Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09600

Experiment: L-Arginine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_09590 and AO353_09595 overlap by 4 nucleotidesAO353_09595 and AO353_09600 are separated by 67 nucleotidesAO353_09600 and AO353_09605 overlap by 7 nucleotidesAO353_09605 and AO353_09610 overlap by 4 nucleotides AO353_09590: AO353_09590 - hypothetical protein, at 2,105,047 to 2,105,505 _09590 AO353_09595: AO353_09595 - hypothetical protein, at 2,105,502 to 2,105,942 _09595 AO353_09600: AO353_09600 - hypothetical protein, at 2,106,010 to 2,106,450 _09600 AO353_09605: AO353_09605 - type VI secretion system lysozyme, at 2,106,444 to 2,106,956 _09605 AO353_09610: AO353_09610 - type VI secretion system protein ImpG, at 2,106,953 to 2,108,812 _09610 Position (kb) 2106 2107Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2105.064 kb on + strandat 2105.064 kb on + strandat 2105.067 kb on + strandat 2105.067 kb on + strandat 2105.067 kb on + strandat 2105.067 kb on + strandat 2105.067 kb on + strandat 2105.068 kb on - strandat 2105.083 kb on + strandat 2105.083 kb on + strandat 2105.083 kb on + strandat 2105.083 kb on + strandat 2105.083 kb on + strandat 2105.100 kb on + strand, within AO353_09590at 2105.101 kb on - strand, within AO353_09590at 2105.157 kb on + strand, within AO353_09590at 2105.157 kb on + strand, within AO353_09590at 2105.158 kb on - strand, within AO353_09590at 2105.158 kb on - strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.205 kb on + strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.206 kb on - strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.209 kb on + strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.210 kb on - strand, within AO353_09590at 2105.361 kb on + strand, within AO353_09590at 2105.362 kb on - strand, within AO353_09590at 2105.468 kb on - strandat 2105.527 kb on + strandat 2105.527 kb on + strandat 2105.542 kb on + strandat 2105.542 kb on + strandat 2105.542 kb on + strandat 2105.542 kb on + strandat 2105.543 kb on - strandat 2105.602 kb on + strand, within AO353_09595at 2105.602 kb on + strand, within AO353_09595at 2105.603 kb on - strand, within AO353_09595at 2105.603 kb on - strand, within AO353_09595at 2105.656 kb on + strand, within AO353_09595at 2105.656 kb on + strand, within AO353_09595at 2105.656 kb on + strand, within AO353_09595at 2105.657 kb on - strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.785 kb on + strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.786 kb on - strand, within AO353_09595at 2105.826 kb on + strand, within AO353_09595at 2105.826 kb on + strand, within AO353_09595at 2105.919 kb on + strandat 2105.919 kb on + strandat 2105.919 kb on + strandat 2105.919 kb on + strandat 2105.919 kb on + strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.920 kb on - strandat 2105.940 kb on + strandat 2105.940 kb on + strandat 2105.941 kb on - strandat 2105.941 kb on - strandat 2105.941 kb on - strandat 2106.194 kb on + strand, within AO353_09600at 2106.194 kb on + strand, within AO353_09600at 2106.194 kb on + strand, within AO353_09600at 2106.194 kb on + strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.195 kb on - strand, within AO353_09600at 2106.387 kb on + strand, within AO353_09600at 2106.387 kb on + strand, within AO353_09600at 2106.387 kb on + strand, within AO353_09600at 2106.388 kb on - strand, within AO353_09600at 2106.388 kb on - strand, within AO353_09600at 2106.653 kb on + strand, within AO353_09605at 2106.780 kb on - strand, within AO353_09605at 2106.977 kb on + strandat 2106.977 kb on + strandat 2106.977 kb on + strandat 2106.977 kb on + strandat 2106.977 kb on + strandat 2106.978 kb on - strandat 2106.978 kb on - strandat 2106.978 kb on - strandat 2106.978 kb on - strandat 2106.978 kb on - strandat 2106.978 kb on - strandat 2106.978 kb on - strandat 2106.978 kb on - strandat 2106.978 kb on - strandat 2107.031 kb on + strandat 2107.085 kb on + strandat 2107.085 kb on + strandat 2107.085 kb on + strandat 2107.085 kb on + strandat 2107.085 kb on + strandat 2107.086 kb on - strandat 2107.086 kb on - strandat 2107.086 kb on - strandat 2107.086 kb on - strandat 2107.086 kb on - strandat 2107.086 kb on - strandat 2107.086 kb on - strandat 2107.116 kb on - strandat 2107.116 kb on - strandat 2107.131 kb on + strandat 2107.131 kb on + strandat 2107.132 kb on - strandat 2107.199 kb on + strand, within AO353_09610at 2107.199 kb on + strand, within AO353_09610at 2107.200 kb on - strand, within AO353_09610at 2107.394 kb on + strand, within AO353_09610

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
remove
2,105,064 + -0.1
2,105,064 + +1.1
2,105,067 + +1.2
2,105,067 + -1.4
2,105,067 + +0.3
2,105,067 + -1.2
2,105,067 + +0.2
2,105,068 - -0.4
2,105,083 + +0.3
2,105,083 + +0.2
2,105,083 + +0.3
2,105,083 + +0.8
2,105,083 + +0.7
2,105,100 + AO353_09590 0.12 -0.7
2,105,101 - AO353_09590 0.12 +0.6
2,105,157 + AO353_09590 0.24 -0.5
2,105,157 + AO353_09590 0.24 +1.1
2,105,158 - AO353_09590 0.24 +1.5
2,105,158 - AO353_09590 0.24 +1.9
2,105,205 + AO353_09590 0.34 -0.0
2,105,205 + AO353_09590 0.34 +0.4
2,105,205 + AO353_09590 0.34 -0.6
2,105,205 + AO353_09590 0.34 +0.7
2,105,205 + AO353_09590 0.34 -0.4
2,105,205 + AO353_09590 0.34 +0.4
2,105,205 + AO353_09590 0.34 -2.4
2,105,205 + AO353_09590 0.34 +0.9
2,105,206 - AO353_09590 0.35 -0.5
2,105,206 - AO353_09590 0.35 +0.6
2,105,206 - AO353_09590 0.35 +0.4
2,105,206 - AO353_09590 0.35 +0.1
2,105,206 - AO353_09590 0.35 +0.1
2,105,206 - AO353_09590 0.35 +0.6
2,105,206 - AO353_09590 0.35 +0.9
2,105,209 + AO353_09590 0.35 +0.8
2,105,209 + AO353_09590 0.35 +1.4
2,105,209 + AO353_09590 0.35 +0.3
2,105,209 + AO353_09590 0.35 -2.4
2,105,209 + AO353_09590 0.35 +1.9
2,105,209 + AO353_09590 0.35 +0.8
2,105,209 + AO353_09590 0.35 +0.9
2,105,209 + AO353_09590 0.35 +0.9
2,105,209 + AO353_09590 0.35 +0.3
2,105,210 - AO353_09590 0.36 -0.8
2,105,210 - AO353_09590 0.36 -0.3
2,105,210 - AO353_09590 0.36 -0.8
2,105,210 - AO353_09590 0.36 -1.1
2,105,210 - AO353_09590 0.36 +0.5
2,105,210 - AO353_09590 0.36 +0.1
2,105,210 - AO353_09590 0.36 +0.0
2,105,210 - AO353_09590 0.36 +1.3
2,105,210 - AO353_09590 0.36 +0.9
2,105,210 - AO353_09590 0.36 -1.1
2,105,210 - AO353_09590 0.36 +0.3
2,105,361 + AO353_09590 0.68 +0.0
2,105,362 - AO353_09590 0.69 -2.2
2,105,468 - +1.0
2,105,527 + +1.5
2,105,527 + +1.2
2,105,542 + -1.7
2,105,542 + -0.1
2,105,542 + +0.7
2,105,542 + +0.7
2,105,543 - +0.1
2,105,602 + AO353_09595 0.23 +0.3
2,105,602 + AO353_09595 0.23 -0.3
2,105,603 - AO353_09595 0.23 +0.5
2,105,603 - AO353_09595 0.23 +0.6
2,105,656 + AO353_09595 0.35 -1.4
2,105,656 + AO353_09595 0.35 -0.4
2,105,656 + AO353_09595 0.35 -0.2
2,105,657 - AO353_09595 0.35 -1.0
2,105,785 + AO353_09595 0.64 -1.0
2,105,785 + AO353_09595 0.64 -1.0
2,105,785 + AO353_09595 0.64 +0.9
2,105,785 + AO353_09595 0.64 +0.9
2,105,785 + AO353_09595 0.64 -0.7
2,105,785 + AO353_09595 0.64 +1.5
2,105,785 + AO353_09595 0.64 +0.3
2,105,785 + AO353_09595 0.64 -0.6
2,105,785 + AO353_09595 0.64 +2.3
2,105,786 - AO353_09595 0.64 -0.5
2,105,786 - AO353_09595 0.64 +0.7
2,105,786 - AO353_09595 0.64 +0.1
2,105,786 - AO353_09595 0.64 +0.1
2,105,786 - AO353_09595 0.64 -0.3
2,105,786 - AO353_09595 0.64 -0.1
2,105,826 + AO353_09595 0.73 -0.1
2,105,826 + AO353_09595 0.73 +0.1
2,105,919 + -0.6
2,105,919 + -0.4
2,105,919 + +0.9
2,105,919 + -1.3
2,105,919 + -1.3
2,105,920 - +0.1
2,105,920 - +0.1
2,105,920 - -0.3
2,105,920 - -0.4
2,105,920 - +0.7
2,105,920 - +1.1
2,105,920 - -0.9
2,105,940 + -0.8
2,105,940 + -0.4
2,105,941 - -1.4
2,105,941 - -0.5
2,105,941 - -0.9
2,106,194 + AO353_09600 0.42 +0.7
2,106,194 + AO353_09600 0.42 -0.1
2,106,194 + AO353_09600 0.42 +1.0
2,106,194 + AO353_09600 0.42 -0.7
2,106,195 - AO353_09600 0.42 +1.3
2,106,195 - AO353_09600 0.42 -0.8
2,106,195 - AO353_09600 0.42 +1.4
2,106,195 - AO353_09600 0.42 +1.5
2,106,195 - AO353_09600 0.42 +1.2
2,106,195 - AO353_09600 0.42 -0.3
2,106,195 - AO353_09600 0.42 +1.9
2,106,195 - AO353_09600 0.42 -0.1
2,106,195 - AO353_09600 0.42 -1.4
2,106,195 - AO353_09600 0.42 +1.9
2,106,195 - AO353_09600 0.42 +0.7
2,106,195 - AO353_09600 0.42 -0.7
2,106,195 - AO353_09600 0.42 -1.7
2,106,195 - AO353_09600 0.42 +0.7
2,106,387 + AO353_09600 0.85 -0.9
2,106,387 + AO353_09600 0.85 +0.3
2,106,387 + AO353_09600 0.85 -0.0
2,106,388 - AO353_09600 0.86 +1.2
2,106,388 - AO353_09600 0.86 +0.9
2,106,653 + AO353_09605 0.41 -0.7
2,106,780 - AO353_09605 0.65 -1.0
2,106,977 + -0.7
2,106,977 + -0.1
2,106,977 + +0.2
2,106,977 + -0.4
2,106,977 + +0.0
2,106,978 - -0.5
2,106,978 - -0.3
2,106,978 - +0.9
2,106,978 - +2.9
2,106,978 - +0.1
2,106,978 - -0.1
2,106,978 - -0.0
2,106,978 - -0.1
2,106,978 - -0.1
2,107,031 + -0.9
2,107,085 + -1.2
2,107,085 + -0.4
2,107,085 + +0.6
2,107,085 + -0.1
2,107,085 + +0.7
2,107,086 - -0.3
2,107,086 - -0.1
2,107,086 - +1.6
2,107,086 - -0.9
2,107,086 - -0.4
2,107,086 - -0.9
2,107,086 - -0.9
2,107,116 - -0.6
2,107,116 - -0.9
2,107,131 + +0.2
2,107,131 + +0.3
2,107,132 - +1.9
2,107,199 + AO353_09610 0.13 +0.5
2,107,199 + AO353_09610 0.13 -0.3
2,107,200 - AO353_09610 0.13 -0.3
2,107,394 + AO353_09610 0.24 -0.1

Or see this region's nucleotide sequence