Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08060

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08055 and AO353_08060 are separated by 29 nucleotidesAO353_08060 and AO353_08065 are separated by 27 nucleotides AO353_08055: AO353_08055 - ABC transporter, at 1,776,110 to 1,777,012 _08055 AO353_08060: AO353_08060 - hypothetical protein, at 1,777,042 to 1,777,392 _08060 AO353_08065: AO353_08065 - amino acid dehydrogenase, at 1,777,420 to 1,778,661 _08065 Position (kb) 1777 1778Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1776.128 kb on + strandat 1776.128 kb on + strandat 1776.128 kb on + strandat 1776.190 kb on + strandat 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.222 kb on + strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.223 kb on - strand, within AO353_08055at 1776.249 kb on + strand, within AO353_08055at 1776.249 kb on + strand, within AO353_08055at 1776.249 kb on + strand, within AO353_08055at 1776.249 kb on + strand, within AO353_08055at 1776.250 kb on - strand, within AO353_08055at 1776.318 kb on + strand, within AO353_08055at 1776.319 kb on - strand, within AO353_08055at 1776.319 kb on - strand, within AO353_08055at 1776.319 kb on - strand, within AO353_08055at 1776.347 kb on + strand, within AO353_08055at 1776.347 kb on + strand, within AO353_08055at 1776.347 kb on + strand, within AO353_08055at 1776.347 kb on + strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.348 kb on - strand, within AO353_08055at 1776.390 kb on + strand, within AO353_08055at 1776.390 kb on + strand, within AO353_08055at 1776.391 kb on - strand, within AO353_08055at 1776.411 kb on + strand, within AO353_08055at 1776.411 kb on + strand, within AO353_08055at 1776.412 kb on - strand, within AO353_08055at 1776.412 kb on - strand, within AO353_08055at 1776.412 kb on - strand, within AO353_08055at 1776.412 kb on - strand, within AO353_08055at 1776.508 kb on - strand, within AO353_08055at 1776.608 kb on + strand, within AO353_08055at 1776.608 kb on + strand, within AO353_08055at 1776.624 kb on + strand, within AO353_08055at 1776.624 kb on + strand, within AO353_08055at 1776.624 kb on + strand, within AO353_08055at 1776.624 kb on + strand, within AO353_08055at 1776.624 kb on + strand, within AO353_08055at 1776.625 kb on - strand, within AO353_08055at 1776.628 kb on + strand, within AO353_08055at 1776.628 kb on + strand, within AO353_08055at 1776.628 kb on + strand, within AO353_08055at 1776.628 kb on + strand, within AO353_08055at 1776.628 kb on + strand, within AO353_08055at 1776.629 kb on - strand, within AO353_08055at 1776.629 kb on - strand, within AO353_08055at 1776.636 kb on + strand, within AO353_08055at 1776.636 kb on + strand, within AO353_08055at 1776.680 kb on - strand, within AO353_08055at 1776.698 kb on + strand, within AO353_08055at 1776.698 kb on + strand, within AO353_08055at 1776.698 kb on + strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.699 kb on - strand, within AO353_08055at 1776.750 kb on + strand, within AO353_08055at 1776.750 kb on + strand, within AO353_08055at 1776.750 kb on + strand, within AO353_08055at 1776.750 kb on + strand, within AO353_08055at 1776.750 kb on + strand, within AO353_08055at 1776.750 kb on + strand, within AO353_08055at 1776.750 kb on + strand, within AO353_08055at 1776.751 kb on - strand, within AO353_08055at 1776.751 kb on - strand, within AO353_08055at 1776.751 kb on - strand, within AO353_08055at 1776.751 kb on - strand, within AO353_08055at 1776.751 kb on - strand, within AO353_08055at 1776.751 kb on - strand, within AO353_08055at 1776.790 kb on + strand, within AO353_08055at 1776.790 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on + strand, within AO353_08055at 1776.858 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1776.859 kb on - strand, within AO353_08055at 1777.016 kb on + strandat 1777.016 kb on + strandat 1777.016 kb on + strandat 1777.016 kb on + strandat 1777.016 kb on + strandat 1777.016 kb on + strandat 1777.016 kb on + strandat 1777.017 kb on - strandat 1777.017 kb on - strandat 1777.017 kb on - strandat 1777.017 kb on - strandat 1777.039 kb on + strandat 1777.039 kb on + strandat 1777.039 kb on + strandat 1777.039 kb on + strandat 1777.039 kb on + strandat 1777.039 kb on + strandat 1777.040 kb on - strandat 1777.040 kb on - strandat 1777.040 kb on - strandat 1777.040 kb on - strandat 1777.040 kb on - strandat 1777.040 kb on - strandat 1777.040 kb on - strandat 1777.040 kb on - strandat 1777.040 kb on - strandat 1777.060 kb on - strandat 1777.196 kb on + strand, within AO353_08060at 1777.196 kb on + strand, within AO353_08060at 1777.196 kb on + strand, within AO353_08060at 1777.196 kb on + strand, within AO353_08060at 1777.197 kb on - strand, within AO353_08060at 1777.197 kb on - strand, within AO353_08060at 1777.357 kb on + strand, within AO353_08060at 1777.377 kb on + strandat 1777.378 kb on - strandat 1777.378 kb on - strandat 1777.378 kb on - strandat 1777.437 kb on + strandat 1777.437 kb on + strandat 1777.437 kb on + strandat 1777.438 kb on - strandat 1777.438 kb on - strandat 1777.560 kb on - strand, within AO353_08065at 1777.560 kb on - strand, within AO353_08065at 1777.608 kb on + strand, within AO353_08065at 1777.608 kb on + strand, within AO353_08065at 1777.609 kb on - strand, within AO353_08065at 1777.609 kb on - strand, within AO353_08065at 1777.609 kb on - strand, within AO353_08065at 1777.634 kb on + strand, within AO353_08065at 1777.634 kb on + strand, within AO353_08065at 1777.634 kb on + strand, within AO353_08065at 1777.634 kb on + strand, within AO353_08065at 1777.634 kb on + strand, within AO353_08065at 1777.634 kb on + strand, within AO353_08065at 1777.635 kb on - strand, within AO353_08065at 1777.635 kb on - strand, within AO353_08065at 1777.635 kb on - strand, within AO353_08065at 1777.635 kb on - strand, within AO353_08065at 1777.635 kb on - strand, within AO353_08065at 1777.635 kb on - strand, within AO353_08065at 1777.635 kb on - strand, within AO353_08065at 1777.766 kb on + strand, within AO353_08065at 1777.766 kb on + strand, within AO353_08065at 1777.767 kb on - strand, within AO353_08065at 1777.767 kb on - strand, within AO353_08065at 1777.784 kb on + strand, within AO353_08065at 1777.842 kb on + strand, within AO353_08065at 1777.842 kb on + strand, within AO353_08065at 1777.842 kb on + strand, within AO353_08065at 1777.842 kb on + strand, within AO353_08065at 1777.842 kb on + strand, within AO353_08065at 1777.843 kb on - strand, within AO353_08065at 1777.843 kb on - strand, within AO353_08065at 1777.843 kb on - strand, within AO353_08065at 1777.843 kb on - strand, within AO353_08065at 1777.843 kb on - strand, within AO353_08065at 1777.843 kb on - strand, within AO353_08065at 1777.844 kb on + strand, within AO353_08065at 1777.860 kb on - strand, within AO353_08065at 1777.967 kb on - strand, within AO353_08065at 1778.023 kb on + strand, within AO353_08065at 1778.024 kb on - strand, within AO353_08065at 1778.098 kb on - strand, within AO353_08065at 1778.099 kb on + strand, within AO353_08065at 1778.099 kb on + strand, within AO353_08065at 1778.099 kb on + strand, within AO353_08065at 1778.099 kb on + strand, within AO353_08065at 1778.099 kb on + strand, within AO353_08065at 1778.099 kb on + strand, within AO353_08065at 1778.099 kb on + strand, within AO353_08065at 1778.100 kb on - strand, within AO353_08065at 1778.100 kb on - strand, within AO353_08065at 1778.100 kb on - strand, within AO353_08065at 1778.100 kb on - strand, within AO353_08065at 1778.100 kb on - strand, within AO353_08065at 1778.100 kb on - strand, within AO353_08065at 1778.318 kb on - strand, within AO353_08065at 1778.329 kb on + strand, within AO353_08065at 1778.330 kb on - strand, within AO353_08065at 1778.330 kb on - strand, within AO353_08065at 1778.330 kb on - strand, within AO353_08065at 1778.330 kb on - strand, within AO353_08065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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1,776,128 + +0.8
1,776,128 + -1.4
1,776,128 + +0.8
1,776,190 + -0.3
1,776,222 + AO353_08055 0.12 -0.7
1,776,222 + AO353_08055 0.12 +0.2
1,776,222 + AO353_08055 0.12 +0.5
1,776,222 + AO353_08055 0.12 +3.8
1,776,222 + AO353_08055 0.12 +0.8
1,776,222 + AO353_08055 0.12 +0.2
1,776,222 + AO353_08055 0.12 -0.5
1,776,222 + AO353_08055 0.12 +1.2
1,776,222 + AO353_08055 0.12 +1.8
1,776,222 + AO353_08055 0.12 -0.1
1,776,223 - AO353_08055 0.13 +0.1
1,776,223 - AO353_08055 0.13 +0.8
1,776,223 - AO353_08055 0.13 +0.3
1,776,223 - AO353_08055 0.13 -1.5
1,776,223 - AO353_08055 0.13 +1.8
1,776,223 - AO353_08055 0.13 +0.5
1,776,223 - AO353_08055 0.13 -0.4
1,776,223 - AO353_08055 0.13 +1.0
1,776,223 - AO353_08055 0.13 -0.4
1,776,223 - AO353_08055 0.13 -0.8
1,776,249 + AO353_08055 0.15 -0.1
1,776,249 + AO353_08055 0.15 -1.5
1,776,249 + AO353_08055 0.15 +0.6
1,776,249 + AO353_08055 0.15 +0.5
1,776,250 - AO353_08055 0.16 +0.2
1,776,318 + AO353_08055 0.23 +0.2
1,776,319 - AO353_08055 0.23 -1.0
1,776,319 - AO353_08055 0.23 +1.5
1,776,319 - AO353_08055 0.23 +0.0
1,776,347 + AO353_08055 0.26 -0.2
1,776,347 + AO353_08055 0.26 -1.1
1,776,347 + AO353_08055 0.26 +2.8
1,776,347 + AO353_08055 0.26 -0.8
1,776,348 - AO353_08055 0.26 +0.9
1,776,348 - AO353_08055 0.26 -0.4
1,776,348 - AO353_08055 0.26 -0.1
1,776,348 - AO353_08055 0.26 -0.4
1,776,348 - AO353_08055 0.26 +0.4
1,776,348 - AO353_08055 0.26 -2.0
1,776,348 - AO353_08055 0.26 -0.2
1,776,348 - AO353_08055 0.26 +0.7
1,776,348 - AO353_08055 0.26 -1.2
1,776,390 + AO353_08055 0.31 -0.1
1,776,390 + AO353_08055 0.31 +0.5
1,776,391 - AO353_08055 0.31 +0.2
1,776,411 + AO353_08055 0.33 +0.2
1,776,411 + AO353_08055 0.33 +1.0
1,776,412 - AO353_08055 0.33 -0.2
1,776,412 - AO353_08055 0.33 +0.8
1,776,412 - AO353_08055 0.33 +0.5
1,776,412 - AO353_08055 0.33 +1.4
1,776,508 - AO353_08055 0.44 -0.1
1,776,608 + AO353_08055 0.55 +1.0
1,776,608 + AO353_08055 0.55 -0.2
1,776,624 + AO353_08055 0.57 -0.7
1,776,624 + AO353_08055 0.57 +0.8
1,776,624 + AO353_08055 0.57 -0.6
1,776,624 + AO353_08055 0.57 +0.2
1,776,624 + AO353_08055 0.57 +0.0
1,776,625 - AO353_08055 0.57 -0.2
1,776,628 + AO353_08055 0.57 -1.0
1,776,628 + AO353_08055 0.57 -0.5
1,776,628 + AO353_08055 0.57 -0.7
1,776,628 + AO353_08055 0.57 -0.2
1,776,628 + AO353_08055 0.57 -0.2
1,776,629 - AO353_08055 0.57 +1.1
1,776,629 - AO353_08055 0.57 -0.0
1,776,636 + AO353_08055 0.58 -0.4
1,776,636 + AO353_08055 0.58 +1.5
1,776,680 - AO353_08055 0.63 +1.0
1,776,698 + AO353_08055 0.65 -1.8
1,776,698 + AO353_08055 0.65 +1.2
1,776,698 + AO353_08055 0.65 +0.9
1,776,699 - AO353_08055 0.65 +1.4
1,776,699 - AO353_08055 0.65 -0.3
1,776,699 - AO353_08055 0.65 +0.2
1,776,699 - AO353_08055 0.65 +0.6
1,776,699 - AO353_08055 0.65 +0.6
1,776,699 - AO353_08055 0.65 +0.8
1,776,699 - AO353_08055 0.65 -0.1
1,776,699 - AO353_08055 0.65 +0.5
1,776,699 - AO353_08055 0.65 -0.7
1,776,699 - AO353_08055 0.65 +1.2
1,776,750 + AO353_08055 0.71 -1.9
1,776,750 + AO353_08055 0.71 -0.5
1,776,750 + AO353_08055 0.71 -0.4
1,776,750 + AO353_08055 0.71 -0.5
1,776,750 + AO353_08055 0.71 +0.3
1,776,750 + AO353_08055 0.71 -0.2
1,776,750 + AO353_08055 0.71 +0.5
1,776,751 - AO353_08055 0.71 -0.1
1,776,751 - AO353_08055 0.71 -0.7
1,776,751 - AO353_08055 0.71 -0.2
1,776,751 - AO353_08055 0.71 -0.5
1,776,751 - AO353_08055 0.71 +1.0
1,776,751 - AO353_08055 0.71 -0.1
1,776,790 + AO353_08055 0.75 -2.5
1,776,790 + AO353_08055 0.75 -0.3
1,776,858 + AO353_08055 0.83 +0.2
1,776,858 + AO353_08055 0.83 +0.2
1,776,858 + AO353_08055 0.83 -0.2
1,776,858 + AO353_08055 0.83 -0.7
1,776,858 + AO353_08055 0.83 -1.2
1,776,858 + AO353_08055 0.83 +0.2
1,776,858 + AO353_08055 0.83 +0.3
1,776,858 + AO353_08055 0.83 -0.7
1,776,858 + AO353_08055 0.83 -0.3
1,776,858 - AO353_08055 0.83 +0.5
1,776,859 - AO353_08055 0.83 +0.2
1,776,859 - AO353_08055 0.83 +0.3
1,776,859 - AO353_08055 0.83 +0.1
1,776,859 - AO353_08055 0.83 -0.2
1,776,859 - AO353_08055 0.83 +0.8
1,776,859 - AO353_08055 0.83 -0.3
1,776,859 - AO353_08055 0.83 -2.0
1,776,859 - AO353_08055 0.83 +1.2
1,776,859 - AO353_08055 0.83 +0.8
1,776,859 - AO353_08055 0.83 +0.2
1,776,859 - AO353_08055 0.83 -0.3
1,776,859 - AO353_08055 0.83 -1.7
1,776,859 - AO353_08055 0.83 +0.2
1,776,859 - AO353_08055 0.83 -0.2
1,777,016 + -1.5
1,777,016 + +0.1
1,777,016 + +0.3
1,777,016 + -1.0
1,777,016 + -1.2
1,777,016 + +0.2
1,777,016 + -2.3
1,777,017 - +1.0
1,777,017 - +1.4
1,777,017 - +0.6
1,777,017 - -1.2
1,777,039 + -1.1
1,777,039 + +0.0
1,777,039 + -0.7
1,777,039 + -0.2
1,777,039 + -0.5
1,777,039 + +0.8
1,777,040 - -0.2
1,777,040 - -0.8
1,777,040 - -0.5
1,777,040 - -1.0
1,777,040 - +1.0
1,777,040 - -0.9
1,777,040 - -0.2
1,777,040 - -0.9
1,777,040 - +0.5
1,777,060 - +0.6
1,777,196 + AO353_08060 0.44 -0.0
1,777,196 + AO353_08060 0.44 -0.0
1,777,196 + AO353_08060 0.44 +0.7
1,777,196 + AO353_08060 0.44 +1.8
1,777,197 - AO353_08060 0.44 +0.4
1,777,197 - AO353_08060 0.44 +0.0
1,777,357 + AO353_08060 0.90 +1.0
1,777,377 + -0.8
1,777,378 - -1.4
1,777,378 - -0.0
1,777,378 - -1.2
1,777,437 + +0.0
1,777,437 + +0.3
1,777,437 + +1.5
1,777,438 - +0.1
1,777,438 - -0.6
1,777,560 - AO353_08065 0.11 -1.8
1,777,560 - AO353_08065 0.11 -0.2
1,777,608 + AO353_08065 0.15 +0.4
1,777,608 + AO353_08065 0.15 -0.6
1,777,609 - AO353_08065 0.15 +1.2
1,777,609 - AO353_08065 0.15 +0.8
1,777,609 - AO353_08065 0.15 -1.4
1,777,634 + AO353_08065 0.17 +0.5
1,777,634 + AO353_08065 0.17 +0.6
1,777,634 + AO353_08065 0.17 -1.7
1,777,634 + AO353_08065 0.17 -0.8
1,777,634 + AO353_08065 0.17 -0.1
1,777,634 + AO353_08065 0.17 +0.2
1,777,635 - AO353_08065 0.17 +0.6
1,777,635 - AO353_08065 0.17 +0.1
1,777,635 - AO353_08065 0.17 -2.2
1,777,635 - AO353_08065 0.17 -0.2
1,777,635 - AO353_08065 0.17 -0.5
1,777,635 - AO353_08065 0.17 -0.5
1,777,635 - AO353_08065 0.17 -1.0
1,777,766 + AO353_08065 0.28 -0.8
1,777,766 + AO353_08065 0.28 +1.0
1,777,767 - AO353_08065 0.28 +0.2
1,777,767 - AO353_08065 0.28 -1.8
1,777,784 + AO353_08065 0.29 +0.3
1,777,842 + AO353_08065 0.34 -0.0
1,777,842 + AO353_08065 0.34 -0.6
1,777,842 + AO353_08065 0.34 -0.5
1,777,842 + AO353_08065 0.34 -1.8
1,777,842 + AO353_08065 0.34 +0.6
1,777,843 - AO353_08065 0.34 +0.8
1,777,843 - AO353_08065 0.34 -0.4
1,777,843 - AO353_08065 0.34 +0.2
1,777,843 - AO353_08065 0.34 +0.3
1,777,843 - AO353_08065 0.34 +0.0
1,777,843 - AO353_08065 0.34 +0.1
1,777,844 + AO353_08065 0.34 +0.6
1,777,860 - AO353_08065 0.35 +0.5
1,777,967 - AO353_08065 0.44 -0.2
1,778,023 + AO353_08065 0.49 -0.1
1,778,024 - AO353_08065 0.49 +1.3
1,778,098 - AO353_08065 0.55 -0.5
1,778,099 + AO353_08065 0.55 -0.5
1,778,099 + AO353_08065 0.55 +0.7
1,778,099 + AO353_08065 0.55 -0.4
1,778,099 + AO353_08065 0.55 +1.0
1,778,099 + AO353_08065 0.55 +0.2
1,778,099 + AO353_08065 0.55 -0.9
1,778,099 + AO353_08065 0.55 -0.3
1,778,100 - AO353_08065 0.55 -1.4
1,778,100 - AO353_08065 0.55 -1.5
1,778,100 - AO353_08065 0.55 +0.3
1,778,100 - AO353_08065 0.55 -0.5
1,778,100 - AO353_08065 0.55 -0.0
1,778,100 - AO353_08065 0.55 +0.5
1,778,318 - AO353_08065 0.72 -0.0
1,778,329 + AO353_08065 0.73 +0.7
1,778,330 - AO353_08065 0.73 +0.1
1,778,330 - AO353_08065 0.73 +1.3
1,778,330 - AO353_08065 0.73 -0.9
1,778,330 - AO353_08065 0.73 +0.2

Or see this region's nucleotide sequence