Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07645

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07640 and AO353_07645 are separated by 149 nucleotidesAO353_07645 and AO353_07650 are separated by 52 nucleotides AO353_07640: AO353_07640 - formyltetrahydrofolate deformylase, at 1,681,432 to 1,682,289 _07640 AO353_07645: AO353_07645 - sarcosine oxidase subunit gamma, at 1,682,439 to 1,683,071 _07645 AO353_07650: AO353_07650 - sarcosine oxidase subunit alpha, at 1,683,124 to 1,686,141 _07650 Position (kb) 1682 1683 1684Strain fitness (log2 ratio) -2 -1 0 1 2at 1681.441 kb on + strandat 1681.441 kb on + strandat 1681.441 kb on + strandat 1681.441 kb on + strandat 1681.441 kb on + strandat 1681.441 kb on + strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.442 kb on - strandat 1681.551 kb on - strandat 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.619 kb on + strand, within AO353_07640at 1681.620 kb on - strand, within AO353_07640at 1681.620 kb on - strand, within AO353_07640at 1681.620 kb on - strand, within AO353_07640at 1681.658 kb on + strand, within AO353_07640at 1681.658 kb on + strand, within AO353_07640at 1681.658 kb on + strand, within AO353_07640at 1681.658 kb on + strand, within AO353_07640at 1681.658 kb on + strand, within AO353_07640at 1681.658 kb on + strand, within AO353_07640at 1681.658 kb on + strand, within AO353_07640at 1681.658 kb on + strand, within AO353_07640at 1681.659 kb on - strand, within AO353_07640at 1681.659 kb on - strand, within AO353_07640at 1681.659 kb on - strand, within AO353_07640at 1681.769 kb on + strand, within AO353_07640at 1681.769 kb on + strand, within AO353_07640at 1681.769 kb on + strand, within AO353_07640at 1681.769 kb on + strand, within AO353_07640at 1681.769 kb on + strand, within AO353_07640at 1681.769 kb on + strand, within AO353_07640at 1681.769 kb on + strand, within AO353_07640at 1681.770 kb on - strand, within AO353_07640at 1681.770 kb on - strand, within AO353_07640at 1681.770 kb on - strand, within AO353_07640at 1681.770 kb on - strand, within AO353_07640at 1681.868 kb on + strand, within AO353_07640at 1681.869 kb on - strand, within AO353_07640at 1681.869 kb on - strand, within AO353_07640at 1681.871 kb on + strand, within AO353_07640at 1681.872 kb on - strand, within AO353_07640at 1681.933 kb on + strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.934 kb on - strand, within AO353_07640at 1681.967 kb on + strand, within AO353_07640at 1681.968 kb on - strand, within AO353_07640at 1682.189 kb on + strand, within AO353_07640at 1682.189 kb on + strand, within AO353_07640at 1682.189 kb on + strand, within AO353_07640at 1682.189 kb on + strand, within AO353_07640at 1682.189 kb on + strand, within AO353_07640at 1682.189 kb on + strand, within AO353_07640at 1682.189 kb on + strand, within AO353_07640at 1682.189 kb on + strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.190 kb on - strand, within AO353_07640at 1682.290 kb on - strandat 1682.290 kb on - strandat 1682.338 kb on + strandat 1682.338 kb on + strandat 1682.347 kb on + strandat 1682.348 kb on - strandat 1682.348 kb on - strandat 1682.348 kb on - strandat 1682.348 kb on - strandat 1682.348 kb on - strandat 1682.353 kb on + strandat 1682.381 kb on + strandat 1682.381 kb on + strandat 1682.381 kb on + strandat 1682.381 kb on + strandat 1682.381 kb on + strandat 1682.381 kb on + strandat 1682.382 kb on - strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.383 kb on + strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.384 kb on - strandat 1682.453 kb on + strandat 1682.461 kb on + strandat 1682.461 kb on + strandat 1682.488 kb on - strandat 1682.498 kb on - strandat 1682.626 kb on + strand, within AO353_07645at 1682.627 kb on - strand, within AO353_07645at 1682.627 kb on - strand, within AO353_07645at 1683.071 kb on + strandat 1683.071 kb on + strandat 1683.071 kb on + strandat 1683.072 kb on - strandat 1683.072 kb on - strandat 1683.072 kb on - strandat 1683.072 kb on - strandat 1683.093 kb on + strandat 1683.093 kb on + strandat 1683.093 kb on + strandat 1683.094 kb on - strandat 1683.094 kb on - strandat 1683.122 kb on + strandat 1683.123 kb on - strandat 1683.123 kb on - strandat 1683.290 kb on + strandat 1683.608 kb on + strand, within AO353_07650at 1683.608 kb on + strand, within AO353_07650at 1683.608 kb on + strand, within AO353_07650at 1683.608 kb on + strand, within AO353_07650at 1683.608 kb on + strand, within AO353_07650at 1683.609 kb on - strand, within AO353_07650at 1683.609 kb on - strand, within AO353_07650at 1683.653 kb on + strand, within AO353_07650at 1683.653 kb on + strand, within AO353_07650at 1683.654 kb on - strand, within AO353_07650at 1683.664 kb on + strand, within AO353_07650at 1683.664 kb on + strand, within AO353_07650at 1683.664 kb on + strand, within AO353_07650at 1683.664 kb on + strand, within AO353_07650at 1683.664 kb on + strand, within AO353_07650at 1683.664 kb on + strand, within AO353_07650at 1683.665 kb on - strand, within AO353_07650at 1683.665 kb on - strand, within AO353_07650at 1683.665 kb on - strand, within AO353_07650at 1683.665 kb on - strand, within AO353_07650at 1683.677 kb on + strand, within AO353_07650at 1683.677 kb on + strand, within AO353_07650at 1683.677 kb on + strand, within AO353_07650at 1683.677 kb on + strand, within AO353_07650at 1683.678 kb on - strand, within AO353_07650at 1683.866 kb on + strand, within AO353_07650at 1683.866 kb on + strand, within AO353_07650at 1683.866 kb on + strand, within AO353_07650at 1683.866 kb on + strand, within AO353_07650at 1683.866 kb on + strand, within AO353_07650at 1683.866 kb on + strand, within AO353_07650at 1683.866 kb on + strand, within AO353_07650at 1683.867 kb on - strand, within AO353_07650at 1683.867 kb on - strand, within AO353_07650at 1683.867 kb on - strand, within AO353_07650at 1683.867 kb on - strand, within AO353_07650at 1683.867 kb on - strand, within AO353_07650at 1683.867 kb on - strand, within AO353_07650at 1683.867 kb on - strand, within AO353_07650at 1684.014 kb on + strand, within AO353_07650at 1684.014 kb on + strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.015 kb on - strand, within AO353_07650at 1684.068 kb on + strand, within AO353_07650at 1684.069 kb on - strand, within AO353_07650at 1684.069 kb on - strand, within AO353_07650at 1684.069 kb on - strand, within AO353_07650at 1684.070 kb on + strand, within AO353_07650at 1684.070 kb on + strand, within AO353_07650at 1684.070 kb on + strand, within AO353_07650at 1684.070 kb on + strand, within AO353_07650at 1684.071 kb on - strand, within AO353_07650at 1684.071 kb on - strand, within AO353_07650

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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1,681,441 + -0.6
1,681,441 + -1.1
1,681,441 + -0.7
1,681,441 + -0.2
1,681,441 + -1.1
1,681,441 + -1.9
1,681,442 - -0.6
1,681,442 - -1.4
1,681,442 - -0.1
1,681,442 - -0.6
1,681,442 - -0.1
1,681,442 - +0.2
1,681,442 - -1.9
1,681,442 - -0.0
1,681,442 - -0.8
1,681,442 - +0.4
1,681,442 - -0.2
1,681,442 - -0.4
1,681,442 - -0.8
1,681,442 - +1.5
1,681,442 - -0.2
1,681,442 - -1.1
1,681,551 - -0.2
1,681,619 + AO353_07640 0.22 +0.3
1,681,619 + AO353_07640 0.22 +0.3
1,681,619 + AO353_07640 0.22 -1.6
1,681,619 + AO353_07640 0.22 -0.3
1,681,619 + AO353_07640 0.22 +1.2
1,681,619 + AO353_07640 0.22 +0.2
1,681,619 + AO353_07640 0.22 +0.4
1,681,619 + AO353_07640 0.22 -0.6
1,681,619 + AO353_07640 0.22 +0.6
1,681,619 + AO353_07640 0.22 +0.9
1,681,619 + AO353_07640 0.22 -0.2
1,681,620 - AO353_07640 0.22 +0.3
1,681,620 - AO353_07640 0.22 +1.9
1,681,620 - AO353_07640 0.22 -1.6
1,681,658 + AO353_07640 0.26 +0.3
1,681,658 + AO353_07640 0.26 -0.6
1,681,658 + AO353_07640 0.26 -0.4
1,681,658 + AO353_07640 0.26 -0.1
1,681,658 + AO353_07640 0.26 +0.8
1,681,658 + AO353_07640 0.26 -0.3
1,681,658 + AO353_07640 0.26 -0.1
1,681,658 + AO353_07640 0.26 -0.8
1,681,659 - AO353_07640 0.26 +1.1
1,681,659 - AO353_07640 0.26 -0.5
1,681,659 - AO353_07640 0.26 +0.9
1,681,769 + AO353_07640 0.39 -0.8
1,681,769 + AO353_07640 0.39 +0.9
1,681,769 + AO353_07640 0.39 +1.5
1,681,769 + AO353_07640 0.39 +0.2
1,681,769 + AO353_07640 0.39 +0.5
1,681,769 + AO353_07640 0.39 -0.3
1,681,769 + AO353_07640 0.39 -0.6
1,681,770 - AO353_07640 0.39 -2.1
1,681,770 - AO353_07640 0.39 +0.4
1,681,770 - AO353_07640 0.39 +1.3
1,681,770 - AO353_07640 0.39 -0.1
1,681,868 + AO353_07640 0.51 -1.6
1,681,869 - AO353_07640 0.51 +0.6
1,681,869 - AO353_07640 0.51 +0.2
1,681,871 + AO353_07640 0.51 -1.1
1,681,872 - AO353_07640 0.51 +0.1
1,681,933 + AO353_07640 0.58 +0.2
1,681,934 - AO353_07640 0.59 +0.0
1,681,934 - AO353_07640 0.59 -0.6
1,681,934 - AO353_07640 0.59 -0.4
1,681,934 - AO353_07640 0.59 -0.6
1,681,934 - AO353_07640 0.59 +0.2
1,681,934 - AO353_07640 0.59 +0.8
1,681,934 - AO353_07640 0.59 +0.8
1,681,934 - AO353_07640 0.59 +0.8
1,681,934 - AO353_07640 0.59 +0.4
1,681,934 - AO353_07640 0.59 -0.6
1,681,934 - AO353_07640 0.59 +0.9
1,681,967 + AO353_07640 0.62 +0.6
1,681,968 - AO353_07640 0.62 -0.1
1,682,189 + AO353_07640 0.88 +0.8
1,682,189 + AO353_07640 0.88 +0.1
1,682,189 + AO353_07640 0.88 -0.4
1,682,189 + AO353_07640 0.88 +0.5
1,682,189 + AO353_07640 0.88 -1.1
1,682,189 + AO353_07640 0.88 -0.1
1,682,189 + AO353_07640 0.88 +0.2
1,682,189 + AO353_07640 0.88 +0.1
1,682,190 - AO353_07640 0.88 +1.0
1,682,190 - AO353_07640 0.88 +1.2
1,682,190 - AO353_07640 0.88 +0.4
1,682,190 - AO353_07640 0.88 +0.1
1,682,190 - AO353_07640 0.88 -0.2
1,682,190 - AO353_07640 0.88 -0.6
1,682,190 - AO353_07640 0.88 -1.2
1,682,190 - AO353_07640 0.88 +0.0
1,682,190 - AO353_07640 0.88 +0.3
1,682,190 - AO353_07640 0.88 +0.6
1,682,290 - +0.2
1,682,290 - +1.9
1,682,338 + -0.9
1,682,338 + +0.8
1,682,347 + -0.5
1,682,348 - +0.4
1,682,348 - -0.6
1,682,348 - -0.2
1,682,348 - -1.2
1,682,348 - +0.3
1,682,353 + +0.4
1,682,381 + -0.1
1,682,381 + +0.0
1,682,381 + -0.5
1,682,381 + +0.8
1,682,381 + -0.4
1,682,381 + -1.1
1,682,382 - +0.8
1,682,383 + -0.3
1,682,383 + +0.2
1,682,383 + +0.8
1,682,383 + +0.6
1,682,383 + -0.1
1,682,383 + -0.8
1,682,383 + -0.6
1,682,383 + -1.6
1,682,383 + -0.2
1,682,383 + -0.6
1,682,383 + +2.0
1,682,383 + -0.2
1,682,383 + +2.0
1,682,383 + +0.3
1,682,383 + +0.9
1,682,383 + -0.0
1,682,383 + +0.4
1,682,383 + +0.2
1,682,383 + -0.9
1,682,383 + +0.5
1,682,384 - -1.2
1,682,384 - +0.9
1,682,384 - +0.6
1,682,384 - -0.9
1,682,384 - +0.0
1,682,384 - -0.3
1,682,384 - +0.2
1,682,384 - +0.3
1,682,384 - -0.2
1,682,384 - -0.8
1,682,384 - -0.2
1,682,384 - +0.8
1,682,384 - +0.1
1,682,384 - -1.2
1,682,384 - +1.8
1,682,384 - -0.1
1,682,384 - +0.6
1,682,384 - +1.8
1,682,384 - +0.2
1,682,384 - +0.3
1,682,384 - -0.2
1,682,453 + +1.2
1,682,461 + -0.9
1,682,461 + +0.4
1,682,488 - +0.8
1,682,498 - +0.6
1,682,626 + AO353_07645 0.30 +0.9
1,682,627 - AO353_07645 0.30 +0.5
1,682,627 - AO353_07645 0.30 +1.0
1,683,071 + +0.8
1,683,071 + -0.7
1,683,071 + -1.7
1,683,072 - -1.6
1,683,072 - +0.9
1,683,072 - -0.4
1,683,072 - +1.0
1,683,093 + -0.2
1,683,093 + +0.2
1,683,093 + +0.6
1,683,094 - -1.6
1,683,094 - -0.2
1,683,122 + -1.2
1,683,123 - -0.8
1,683,123 - -0.1
1,683,290 + +0.8
1,683,608 + AO353_07650 0.16 -0.0
1,683,608 + AO353_07650 0.16 -0.1
1,683,608 + AO353_07650 0.16 +0.4
1,683,608 + AO353_07650 0.16 +0.2
1,683,608 + AO353_07650 0.16 +0.6
1,683,609 - AO353_07650 0.16 -0.4
1,683,609 - AO353_07650 0.16 -0.8
1,683,653 + AO353_07650 0.18 +0.4
1,683,653 + AO353_07650 0.18 +1.8
1,683,654 - AO353_07650 0.18 -1.2
1,683,664 + AO353_07650 0.18 +0.5
1,683,664 + AO353_07650 0.18 -1.5
1,683,664 + AO353_07650 0.18 +0.9
1,683,664 + AO353_07650 0.18 +0.1
1,683,664 + AO353_07650 0.18 +0.2
1,683,664 + AO353_07650 0.18 -0.4
1,683,665 - AO353_07650 0.18 -0.2
1,683,665 - AO353_07650 0.18 -1.4
1,683,665 - AO353_07650 0.18 -0.4
1,683,665 - AO353_07650 0.18 -0.6
1,683,677 + AO353_07650 0.18 +0.8
1,683,677 + AO353_07650 0.18 -0.4
1,683,677 + AO353_07650 0.18 +0.1
1,683,677 + AO353_07650 0.18 +1.2
1,683,678 - AO353_07650 0.18 -2.3
1,683,866 + AO353_07650 0.25 -0.1
1,683,866 + AO353_07650 0.25 +0.9
1,683,866 + AO353_07650 0.25 +0.9
1,683,866 + AO353_07650 0.25 +0.1
1,683,866 + AO353_07650 0.25 +1.1
1,683,866 + AO353_07650 0.25 +1.5
1,683,866 + AO353_07650 0.25 +0.8
1,683,867 - AO353_07650 0.25 +0.2
1,683,867 - AO353_07650 0.25 -0.0
1,683,867 - AO353_07650 0.25 -0.4
1,683,867 - AO353_07650 0.25 +0.3
1,683,867 - AO353_07650 0.25 -0.6
1,683,867 - AO353_07650 0.25 -0.1
1,683,867 - AO353_07650 0.25 -0.3
1,684,014 + AO353_07650 0.29 -0.6
1,684,014 + AO353_07650 0.29 +0.3
1,684,015 - AO353_07650 0.30 +0.5
1,684,015 - AO353_07650 0.30 +0.6
1,684,015 - AO353_07650 0.30 +0.5
1,684,015 - AO353_07650 0.30 +0.2
1,684,015 - AO353_07650 0.30 -0.1
1,684,015 - AO353_07650 0.30 -0.6
1,684,015 - AO353_07650 0.30 -1.3
1,684,015 - AO353_07650 0.30 -1.1
1,684,015 - AO353_07650 0.30 +0.6
1,684,068 + AO353_07650 0.31 +1.2
1,684,069 - AO353_07650 0.31 +1.0
1,684,069 - AO353_07650 0.31 -0.2
1,684,069 - AO353_07650 0.31 -1.8
1,684,070 + AO353_07650 0.31 +1.2
1,684,070 + AO353_07650 0.31 -1.9
1,684,070 + AO353_07650 0.31 +0.5
1,684,070 + AO353_07650 0.31 -1.7
1,684,071 - AO353_07650 0.31 +0.2
1,684,071 - AO353_07650 0.31 +0.3

Or see this region's nucleotide sequence