb on - strand, within AO353_12480at 2747.212 kb on - strand, within AO353_12480at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.476 kb on + strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.477 kb on - strand, within AO353_12485at 2747.547 kb on + strand, within AO353_12485at 2747.548 kb on - strand, within AO353_12485at 2747.556 kb on + strand, within AO353_12485at 2747.556 kb on + strand, within AO353_12485at 2747.557 kb on - strand, within AO353_12485at 2747.661 kb on + strand, within AO353_12485at 2747.661 kb on + strand, within AO353_12485at 2747.661 kb on + strand, within AO353_12485at 2747.662 kb on - strand, within AO353_12485at 2747.662 kb on - strand, within AO353_12485at 2747.662 kb on - strand, within AO353_12485at 2747.753 kb on + strand, within AO353_12485at 2747.753 kb on + strand, within AO353_12485at 2747.753 kb on + strand, within AO353_12485at 2747.753 kb on + strand, within AO353_12485at 2747.753 kb on + strand, within AO353_12485at 2747.754 kb on - strand, within AO353_12485at 2747.754 kb on - strand, within AO353_12485at 2747.754 kb on - strand, within AO353_12485at 2747.754 kb on - strand, within AO353_12485at 2747.754 kb on - strand, within AO353_12485at 2747.754 kb on - strand, within AO353_12485at 2747.829 kb on + strand, within AO353_12485at 2747.829 kb on + strand, within AO353_12485at 2747.829 kb on + strand, within AO353_12485at 2747.829 kb on + strand, within AO353_12485at 2747.829 kb on + strand, within AO353_12485at 2747.829 kb on + strand, within AO353_12485at 2747.829 kb on + strand, within AO353_12485at 2747.830 kb on - strand, within AO353_12485at 2747.830 kb on - strand, within AO353_12485at 2747.830 kb on - strand, within AO353_12485at 2747.840 kb on - strand, within AO353_12485at 2747.869 kb on - strand, within AO353_12485at 2747.869 kb on - strand, within AO353_12485at 2747.869 kb on - strand, within AO353_12485at 2748.000 kb on + strandat 2748.001 kb on - strandat 2748.006 kb on + strandat 2748.007 kb on - strandat 2748.119 kb on + strand, within AO353_12490at 2748.119 kb on + strand, within AO353_12490at 2748.119 kb on + strand, within AO353_12490at 2748.119 kb on + strand, within AO353_12490at 2748.119 kb on + strand, within AO353_12490at 2748.119 kb on + strand, within AO353_12490at 2748.119 kb on + strand, within AO353_12490at 2748.119 kb on + strand, within AO353_12490at 2748.119 kb on + strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.120 kb on - strand, within AO353_12490at 2748.197 kb on + strand, within AO353_12490at 2748.197 kb on + strand, within AO353_12490at 2748.198 kb on - strand, within AO353_12490at 2748.198 kb on - strand, within AO353_12490at 2748.198 kb on - strand, within AO353_12490at 2748.198 kb on - strand, within AO353_12490at 2748.308 kb on + strand, within AO353_12490at 2748.309 kb on - strand, within AO353_12490at 2748.309 kb on - strand, within AO353_12490at 2748.309 kb on - strand, within AO353_12490at 2748.309 kb on - strand, within AO353_12490at 2748.309 kb on - strand, within AO353_12490at 2748.353 kb on - strand, within AO353_12490

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
remove
2,745,861 + +1.4
2,745,861 + +1.1
2,745,862 - +0.2
2,745,862 - -1.0
2,745,862 - +0.5
2,745,896 + AO353_12475 0.11 -0.4
2,745,903 + AO353_12475 0.11 -0.8
2,746,121 + AO353_12475 0.32 -0.5
2,746,121 + AO353_12475 0.32 +1.5
2,746,121 + AO353_12475 0.32 +0.6
2,746,121 + AO353_12475 0.32 +0.4
2,746,121 + AO353_12475 0.32 -0.7
2,746,121 + AO353_12475 0.32 +0.6
2,746,121 + AO353_12475 0.32 +0.2
2,746,121 + AO353_12475 0.32 +0.8
2,746,121 + AO353_12475 0.32 +1.3
2,746,121 + AO353_12475 0.32 +0.8
2,746,121 + AO353_12475 0.32 -0.5
2,746,122 - AO353_12475 0.32 +1.2
2,746,122 - AO353_12475 0.32 +0.6
2,746,122 - AO353_12475 0.32 +0.2
2,746,122 - AO353_12475 0.32 -0.1
2,746,122 - AO353_12475 0.32 -0.4
2,746,122 - AO353_12475 0.32 +0.7
2,746,122 - AO353_12475 0.32 -0.1
2,746,203 + AO353_12475 0.40 -0.1
2,746,203 + AO353_12475 0.40 +1.0
2,746,203 + AO353_12475 0.40 +0.6
2,746,203 + AO353_12475 0.40 +0.3
2,746,203 + AO353_12475 0.40 -1.1
2,746,204 - AO353_12475 0.40 +0.2
2,746,204 - AO353_12475 0.40 -0.2
2,746,204 - AO353_12475 0.40 -0.0
2,746,204 - AO353_12475 0.40 +1.1
2,746,204 - AO353_12475 0.40 +1.5
2,746,204 - AO353_12475 0.40 +0.4
2,746,204 - AO353_12475 0.40 -0.8
2,746,430 + AO353_12475 0.61 +0.6
2,746,430 + AO353_12475 0.61 +1.8
2,746,430 + AO353_12475 0.61 +0.6
2,746,431 - AO353_12475 0.61 -1.0
2,746,431 - AO353_12475 0.61 +0.5
2,746,431 - AO353_12475 0.61 +0.1
2,746,431 - AO353_12475 0.61 +1.5
2,746,431 - AO353_12475 0.61 +0.6
2,746,431 - AO353_12475 0.61 +0.0
2,746,487 + AO353_12475 0.66 +0.6
2,746,547 + AO353_12475 0.72 +1.8
2,746,547 + AO353_12475 0.72 -0.8
2,746,547 + AO353_12475 0.72 -0.5
2,746,547 + AO353_12475 0.72 +0.3
2,746,547 + AO353_12475 0.72 -0.3
2,746,548 - AO353_12475 0.72 -1.2
2,746,548 - AO353_12475 0.72 +1.1
2,746,634 + AO353_12475 0.80 +0.2
2,746,634 + AO353_12475 0.80 +0.0
2,746,634 + AO353_12475 0.80 +0.4
2,746,634 + AO353_12475 0.80 +0.1
2,746,634 + AO353_12475 0.80 +1.0
2,746,634 + AO353_12475 0.80 -0.9
2,746,634 + AO353_12475 0.80 -0.5
2,746,635 - AO353_12475 0.80 -0.8
2,746,635 - AO353_12475 0.80 -0.0
2,746,635 - AO353_12475 0.80 +0.0
2,746,635 - AO353_12475 0.80 +0.0
2,746,635 - AO353_12475 0.80 +0.1
2,746,635 - AO353_12475 0.80 -1.0
2,746,649 + AO353_12475 0.81 -0.7
2,746,649 + AO353_12475 0.81 +0.5
2,746,649 + AO353_12475 0.81 -0.8
2,746,649 + AO353_12475 0.81 +1.1
2,746,649 + AO353_12475 0.81 -0.3
2,746,650 - AO353_12475 0.82 -0.3
2,746,650 - AO353_12475 0.82 -1.0
2,746,650 - AO353_12475 0.82 +0.2
2,746,650 - AO353_12475 0.82 +0.2
2,746,650 - AO353_12475 0.82 +0.8
2,746,949 + AO353_12480 0.18 +0.8
2,746,949 + AO353_12480 0.18 +2.2
2,747,011 + AO353_12480 0.29 +0.5
2,747,011 + AO353_12480 0.29 +0.5
2,747,011 + AO353_12480 0.29 +0.6
2,747,012 - AO353_12480 0.29 -1.0
2,747,012 - AO353_12480 0.29 +1.1
2,747,012 - AO353_12480 0.29 -0.4
2,747,146 - AO353_12480 0.53 +1.2
2,747,146 - AO353_12480 0.53 +0.2
2,747,146 - AO353_12480 0.53 +0.1
2,747,146 - AO353_12480 0.53 -0.1
2,747,185 + AO353_12480 0.60 +0.3
2,747,185 + AO353_12480 0.60 +0.2
2,747,185 + AO353_12480 0.60 -0.3
2,747,185 + AO353_12480 0.60 +1.0
2,747,185 + AO353_12480 0.60 -0.3
2,747,185 + AO353_12480 0.60 +0.4
2,747,186 - AO353_12480 0.60 +1.2
2,747,186 - AO353_12480 0.60 +0.5
2,747,186 - AO353_12480 0.60 +0.2
2,747,186 - AO353_12480 0.60 +1.1
2,747,186 - AO353_12480 0.60 +0.2
2,747,186 - AO353_12480 0.60 +1.0
2,747,212 - AO353_12480 0.65 +0.2
2,747,212 - AO353_12480 0.65 +1.1
2,747,476 + AO353_12485 0.11 -1.1
2,747,476 + AO353_12485 0.11 +0.1
2,747,476 + AO353_12485 0.11 -0.5
2,747,476 + AO353_12485 0.11 -0.4
2,747,476 + AO353_12485 0.11 +0.5
2,747,476 + AO353_12485 0.11 -0.5
2,747,476 + AO353_12485 0.11 -0.7
2,747,476 + AO353_12485 0.11 -2.1
2,747,476 + AO353_12485 0.11 +1.1
2,747,476 + AO353_12485 0.11 -0.0
2,747,476 + AO353_12485 0.11 +0.2
2,747,476 + AO353_12485 0.11 -0.3
2,747,476 + AO353_12485 0.11 +0.1
2,747,477 - AO353_12485 0.11 -0.4
2,747,477 - AO353_12485 0.11 -0.9
2,747,477 - AO353_12485 0.11 +0.1
2,747,477 - AO353_12485 0.11 +0.2
2,747,477 - AO353_12485 0.11 -1.1
2,747,477 - AO353_12485 0.11 +0.2
2,747,477 - AO353_12485 0.11 -0.2
2,747,477 - AO353_12485 0.11 -0.2
2,747,477 - AO353_12485 0.11 +1.2
2,747,477 - AO353_12485 0.11 +0.3
2,747,477 - AO353_12485 0.11 +0.6
2,747,477 - AO353_12485 0.11 -0.1
2,747,477 - AO353_12485 0.11 +0.2
2,747,477 - AO353_12485 0.11 +0.8
2,747,477 - AO353_12485 0.11 -0.4
2,747,477 - AO353_12485 0.11 -1.2
2,747,477 - AO353_12485 0.11 +1.2
2,747,477 - AO353_12485 0.11 -0.2
2,747,477 - AO353_12485 0.11 -0.5
2,747,477 - AO353_12485 0.11 +0.9
2,747,477 - AO353_12485 0.11 +0.6
2,747,547 + AO353_12485 0.22 -0.4
2,747,548 - AO353_12485 0.22 -0.9
2,747,556 + AO353_12485 0.24 -0.8
2,747,556 + AO353_12485 0.24 -0.2
2,747,557 - AO353_12485 0.24 -1.0
2,747,661 + AO353_12485 0.40 -0.2
2,747,661 + AO353_12485 0.40 -0.7
2,747,661 + AO353_12485 0.40 -1.0
2,747,662 - AO353_12485 0.41 -0.1
2,747,662 - AO353_12485 0.41 -0.6
2,747,662 - AO353_12485 0.41 +0.1
2,747,753 + AO353_12485 0.55 +1.1
2,747,753 + AO353_12485 0.55 -1.1
2,747,753 + AO353_12485 0.55 -0.3
2,747,753 + AO353_12485 0.55 +1.5
2,747,753 + AO353_12485 0.55 +0.2
2,747,754 - AO353_12485 0.55 -1.1
2,747,754 - AO353_12485 0.55 +0.1
2,747,754 - AO353_12485 0.55 -1.1
2,747,754 - AO353_12485 0.55 +0.5
2,747,754 - AO353_12485 0.55 +0.1
2,747,754 - AO353_12485 0.55 -1.3
2,747,829 + AO353_12485 0.67 -0.4
2,747,829 + AO353_12485 0.67 +0.0
2,747,829 + AO353_12485 0.67 -1.2
2,747,829 + AO353_12485 0.67 -0.1
2,747,829 + AO353_12485 0.67 -0.0
2,747,829 + AO353_12485 0.67 -0.5
2,747,829 + AO353_12485 0.67 +0.5
2,747,830 - AO353_12485 0.67 +0.1
2,747,830 - AO353_12485 0.67 -1.1
2,747,830 - AO353_12485 0.67 -0.4
2,747,840 - AO353_12485 0.69 -0.5
2,747,869 - AO353_12485 0.74 -1.2
2,747,869 - AO353_12485 0.74 -0.9
2,747,869 - AO353_12485 0.74 +0.2
2,748,000 + +1.1
2,748,001 - +0.1
2,748,006 + +0.4
2,748,007 - -0.4
2,748,119 + AO353_12490 0.17 +0.2
2,748,119 + AO353_12490 0.17 -0.7
2,748,119 + AO353_12490 0.17 +1.1
2,748,119 + AO353_12490 0.17 -0.8
2,748,119 + AO353_12490 0.17 +0.2
2,748,119 + AO353_12490 0.17 +0.4
2,748,119 + AO353_12490 0.17 +0.5
2,748,119 + AO353_12490 0.17 +0.6
2,748,119 + AO353_12490 0.17 +1.2
2,748,120 - AO353_12490 0.17 +1.2
2,748,120 - AO353_12490 0.17 +0.8
2,748,120 - AO353_12490 0.17 -1.0
2,748,120 - AO353_12490 0.17 -0.3
2,748,120 - AO353_12490 0.17 -0.7
2,748,120 - AO353_12490 0.17 -0.9
2,748,120 - AO353_12490 0.17 +0.6
2,748,120 - AO353_12490 0.17 -0.1
2,748,120 - AO353_12490 0.17 +0.3
2,748,120 - AO353_12490 0.17 -0.5
2,748,197 + AO353_12490 0.32 +1.8
2,748,197 + AO353_12490 0.32 -1.5
2,748,198 - AO353_12490 0.32 +0.2
2,748,198 - AO353_12490 0.32 -0.6
2,748,198 - AO353_12490 0.32 +0.3
2,748,198 - AO353_12490 0.32 -1.3
2,748,308 + AO353_12490 0.53 +1.8
2,748,309 - AO353_12490 0.53 +0.3
2,748,309 - AO353_12490 0.53 +0.5
2,748,309 - AO353_12490 0.53 -1.5
2,748,309 - AO353_12490 0.53 -0.9
2,748,309 - AO353_12490 0.53 -0.4
2,748,353 - AO353_12490 0.61 -0.2

Or see this region's nucleotide sequence