Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12020

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12005 and AO353_12010 are separated by 69 nucleotidesAO353_12010 and AO353_12015 overlap by 1 nucleotidesAO353_12015 and AO353_12020 are separated by 190 nucleotidesAO353_12020 and AO353_12025 are separated by 34 nucleotides AO353_12005: AO353_12005 - GABA permease, at 2,642,728 to 2,644,119 _12005 AO353_12010: AO353_12010 - plasmid maintenance protein, at 2,644,189 to 2,644,596 _12010 AO353_12015: AO353_12015 - antitoxin, at 2,644,596 to 2,644,826 _12015 AO353_12020: AO353_12020 - hypothetical protein, at 2,645,017 to 2,645,469 _12020 AO353_12025: AO353_12025 - alpha/beta hydrolase, at 2,645,504 to 2,646,496 _12025 Position (kb) 2645 2646Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2644.201 kb on + strandat 2644.201 kb on + strandat 2644.202 kb on - strandat 2644.214 kb on - strandat 2644.251 kb on + strand, within AO353_12010at 2644.251 kb on + strand, within AO353_12010at 2644.251 kb on + strand, within AO353_12010at 2644.252 kb on - strand, within AO353_12010at 2644.252 kb on - strand, within AO353_12010at 2644.307 kb on + strand, within AO353_12010at 2644.307 kb on + strand, within AO353_12010at 2644.308 kb on - strand, within AO353_12010at 2644.308 kb on - strand, within AO353_12010at 2644.308 kb on - strand, within AO353_12010at 2644.376 kb on + strand, within AO353_12010at 2644.376 kb on + strand, within AO353_12010at 2644.405 kb on + strand, within AO353_12010at 2644.405 kb on + strand, within AO353_12010at 2644.405 kb on + strand, within AO353_12010at 2644.406 kb on - strand, within AO353_12010at 2644.406 kb on - strand, within AO353_12010at 2644.463 kb on + strand, within AO353_12010at 2644.463 kb on + strand, within AO353_12010at 2644.464 kb on - strand, within AO353_12010at 2644.464 kb on - strand, within AO353_12010at 2644.492 kb on + strand, within AO353_12010at 2644.493 kb on - strand, within AO353_12010at 2644.493 kb on - strand, within AO353_12010at 2644.493 kb on - strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.494 kb on + strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.495 kb on - strand, within AO353_12010at 2644.531 kb on + strand, within AO353_12010at 2644.532 kb on - strand, within AO353_12010at 2644.532 kb on - strand, within AO353_12010at 2644.557 kb on + strandat 2644.557 kb on + strandat 2644.558 kb on - strandat 2644.586 kb on + strandat 2644.586 kb on + strandat 2644.586 kb on + strandat 2644.586 kb on + strandat 2644.586 kb on + strandat 2644.586 kb on + strandat 2644.586 kb on + strandat 2644.587 kb on - strandat 2644.587 kb on - strandat 2644.587 kb on - strandat 2644.587 kb on - strandat 2644.587 kb on - strandat 2644.587 kb on - strandat 2644.587 kb on - strandat 2644.587 kb on - strandat 2644.587 kb on - strandat 2644.643 kb on + strand, within AO353_12015at 2644.643 kb on + strand, within AO353_12015at 2644.728 kb on + strand, within AO353_12015at 2644.728 kb on + strand, within AO353_12015at 2644.728 kb on + strand, within AO353_12015at 2644.728 kb on + strand, within AO353_12015at 2644.729 kb on - strand, within AO353_12015at 2644.854 kb on + strandat 2644.854 kb on + strandat 2644.854 kb on + strandat 2644.854 kb on + strandat 2644.855 kb on - strandat 2644.855 kb on - strandat 2644.867 kb on + strandat 2644.868 kb on - strandat 2644.868 kb on - strandat 2644.868 kb on - strandat 2644.868 kb on - strandat 2644.898 kb on + strandat 2644.899 kb on - strandat 2644.919 kb on + strandat 2644.920 kb on - strandat 2645.336 kb on + strand, within AO353_12020at 2645.336 kb on + strand, within AO353_12020at 2645.337 kb on - strand, within AO353_12020at 2645.337 kb on - strand, within AO353_12020at 2645.403 kb on + strand, within AO353_12020at 2645.471 kb on + strandat 2645.471 kb on + strandat 2645.471 kb on + strandat 2645.471 kb on + strandat 2645.472 kb on - strandat 2645.472 kb on - strandat 2645.472 kb on - strandat 2645.472 kb on - strandat 2645.591 kb on + strandat 2645.592 kb on - strandat 2645.592 kb on - strandat 2645.604 kb on + strand, within AO353_12025at 2645.605 kb on - strand, within AO353_12025at 2645.698 kb on - strand, within AO353_12025at 2645.698 kb on - strand, within AO353_12025at 2645.698 kb on - strand, within AO353_12025at 2645.755 kb on + strand, within AO353_12025at 2645.884 kb on + strand, within AO353_12025at 2645.884 kb on + strand, within AO353_12025at 2645.884 kb on + strand, within AO353_12025at 2645.884 kb on + strand, within AO353_12025at 2645.885 kb on - strand, within AO353_12025at 2645.885 kb on - strand, within AO353_12025at 2645.885 kb on - strand, within AO353_12025at 2645.885 kb on - strand, within AO353_12025at 2645.885 kb on - strand, within AO353_12025at 2645.885 kb on - strand, within AO353_12025at 2645.885 kb on - strand, within AO353_12025at 2645.920 kb on - strand, within AO353_12025at 2645.926 kb on - strand, within AO353_12025at 2645.926 kb on - strand, within AO353_12025at 2645.926 kb on - strand, within AO353_12025at 2645.994 kb on + strand, within AO353_12025at 2645.994 kb on + strand, within AO353_12025at 2645.995 kb on - strand, within AO353_12025at 2645.995 kb on - strand, within AO353_12025at 2645.995 kb on - strand, within AO353_12025at 2645.995 kb on - strand, within AO353_12025at 2646.088 kb on + strand, within AO353_12025at 2646.088 kb on + strand, within AO353_12025at 2646.088 kb on + strand, within AO353_12025at 2646.088 kb on + strand, within AO353_12025at 2646.088 kb on + strand, within AO353_12025at 2646.089 kb on - strand, within AO353_12025at 2646.089 kb on - strand, within AO353_12025at 2646.089 kb on - strand, within AO353_12025at 2646.089 kb on - strand, within AO353_12025at 2646.089 kb on - strand, within AO353_12025at 2646.089 kb on - strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.098 kb on + strand, within AO353_12025at 2646.099 kb on - strand, within AO353_12025at 2646.099 kb on - strand, within AO353_12025at 2646.099 kb on - strand, within AO353_12025at 2646.237 kb on + strand, within AO353_12025at 2646.237 kb on + strand, within AO353_12025at 2646.238 kb on - strand, within AO353_12025at 2646.238 kb on - strand, within AO353_12025at 2646.238 kb on - strand, within AO353_12025at 2646.238 kb on - strand, within AO353_12025at 2646.270 kb on + strand, within AO353_12025at 2646.271 kb on - strand, within AO353_12025at 2646.271 kb on - strand, within AO353_12025at 2646.271 kb on - strand, within AO353_12025at 2646.288 kb on + strand, within AO353_12025at 2646.288 kb on + strand, within AO353_12025at 2646.289 kb on - strand, within AO353_12025at 2646.289 kb on - strand, within AO353_12025at 2646.289 kb on - strand, within AO353_12025at 2646.289 kb on - strand, within AO353_12025at 2646.289 kb on - strand, within AO353_12025at 2646.289 kb on - strand, within AO353_12025at 2646.289 kb on - strand, within AO353_12025at 2646.343 kb on + strand, within AO353_12025at 2646.343 kb on + strand, within AO353_12025at 2646.344 kb on - strand, within AO353_12025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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2,644,201 + -0.6
2,644,201 + +0.3
2,644,202 - -1.0
2,644,214 - -1.1
2,644,251 + AO353_12010 0.15 -1.0
2,644,251 + AO353_12010 0.15 +1.7
2,644,251 + AO353_12010 0.15 +0.0
2,644,252 - AO353_12010 0.15 -0.7
2,644,252 - AO353_12010 0.15 +1.3
2,644,307 + AO353_12010 0.29 -1.5
2,644,307 + AO353_12010 0.29 -1.0
2,644,308 - AO353_12010 0.29 -0.8
2,644,308 - AO353_12010 0.29 +0.4
2,644,308 - AO353_12010 0.29 -0.4
2,644,376 + AO353_12010 0.46 -1.1
2,644,376 + AO353_12010 0.46 -0.5
2,644,405 + AO353_12010 0.53 +0.5
2,644,405 + AO353_12010 0.53 -1.1
2,644,405 + AO353_12010 0.53 +1.9
2,644,406 - AO353_12010 0.53 -0.1
2,644,406 - AO353_12010 0.53 -0.3
2,644,463 + AO353_12010 0.67 -0.1
2,644,463 + AO353_12010 0.67 -3.3
2,644,464 - AO353_12010 0.67 -0.3
2,644,464 - AO353_12010 0.67 +1.0
2,644,492 + AO353_12010 0.74 +0.8
2,644,493 - AO353_12010 0.75 +0.0
2,644,493 - AO353_12010 0.75 +1.3
2,644,493 - AO353_12010 0.75 -1.8
2,644,494 + AO353_12010 0.75 -1.8
2,644,494 + AO353_12010 0.75 +0.9
2,644,494 + AO353_12010 0.75 +1.0
2,644,494 + AO353_12010 0.75 +0.4
2,644,494 + AO353_12010 0.75 -1.0
2,644,494 + AO353_12010 0.75 +0.5
2,644,494 + AO353_12010 0.75 +0.0
2,644,494 + AO353_12010 0.75 +0.1
2,644,494 + AO353_12010 0.75 +0.6
2,644,494 + AO353_12010 0.75 +1.1
2,644,494 + AO353_12010 0.75 -0.4
2,644,494 + AO353_12010 0.75 +0.5
2,644,494 + AO353_12010 0.75 +0.4
2,644,494 + AO353_12010 0.75 +1.4
2,644,495 - AO353_12010 0.75 +0.0
2,644,495 - AO353_12010 0.75 -0.5
2,644,495 - AO353_12010 0.75 +0.3
2,644,495 - AO353_12010 0.75 +1.1
2,644,495 - AO353_12010 0.75 -0.1
2,644,495 - AO353_12010 0.75 +0.9
2,644,495 - AO353_12010 0.75 +0.8
2,644,495 - AO353_12010 0.75 -1.4
2,644,495 - AO353_12010 0.75 -0.3
2,644,495 - AO353_12010 0.75 +1.7
2,644,495 - AO353_12010 0.75 +1.9
2,644,495 - AO353_12010 0.75 -0.9
2,644,495 - AO353_12010 0.75 +0.2
2,644,495 - AO353_12010 0.75 -0.0
2,644,495 - AO353_12010 0.75 -0.1
2,644,495 - AO353_12010 0.75 -1.0
2,644,495 - AO353_12010 0.75 -0.8
2,644,531 + AO353_12010 0.84 +0.7
2,644,532 - AO353_12010 0.84 -0.3
2,644,532 - AO353_12010 0.84 +0.9
2,644,557 + -1.4
2,644,557 + -0.1
2,644,558 - -3.1
2,644,586 + +1.0
2,644,586 + +0.9
2,644,586 + -0.6
2,644,586 + -1.1
2,644,586 + +0.1
2,644,586 + -0.4
2,644,586 + -1.3
2,644,587 - +0.3
2,644,587 - -0.9
2,644,587 - +0.6
2,644,587 - +1.1
2,644,587 - -0.3
2,644,587 - -0.3
2,644,587 - -0.7
2,644,587 - +0.7
2,644,587 - +1.2
2,644,643 + AO353_12015 0.20 -0.8
2,644,643 + AO353_12015 0.20 +0.4
2,644,728 + AO353_12015 0.57 +0.9
2,644,728 + AO353_12015 0.57 -1.1
2,644,728 + AO353_12015 0.57 +0.3
2,644,728 + AO353_12015 0.57 -0.4
2,644,729 - AO353_12015 0.58 -0.2
2,644,854 + -0.6
2,644,854 + -1.2
2,644,854 + +1.3
2,644,854 + +0.9
2,644,855 - -0.1
2,644,855 - -0.0
2,644,867 + -0.8
2,644,868 - +0.7
2,644,868 - +0.5
2,644,868 - -2.8
2,644,868 - -0.3
2,644,898 + -1.6
2,644,899 - +0.5
2,644,919 + +0.1
2,644,920 - +0.1
2,645,336 + AO353_12020 0.70 +0.9
2,645,336 + AO353_12020 0.70 +0.9
2,645,337 - AO353_12020 0.71 +1.0
2,645,337 - AO353_12020 0.71 -1.2
2,645,403 + AO353_12020 0.85 +0.3
2,645,471 + +1.4
2,645,471 + -0.3
2,645,471 + +0.9
2,645,471 + -0.0
2,645,472 - -0.3
2,645,472 - +2.4
2,645,472 - +0.4
2,645,472 - -0.5
2,645,591 + -0.5
2,645,592 - +0.7
2,645,592 - +1.2
2,645,604 + AO353_12025 0.10 -0.4
2,645,605 - AO353_12025 0.10 +1.0
2,645,698 - AO353_12025 0.20 -0.2
2,645,698 - AO353_12025 0.20 +0.2
2,645,698 - AO353_12025 0.20 +1.0
2,645,755 + AO353_12025 0.25 +1.1
2,645,884 + AO353_12025 0.38 -1.1
2,645,884 + AO353_12025 0.38 -2.2
2,645,884 + AO353_12025 0.38 -0.1
2,645,884 + AO353_12025 0.38 -0.8
2,645,885 - AO353_12025 0.38 +0.5
2,645,885 - AO353_12025 0.38 -0.3
2,645,885 - AO353_12025 0.38 +0.4
2,645,885 - AO353_12025 0.38 +1.0
2,645,885 - AO353_12025 0.38 -0.9
2,645,885 - AO353_12025 0.38 +0.5
2,645,885 - AO353_12025 0.38 -1.0
2,645,920 - AO353_12025 0.42 +0.9
2,645,926 - AO353_12025 0.42 +0.5
2,645,926 - AO353_12025 0.42 +1.3
2,645,926 - AO353_12025 0.42 +0.8
2,645,994 + AO353_12025 0.49 +0.5
2,645,994 + AO353_12025 0.49 -0.7
2,645,995 - AO353_12025 0.49 +1.9
2,645,995 - AO353_12025 0.49 -0.1
2,645,995 - AO353_12025 0.49 -1.0
2,645,995 - AO353_12025 0.49 -0.6
2,646,088 + AO353_12025 0.59 +1.5
2,646,088 + AO353_12025 0.59 +1.9
2,646,088 + AO353_12025 0.59 +0.3
2,646,088 + AO353_12025 0.59 +0.6
2,646,088 + AO353_12025 0.59 +0.4
2,646,089 - AO353_12025 0.59 +1.9
2,646,089 - AO353_12025 0.59 -1.7
2,646,089 - AO353_12025 0.59 -0.5
2,646,089 - AO353_12025 0.59 +0.2
2,646,089 - AO353_12025 0.59 -1.0
2,646,089 - AO353_12025 0.59 -0.4
2,646,098 + AO353_12025 0.60 -0.6
2,646,098 + AO353_12025 0.60 +1.1
2,646,098 + AO353_12025 0.60 +0.9
2,646,098 + AO353_12025 0.60 +1.3
2,646,098 + AO353_12025 0.60 +0.3
2,646,098 + AO353_12025 0.60 -0.6
2,646,098 + AO353_12025 0.60 +0.3
2,646,098 + AO353_12025 0.60 -1.2
2,646,098 + AO353_12025 0.60 -0.3
2,646,099 - AO353_12025 0.60 +0.1
2,646,099 - AO353_12025 0.60 +0.5
2,646,099 - AO353_12025 0.60 +1.4
2,646,237 + AO353_12025 0.74 +0.0
2,646,237 + AO353_12025 0.74 -0.8
2,646,238 - AO353_12025 0.74 +1.9
2,646,238 - AO353_12025 0.74 +0.6
2,646,238 - AO353_12025 0.74 +0.3
2,646,238 - AO353_12025 0.74 +0.0
2,646,270 + AO353_12025 0.77 +0.4
2,646,271 - AO353_12025 0.77 +1.3
2,646,271 - AO353_12025 0.77 -0.6
2,646,271 - AO353_12025 0.77 +1.2
2,646,288 + AO353_12025 0.79 +0.4
2,646,288 + AO353_12025 0.79 -0.2
2,646,289 - AO353_12025 0.79 -1.2
2,646,289 - AO353_12025 0.79 +0.9
2,646,289 - AO353_12025 0.79 +0.2
2,646,289 - AO353_12025 0.79 -0.3
2,646,289 - AO353_12025 0.79 -2.2
2,646,289 - AO353_12025 0.79 -1.2
2,646,289 - AO353_12025 0.79 +1.4
2,646,343 + AO353_12025 0.84 +1.1
2,646,343 + AO353_12025 0.84 -0.7
2,646,344 - AO353_12025 0.85 +0.5

Or see this region's nucleotide sequence