Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09590 and AO353_09595 overlap by 4 nucleotides AO353_09595 and AO353_09600 are separated by 67 nucleotides AO353_09600 and AO353_09605 overlap by 7 nucleotides AO353_09605 and AO353_09610 overlap by 4 nucleotides
AO353_09590: AO353_09590 - hypothetical protein, at 2,105,047 to 2,105,505
_09590
AO353_09595: AO353_09595 - hypothetical protein, at 2,105,502 to 2,105,942
_09595
AO353_09600: AO353_09600 - hypothetical protein, at 2,106,010 to 2,106,450
_09600
AO353_09605: AO353_09605 - type VI secretion system lysozyme, at 2,106,444 to 2,106,956
_09605
AO353_09610: AO353_09610 - type VI secretion system protein ImpG, at 2,106,953 to 2,108,812
_09610
Position (kb)
2106
2107 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2105.064 kb on + strand at 2105.064 kb on + strand at 2105.067 kb on + strand at 2105.067 kb on + strand at 2105.067 kb on + strand at 2105.067 kb on + strand at 2105.067 kb on + strand at 2105.068 kb on - strand at 2105.083 kb on + strand at 2105.083 kb on + strand at 2105.083 kb on + strand at 2105.083 kb on + strand at 2105.083 kb on + strand at 2105.100 kb on + strand, within AO353_09590 at 2105.101 kb on - strand, within AO353_09590 at 2105.157 kb on + strand, within AO353_09590 at 2105.157 kb on + strand, within AO353_09590 at 2105.158 kb on - strand, within AO353_09590 at 2105.158 kb on - strand, within AO353_09590 at 2105.205 kb on + strand, within AO353_09590 at 2105.205 kb on + strand, within AO353_09590 at 2105.205 kb on + strand, within AO353_09590 at 2105.205 kb on + strand, within AO353_09590 at 2105.205 kb on + strand, within AO353_09590 at 2105.205 kb on + strand, within AO353_09590 at 2105.205 kb on + strand, within AO353_09590 at 2105.205 kb on + strand, within AO353_09590 at 2105.206 kb on - strand, within AO353_09590 at 2105.206 kb on - strand, within AO353_09590 at 2105.206 kb on - strand, within AO353_09590 at 2105.206 kb on - strand, within AO353_09590 at 2105.206 kb on - strand, within AO353_09590 at 2105.206 kb on - strand, within AO353_09590 at 2105.206 kb on - strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.209 kb on + strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.210 kb on - strand, within AO353_09590 at 2105.361 kb on + strand, within AO353_09590 at 2105.362 kb on - strand, within AO353_09590 at 2105.468 kb on - strand at 2105.527 kb on + strand at 2105.527 kb on + strand at 2105.542 kb on + strand at 2105.542 kb on + strand at 2105.542 kb on + strand at 2105.542 kb on + strand at 2105.543 kb on - strand at 2105.602 kb on + strand, within AO353_09595 at 2105.602 kb on + strand, within AO353_09595 at 2105.603 kb on - strand, within AO353_09595 at 2105.603 kb on - strand, within AO353_09595 at 2105.656 kb on + strand, within AO353_09595 at 2105.656 kb on + strand, within AO353_09595 at 2105.656 kb on + strand, within AO353_09595 at 2105.657 kb on - strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.785 kb on + strand, within AO353_09595 at 2105.786 kb on - strand, within AO353_09595 at 2105.786 kb on - strand, within AO353_09595 at 2105.786 kb on - strand, within AO353_09595 at 2105.786 kb on - strand, within AO353_09595 at 2105.786 kb on - strand, within AO353_09595 at 2105.786 kb on - strand, within AO353_09595 at 2105.826 kb on + strand, within AO353_09595 at 2105.826 kb on + strand, within AO353_09595 at 2105.919 kb on + strand at 2105.919 kb on + strand at 2105.919 kb on + strand at 2105.919 kb on + strand at 2105.919 kb on + strand at 2105.920 kb on - strand at 2105.920 kb on - strand at 2105.920 kb on - strand at 2105.920 kb on - strand at 2105.920 kb on - strand at 2105.920 kb on - strand at 2105.920 kb on - strand at 2105.940 kb on + strand at 2105.940 kb on + strand at 2105.941 kb on - strand at 2105.941 kb on - strand at 2105.941 kb on - strand at 2106.194 kb on + strand, within AO353_09600 at 2106.194 kb on + strand, within AO353_09600 at 2106.194 kb on + strand, within AO353_09600 at 2106.194 kb on + strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.195 kb on - strand, within AO353_09600 at 2106.387 kb on + strand, within AO353_09600 at 2106.387 kb on + strand, within AO353_09600 at 2106.387 kb on + strand, within AO353_09600 at 2106.388 kb on - strand, within AO353_09600 at 2106.388 kb on - strand, within AO353_09600 at 2106.653 kb on + strand, within AO353_09605 at 2106.780 kb on - strand, within AO353_09605 at 2106.977 kb on + strand at 2106.977 kb on + strand at 2106.977 kb on + strand at 2106.977 kb on + strand at 2106.977 kb on + strand at 2106.978 kb on - strand at 2106.978 kb on - strand at 2106.978 kb on - strand at 2106.978 kb on - strand at 2106.978 kb on - strand at 2106.978 kb on - strand at 2106.978 kb on - strand at 2106.978 kb on - strand at 2106.978 kb on - strand at 2107.031 kb on + strand at 2107.085 kb on + strand at 2107.085 kb on + strand at 2107.085 kb on + strand at 2107.085 kb on + strand at 2107.085 kb on + strand at 2107.086 kb on - strand at 2107.086 kb on - strand at 2107.086 kb on - strand at 2107.086 kb on - strand at 2107.086 kb on - strand at 2107.086 kb on - strand at 2107.086 kb on - strand at 2107.116 kb on - strand at 2107.116 kb on - strand at 2107.131 kb on + strand at 2107.131 kb on + strand at 2107.132 kb on - strand at 2107.199 kb on + strand, within AO353_09610 at 2107.199 kb on + strand, within AO353_09610 at 2107.200 kb on - strand, within AO353_09610 at 2107.394 kb on + strand, within AO353_09610
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 2,105,064 + -0.1 2,105,064 + +1.1 2,105,067 + +1.2 2,105,067 + -1.4 2,105,067 + +0.3 2,105,067 + -1.2 2,105,067 + +0.2 2,105,068 - -0.4 2,105,083 + +0.3 2,105,083 + +0.2 2,105,083 + +0.3 2,105,083 + +0.8 2,105,083 + +0.7 2,105,100 + AO353_09590 0.12 -0.7 2,105,101 - AO353_09590 0.12 +0.6 2,105,157 + AO353_09590 0.24 -0.5 2,105,157 + AO353_09590 0.24 +1.1 2,105,158 - AO353_09590 0.24 +1.5 2,105,158 - AO353_09590 0.24 +1.9 2,105,205 + AO353_09590 0.34 -0.0 2,105,205 + AO353_09590 0.34 +0.4 2,105,205 + AO353_09590 0.34 -0.6 2,105,205 + AO353_09590 0.34 +0.7 2,105,205 + AO353_09590 0.34 -0.4 2,105,205 + AO353_09590 0.34 +0.4 2,105,205 + AO353_09590 0.34 -2.4 2,105,205 + AO353_09590 0.34 +0.9 2,105,206 - AO353_09590 0.35 -0.5 2,105,206 - AO353_09590 0.35 +0.6 2,105,206 - AO353_09590 0.35 +0.4 2,105,206 - AO353_09590 0.35 +0.1 2,105,206 - AO353_09590 0.35 +0.1 2,105,206 - AO353_09590 0.35 +0.6 2,105,206 - AO353_09590 0.35 +0.9 2,105,209 + AO353_09590 0.35 +0.8 2,105,209 + AO353_09590 0.35 +1.4 2,105,209 + AO353_09590 0.35 +0.3 2,105,209 + AO353_09590 0.35 -2.4 2,105,209 + AO353_09590 0.35 +1.9 2,105,209 + AO353_09590 0.35 +0.8 2,105,209 + AO353_09590 0.35 +0.9 2,105,209 + AO353_09590 0.35 +0.9 2,105,209 + AO353_09590 0.35 +0.3 2,105,210 - AO353_09590 0.36 -0.8 2,105,210 - AO353_09590 0.36 -0.3 2,105,210 - AO353_09590 0.36 -0.8 2,105,210 - AO353_09590 0.36 -1.1 2,105,210 - AO353_09590 0.36 +0.5 2,105,210 - AO353_09590 0.36 +0.1 2,105,210 - AO353_09590 0.36 +0.0 2,105,210 - AO353_09590 0.36 +1.3 2,105,210 - AO353_09590 0.36 +0.9 2,105,210 - AO353_09590 0.36 -1.1 2,105,210 - AO353_09590 0.36 +0.3 2,105,361 + AO353_09590 0.68 +0.0 2,105,362 - AO353_09590 0.69 -2.2 2,105,468 - +1.0 2,105,527 + +1.5 2,105,527 + +1.2 2,105,542 + -1.7 2,105,542 + -0.1 2,105,542 + +0.7 2,105,542 + +0.7 2,105,543 - +0.1 2,105,602 + AO353_09595 0.23 +0.3 2,105,602 + AO353_09595 0.23 -0.3 2,105,603 - AO353_09595 0.23 +0.5 2,105,603 - AO353_09595 0.23 +0.6 2,105,656 + AO353_09595 0.35 -1.4 2,105,656 + AO353_09595 0.35 -0.4 2,105,656 + AO353_09595 0.35 -0.2 2,105,657 - AO353_09595 0.35 -1.0 2,105,785 + AO353_09595 0.64 -1.0 2,105,785 + AO353_09595 0.64 -1.0 2,105,785 + AO353_09595 0.64 +0.9 2,105,785 + AO353_09595 0.64 +0.9 2,105,785 + AO353_09595 0.64 -0.7 2,105,785 + AO353_09595 0.64 +1.5 2,105,785 + AO353_09595 0.64 +0.3 2,105,785 + AO353_09595 0.64 -0.6 2,105,785 + AO353_09595 0.64 +2.3 2,105,786 - AO353_09595 0.64 -0.5 2,105,786 - AO353_09595 0.64 +0.7 2,105,786 - AO353_09595 0.64 +0.1 2,105,786 - AO353_09595 0.64 +0.1 2,105,786 - AO353_09595 0.64 -0.3 2,105,786 - AO353_09595 0.64 -0.1 2,105,826 + AO353_09595 0.73 -0.1 2,105,826 + AO353_09595 0.73 +0.1 2,105,919 + -0.6 2,105,919 + -0.4 2,105,919 + +0.9 2,105,919 + -1.3 2,105,919 + -1.3 2,105,920 - +0.1 2,105,920 - +0.1 2,105,920 - -0.3 2,105,920 - -0.4 2,105,920 - +0.7 2,105,920 - +1.1 2,105,920 - -0.9 2,105,940 + -0.8 2,105,940 + -0.4 2,105,941 - -1.4 2,105,941 - -0.5 2,105,941 - -0.9 2,106,194 + AO353_09600 0.42 +0.7 2,106,194 + AO353_09600 0.42 -0.1 2,106,194 + AO353_09600 0.42 +1.0 2,106,194 + AO353_09600 0.42 -0.7 2,106,195 - AO353_09600 0.42 +1.3 2,106,195 - AO353_09600 0.42 -0.8 2,106,195 - AO353_09600 0.42 +1.4 2,106,195 - AO353_09600 0.42 +1.5 2,106,195 - AO353_09600 0.42 +1.2 2,106,195 - AO353_09600 0.42 -0.3 2,106,195 - AO353_09600 0.42 +1.9 2,106,195 - AO353_09600 0.42 -0.1 2,106,195 - AO353_09600 0.42 -1.4 2,106,195 - AO353_09600 0.42 +1.9 2,106,195 - AO353_09600 0.42 +0.7 2,106,195 - AO353_09600 0.42 -0.7 2,106,195 - AO353_09600 0.42 -1.7 2,106,195 - AO353_09600 0.42 +0.7 2,106,387 + AO353_09600 0.85 -0.9 2,106,387 + AO353_09600 0.85 +0.3 2,106,387 + AO353_09600 0.85 -0.0 2,106,388 - AO353_09600 0.86 +1.2 2,106,388 - AO353_09600 0.86 +0.9 2,106,653 + AO353_09605 0.41 -0.7 2,106,780 - AO353_09605 0.65 -1.0 2,106,977 + -0.7 2,106,977 + -0.1 2,106,977 + +0.2 2,106,977 + -0.4 2,106,977 + +0.0 2,106,978 - -0.5 2,106,978 - -0.3 2,106,978 - +0.9 2,106,978 - +2.9 2,106,978 - +0.1 2,106,978 - -0.1 2,106,978 - -0.0 2,106,978 - -0.1 2,106,978 - -0.1 2,107,031 + -0.9 2,107,085 + -1.2 2,107,085 + -0.4 2,107,085 + +0.6 2,107,085 + -0.1 2,107,085 + +0.7 2,107,086 - -0.3 2,107,086 - -0.1 2,107,086 - +1.6 2,107,086 - -0.9 2,107,086 - -0.4 2,107,086 - -0.9 2,107,086 - -0.9 2,107,116 - -0.6 2,107,116 - -0.9 2,107,131 + +0.2 2,107,131 + +0.3 2,107,132 - +1.9 2,107,199 + AO353_09610 0.13 +0.5 2,107,199 + AO353_09610 0.13 -0.3 2,107,200 - AO353_09610 0.13 -0.3 2,107,394 + AO353_09610 0.24 -0.1
Or see this region's nucleotide sequence