Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07910

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07905 and AO353_07910 are separated by 111 nucleotidesAO353_07910 and AO353_07915 are separated by 328 nucleotidesAO353_07915 and AO353_07920 are separated by 244 nucleotides AO353_07905: AO353_07905 - hypothetical protein, at 1,744,416 to 1,744,955 _07905 AO353_07910: AO353_07910 - hypothetical protein, at 1,745,067 to 1,745,336 _07910 AO353_07915: AO353_07915 - hypothetical protein, at 1,745,665 to 1,746,039 _07915 AO353_07920: AO353_07920 - hypothetical protein, at 1,746,284 to 1,746,643 _07920 Position (kb) 1745 1746Strain fitness (log2 ratio) -2 -1 0 1 2at 1744.189 kb on - strandat 1744.198 kb on + strandat 1744.409 kb on - strandat 1744.439 kb on - strandat 1744.527 kb on + strand, within AO353_07905at 1744.530 kb on - strand, within AO353_07905at 1744.547 kb on - strand, within AO353_07905at 1744.695 kb on + strand, within AO353_07905at 1744.695 kb on + strand, within AO353_07905at 1744.737 kb on + strand, within AO353_07905at 1744.738 kb on - strand, within AO353_07905at 1744.764 kb on - strand, within AO353_07905at 1744.770 kb on - strand, within AO353_07905at 1744.821 kb on - strand, within AO353_07905at 1744.884 kb on + strand, within AO353_07905at 1744.887 kb on + strand, within AO353_07905at 1744.907 kb on - strandat 1745.058 kb on + strandat 1745.059 kb on - strandat 1745.066 kb on - strandat 1745.115 kb on - strand, within AO353_07910at 1745.158 kb on - strand, within AO353_07910at 1745.179 kb on + strand, within AO353_07910at 1745.274 kb on - strand, within AO353_07910at 1745.307 kb on + strand, within AO353_07910at 1745.390 kb on + strandat 1745.390 kb on + strandat 1745.391 kb on - strandat 1745.480 kb on + strandat 1745.481 kb on - strandat 1745.509 kb on + strandat 1745.509 kb on + strandat 1745.536 kb on + strandat 1745.547 kb on - strandat 1745.623 kb on - strandat 1745.650 kb on - strandat 1745.693 kb on + strandat 1745.699 kb on + strandat 1745.727 kb on - strand, within AO353_07915at 1745.727 kb on - strand, within AO353_07915at 1745.734 kb on - strand, within AO353_07915at 1745.771 kb on + strand, within AO353_07915at 1745.772 kb on - strand, within AO353_07915at 1745.848 kb on + strand, within AO353_07915at 1745.848 kb on + strand, within AO353_07915at 1745.872 kb on - strand, within AO353_07915at 1745.883 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915at 1745.916 kb on - strand, within AO353_07915at 1745.980 kb on + strand, within AO353_07915at 1746.041 kb on + strandat 1746.132 kb on - strandat 1746.158 kb on + strandat 1746.158 kb on + strandat 1746.177 kb on - strandat 1746.177 kb on - strandat 1746.218 kb on + strandat 1746.218 kb on + strandat 1746.219 kb on - strandat 1746.219 kb on - strandat 1746.265 kb on - strandat 1746.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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1,744,189 - +0.3
1,744,198 + +1.0
1,744,409 - +1.0
1,744,439 - -0.1
1,744,527 + AO353_07905 0.21 -0.0
1,744,530 - AO353_07905 0.21 -2.4
1,744,547 - AO353_07905 0.24 +0.2
1,744,695 + AO353_07905 0.52 +0.8
1,744,695 + AO353_07905 0.52 -0.2
1,744,737 + AO353_07905 0.59 -0.2
1,744,738 - AO353_07905 0.60 -0.3
1,744,764 - AO353_07905 0.64 -0.3
1,744,770 - AO353_07905 0.66 -0.8
1,744,821 - AO353_07905 0.75 +1.0
1,744,884 + AO353_07905 0.87 +0.3
1,744,887 + AO353_07905 0.87 +1.5
1,744,907 - -0.5
1,745,058 + +2.4
1,745,059 - +1.4
1,745,066 - +0.3
1,745,115 - AO353_07910 0.18 +0.2
1,745,158 - AO353_07910 0.34 +0.3
1,745,179 + AO353_07910 0.41 -0.2
1,745,274 - AO353_07910 0.77 +0.8
1,745,307 + AO353_07910 0.89 +0.2
1,745,390 + -0.9
1,745,390 + -1.2
1,745,391 - -0.0
1,745,480 + +0.5
1,745,481 - -1.0
1,745,509 + -1.2
1,745,509 + +0.3
1,745,536 + +1.6
1,745,547 - -2.0
1,745,623 - +0.8
1,745,650 - +0.4
1,745,693 + +1.1
1,745,699 + -0.6
1,745,727 - AO353_07915 0.17 +0.2
1,745,727 - AO353_07915 0.17 +1.0
1,745,734 - AO353_07915 0.18 +0.2
1,745,771 + AO353_07915 0.28 -0.4
1,745,772 - AO353_07915 0.29 -0.1
1,745,848 + AO353_07915 0.49 +1.1
1,745,848 + AO353_07915 0.49 -0.6
1,745,872 - AO353_07915 0.55 -0.6
1,745,883 - AO353_07915 0.58 +0.0
1,745,916 - AO353_07915 0.67 -0.4
1,745,916 - AO353_07915 0.67 -0.1
1,745,916 - AO353_07915 0.67 +0.0
1,745,980 + AO353_07915 0.84 +1.0
1,746,041 + -0.2
1,746,132 - -1.4
1,746,158 + -0.6
1,746,158 + -0.2
1,746,177 - +0.3
1,746,177 - -0.2
1,746,218 + -1.3
1,746,218 + +0.1
1,746,219 - -1.0
1,746,219 - +0.5
1,746,265 - -0.9
1,746,312 - -0.7

Or see this region's nucleotide sequence