Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12335

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12325 and AO353_12330 overlap by 8 nucleotidesAO353_12330 and AO353_12335 are separated by 154 nucleotidesAO353_12335 and AO353_12340 are separated by 231 nucleotidesAO353_12340 and AO353_12345 overlap by 4 nucleotides AO353_12325: AO353_12325 - ABC transporter permease, at 2,713,639 to 2,714,598 _12325 AO353_12330: AO353_12330 - peptide ABC transporter ATP-binding protein, at 2,714,591 to 2,715,325 _12330 AO353_12335: AO353_12335 - chemotaxis protein, at 2,715,480 to 2,717,396 _12335 AO353_12340: AO353_12340 - 16S rRNA methyltransferase, at 2,717,628 to 2,718,335 _12340 AO353_12345: AO353_12345 - twin-arginine protein translocation system subunit TatC, at 2,718,332 to 2,719,126 _12345 Position (kb) 2715 2716 2717 2718Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2714.527 kb on + strandat 2714.527 kb on + strandat 2714.527 kb on + strandat 2714.528 kb on - strandat 2714.528 kb on - strandat 2714.528 kb on - strandat 2714.528 kb on - strandat 2715.067 kb on + strand, within AO353_12330at 2715.067 kb on + strand, within AO353_12330at 2715.067 kb on + strand, within AO353_12330at 2715.068 kb on - strand, within AO353_12330at 2715.068 kb on - strand, within AO353_12330at 2715.068 kb on - strand, within AO353_12330at 2715.073 kb on + strand, within AO353_12330at 2715.073 kb on + strand, within AO353_12330at 2715.073 kb on + strand, within AO353_12330at 2715.073 kb on + strand, within AO353_12330at 2715.073 kb on + strand, within AO353_12330at 2715.073 kb on + strand, within AO353_12330at 2715.073 kb on + strand, within AO353_12330at 2715.073 kb on + strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.074 kb on - strand, within AO353_12330at 2715.323 kb on + strandat 2715.324 kb on - strandat 2715.369 kb on + strandat 2715.369 kb on + strandat 2715.377 kb on + strandat 2715.377 kb on + strandat 2715.377 kb on + strandat 2715.377 kb on + strandat 2715.377 kb on + strandat 2715.377 kb on + strandat 2715.377 kb on + strandat 2715.378 kb on + strandat 2715.378 kb on - strandat 2715.378 kb on - strandat 2715.378 kb on - strandat 2715.378 kb on - strandat 2715.378 kb on - strandat 2715.378 kb on - strandat 2715.378 kb on - strandat 2715.414 kb on + strandat 2715.414 kb on + strandat 2715.414 kb on + strandat 2715.414 kb on + strandat 2715.415 kb on - strandat 2715.467 kb on + strandat 2715.467 kb on + strandat 2715.467 kb on + strandat 2716.439 kb on + strand, within AO353_12335at 2716.439 kb on + strand, within AO353_12335at 2716.440 kb on - strand, within AO353_12335at 2716.440 kb on - strand, within AO353_12335at 2716.771 kb on + strand, within AO353_12335at 2716.771 kb on + strand, within AO353_12335at 2716.771 kb on + strand, within AO353_12335at 2716.771 kb on + strand, within AO353_12335at 2716.772 kb on - strand, within AO353_12335at 2716.772 kb on - strand, within AO353_12335at 2716.772 kb on - strand, within AO353_12335at 2716.772 kb on - strand, within AO353_12335at 2716.831 kb on + strand, within AO353_12335at 2716.831 kb on + strand, within AO353_12335at 2716.831 kb on + strand, within AO353_12335at 2716.831 kb on + strand, within AO353_12335at 2716.832 kb on - strand, within AO353_12335at 2716.832 kb on - strand, within AO353_12335at 2716.832 kb on - strand, within AO353_12335at 2716.832 kb on - strand, within AO353_12335at 2716.832 kb on - strand, within AO353_12335at 2716.832 kb on - strand, within AO353_12335at 2716.837 kb on + strand, within AO353_12335at 2716.837 kb on + strand, within AO353_12335at 2717.028 kb on - strand, within AO353_12335at 2717.041 kb on + strand, within AO353_12335at 2717.041 kb on + strand, within AO353_12335at 2717.041 kb on + strand, within AO353_12335at 2717.041 kb on + strand, within AO353_12335at 2717.041 kb on + strand, within AO353_12335at 2717.041 kb on + strand, within AO353_12335at 2717.041 kb on + strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.042 kb on - strand, within AO353_12335at 2717.188 kb on + strand, within AO353_12335at 2717.188 kb on + strand, within AO353_12335at 2717.189 kb on - strand, within AO353_12335at 2717.189 kb on - strand, within AO353_12335at 2717.189 kb on - strand, within AO353_12335at 2717.204 kb on + strand, within AO353_12335at 2717.205 kb on - strandat 2717.205 kb on - strandat 2717.205 kb on - strandat 2717.240 kb on + strandat 2717.240 kb on + strandat 2717.240 kb on + strandat 2717.240 kb on + strandat 2717.241 kb on - strandat 2717.241 kb on - strandat 2717.241 kb on - strandat 2717.241 kb on - strandat 2717.243 kb on - strandat 2717.392 kb on + strandat 2717.392 kb on + strandat 2717.393 kb on - strandat 2717.393 kb on - strandat 2717.393 kb on - strandat 2717.393 kb on - strandat 2717.393 kb on - strandat 2717.393 kb on - strandat 2717.393 kb on - strandat 2717.411 kb on - strandat 2717.411 kb on - strandat 2717.421 kb on + strandat 2717.421 kb on + strandat 2717.421 kb on + strandat 2717.422 kb on - strandat 2717.422 kb on - strandat 2717.422 kb on - strandat 2717.431 kb on + strandat 2717.431 kb on + strandat 2717.431 kb on + strandat 2717.431 kb on + strandat 2717.431 kb on + strandat 2717.431 kb on + strandat 2717.431 kb on + strandat 2717.431 kb on + strandat 2717.432 kb on - strandat 2717.432 kb on - strandat 2717.432 kb on - strandat 2717.432 kb on - strandat 2717.432 kb on - strandat 2717.433 kb on + strandat 2717.433 kb on + strandat 2717.433 kb on + strandat 2717.433 kb on + strandat 2717.434 kb on - strandat 2717.434 kb on - strandat 2717.434 kb on - strandat 2717.443 kb on - strandat 2717.466 kb on + strandat 2717.466 kb on + strandat 2717.466 kb on + strandat 2717.466 kb on + strandat 2717.466 kb on + strandat 2717.541 kb on + strandat 2717.541 kb on + strandat 2717.541 kb on + strandat 2717.630 kb on - strandat 2717.630 kb on - strandat 2717.630 kb on - strandat 2717.735 kb on - strand, within AO353_12340

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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2,714,527 + -0.5
2,714,527 + +0.2
2,714,527 + -0.1
2,714,528 - +0.4
2,714,528 - +0.2
2,714,528 - -0.3
2,714,528 - -0.4
2,715,067 + AO353_12330 0.65 -0.1
2,715,067 + AO353_12330 0.65 -0.1
2,715,067 + AO353_12330 0.65 -0.8
2,715,068 - AO353_12330 0.65 -0.3
2,715,068 - AO353_12330 0.65 -0.0
2,715,068 - AO353_12330 0.65 -0.3
2,715,073 + AO353_12330 0.66 -1.5
2,715,073 + AO353_12330 0.66 -1.4
2,715,073 + AO353_12330 0.66 +0.7
2,715,073 + AO353_12330 0.66 +0.1
2,715,073 + AO353_12330 0.66 -1.0
2,715,073 + AO353_12330 0.66 +0.8
2,715,073 + AO353_12330 0.66 +0.9
2,715,073 + AO353_12330 0.66 -0.7
2,715,074 - AO353_12330 0.66 -0.1
2,715,074 - AO353_12330 0.66 +0.5
2,715,074 - AO353_12330 0.66 +1.8
2,715,074 - AO353_12330 0.66 -1.7
2,715,074 - AO353_12330 0.66 +0.2
2,715,074 - AO353_12330 0.66 -0.9
2,715,074 - AO353_12330 0.66 +0.7
2,715,074 - AO353_12330 0.66 +0.2
2,715,074 - AO353_12330 0.66 +0.2
2,715,323 + -1.4
2,715,324 - -0.5
2,715,369 + -0.8
2,715,369 + +1.3
2,715,377 + +0.4
2,715,377 + -0.2
2,715,377 + +0.9
2,715,377 + +0.0
2,715,377 + -0.8
2,715,377 + -0.7
2,715,377 + +1.6
2,715,378 + -0.3
2,715,378 - -0.9
2,715,378 - -0.8
2,715,378 - -1.0
2,715,378 - -1.2
2,715,378 - +1.1
2,715,378 - +1.4
2,715,378 - -0.1
2,715,414 + +1.2
2,715,414 + +0.6
2,715,414 + +0.2
2,715,414 + +2.5
2,715,415 - -0.5
2,715,467 + +0.6
2,715,467 + -2.1
2,715,467 + +0.2
2,716,439 + AO353_12335 0.50 -1.4
2,716,439 + AO353_12335 0.50 +0.3
2,716,440 - AO353_12335 0.50 -0.5
2,716,440 - AO353_12335 0.50 +0.8
2,716,771 + AO353_12335 0.67 +0.9
2,716,771 + AO353_12335 0.67 +0.8
2,716,771 + AO353_12335 0.67 -0.1
2,716,771 + AO353_12335 0.67 +1.0
2,716,772 - AO353_12335 0.67 -0.7
2,716,772 - AO353_12335 0.67 -0.1
2,716,772 - AO353_12335 0.67 +0.2
2,716,772 - AO353_12335 0.67 +0.2
2,716,831 + AO353_12335 0.70 +0.7
2,716,831 + AO353_12335 0.70 +0.5
2,716,831 + AO353_12335 0.70 +0.0
2,716,831 + AO353_12335 0.70 +0.2
2,716,832 - AO353_12335 0.71 -0.5
2,716,832 - AO353_12335 0.71 -2.2
2,716,832 - AO353_12335 0.71 +0.5
2,716,832 - AO353_12335 0.71 -0.0
2,716,832 - AO353_12335 0.71 +1.4
2,716,832 - AO353_12335 0.71 +2.5
2,716,837 + AO353_12335 0.71 -1.0
2,716,837 + AO353_12335 0.71 -0.5
2,717,028 - AO353_12335 0.81 +0.6
2,717,041 + AO353_12335 0.81 +1.4
2,717,041 + AO353_12335 0.81 +1.6
2,717,041 + AO353_12335 0.81 -0.5
2,717,041 + AO353_12335 0.81 +0.1
2,717,041 + AO353_12335 0.81 +0.6
2,717,041 + AO353_12335 0.81 -1.2
2,717,041 + AO353_12335 0.81 -0.1
2,717,042 - AO353_12335 0.81 -0.1
2,717,042 - AO353_12335 0.81 +0.7
2,717,042 - AO353_12335 0.81 +0.7
2,717,042 - AO353_12335 0.81 +0.4
2,717,042 - AO353_12335 0.81 +0.6
2,717,042 - AO353_12335 0.81 -1.0
2,717,042 - AO353_12335 0.81 +0.7
2,717,042 - AO353_12335 0.81 -0.4
2,717,042 - AO353_12335 0.81 +0.6
2,717,188 + AO353_12335 0.89 +1.4
2,717,188 + AO353_12335 0.89 +1.2
2,717,189 - AO353_12335 0.89 +1.0
2,717,189 - AO353_12335 0.89 +0.6
2,717,189 - AO353_12335 0.89 +0.7
2,717,204 + AO353_12335 0.90 +2.8
2,717,205 - -0.2
2,717,205 - +1.5
2,717,205 - -0.5
2,717,240 + -0.9
2,717,240 + -2.1
2,717,240 + -1.2
2,717,240 + -0.3
2,717,241 - +0.1
2,717,241 - -0.7
2,717,241 - -1.3
2,717,241 - +0.0
2,717,243 - +0.1
2,717,392 + +1.5
2,717,392 + +0.2
2,717,393 - -0.5
2,717,393 - -2.1
2,717,393 - +0.8
2,717,393 - +0.3
2,717,393 - -2.1
2,717,393 - +0.0
2,717,393 - +0.1
2,717,411 - -0.9
2,717,411 - -0.5
2,717,421 + +0.8
2,717,421 + -0.4
2,717,421 + -0.3
2,717,422 - -0.8
2,717,422 - -0.7
2,717,422 - -1.0
2,717,431 + +0.8
2,717,431 + -0.5
2,717,431 + -0.2
2,717,431 + -1.2
2,717,431 + -0.9
2,717,431 + +0.5
2,717,431 + -0.4
2,717,431 + +0.0
2,717,432 - +0.0
2,717,432 - +0.5
2,717,432 - +0.5
2,717,432 - -1.1
2,717,432 - +0.6
2,717,433 + -0.4
2,717,433 + -0.1
2,717,433 + -0.4
2,717,433 + -2.4
2,717,434 - -0.7
2,717,434 - -0.2
2,717,434 - -0.8
2,717,443 - -0.2
2,717,466 + +0.0
2,717,466 + -0.4
2,717,466 + -0.6
2,717,466 + -0.4
2,717,466 + -0.7
2,717,541 + +0.2
2,717,541 + +1.8
2,717,541 + -1.2
2,717,630 - -1.7
2,717,630 - -0.8
2,717,630 - -1.3
2,717,735 - AO353_12340 0.15 +1.0

Or see this region's nucleotide sequence