Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07075

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07060 and AO353_07065 are separated by 9 nucleotidesAO353_07065 and AO353_07070 are separated by 45 nucleotidesAO353_07070 and AO353_07075 are separated by 53 nucleotidesAO353_07075 and AO353_07080 are separated by 84 nucleotidesAO353_07080 and AO353_07085 are separated by 26 nucleotidesAO353_07085 and AO353_07090 are separated by 25 nucleotidesAO353_07090 and AO353_07095 are separated by 142 nucleotidesAO353_07095 and AO353_07100 are separated by 7 nucleotides AO353_07060: AO353_07060 - antitermination protein NusG, at 1,557,021 to 1,557,554 _07060 AO353_07065: AO353_07065 - preprotein translocase subunit SecE, at 1,557,564 to 1,557,932 _07065 AO353_07070: AO353_07070 - tRNA-Trp, at 1,557,978 to 1,558,053 _07070 AO353_07075: AO353_07075 - elongation factor Tu, at 1,558,107 to 1,559,300 _07075 AO353_07080: AO353_07080 - tRNA-Thr, at 1,559,385 to 1,559,460 _07080 AO353_07085: AO353_07085 - tRNA-Gly, at 1,559,487 to 1,559,560 _07085 AO353_07090: AO353_07090 - tRNA-Tyr, at 1,559,586 to 1,559,670 _07090 AO353_07095: AO353_07095 - hypothetical protein, at 1,559,813 to 1,560,259 _07095 AO353_07100: AO353_07100 - type III pantothenate kinase, at 1,560,267 to 1,561,016 _07100 Position (kb) 1558 1559 1560Strain fitness (log2 ratio) -2 -1 0 1 2at 1558.109 kb on - strandat 1558.530 kb on - strand, within AO353_07075at 1558.530 kb on - strand, within AO353_07075at 1558.530 kb on - strand, within AO353_07075at 1558.530 kb on - strand, within AO353_07075at 1558.533 kb on - strand, within AO353_07075at 1558.695 kb on - strand, within AO353_07075at 1558.697 kb on - strand, within AO353_07075at 1558.697 kb on - strand, within AO353_07075at 1558.820 kb on - strand, within AO353_07075at 1558.913 kb on - strand, within AO353_07075at 1558.913 kb on - strand, within AO353_07075at 1558.913 kb on - strand, within AO353_07075at 1558.913 kb on - strand, within AO353_07075at 1558.913 kb on - strand, within AO353_07075at 1558.913 kb on - strand, within AO353_07075at 1558.913 kb on - strand, within AO353_07075at 1559.039 kb on - strand, within AO353_07075at 1559.093 kb on - strand, within AO353_07075at 1559.093 kb on - strand, within AO353_07075at 1559.229 kb on - strandat 1559.253 kb on - strandat 1559.257 kb on - strandat 1559.257 kb on - strandat 1559.257 kb on - strandat 1559.257 kb on - strandat 1559.274 kb on - strandat 1559.277 kb on - strandat 1559.326 kb on - strandat 1559.326 kb on - strandat 1559.346 kb on + strandat 1559.347 kb on - strandat 1559.347 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.382 kb on - strandat 1559.384 kb on - strandat 1559.384 kb on - strandat 1559.384 kb on - strandat 1559.384 kb on - strandat 1559.384 kb on - strandat 1559.384 kb on - strandat 1559.806 kb on - strandat 1559.806 kb on - strandat 1559.806 kb on - strandat 1559.806 kb on - strandat 1559.815 kb on - strandat 1559.815 kb on - strandat 1559.815 kb on - strandat 1559.815 kb on - strandat 1559.815 kb on - strandat 1559.846 kb on + strandat 1559.846 kb on + strandat 1559.846 kb on + strandat 1559.847 kb on - strandat 1559.851 kb on + strandat 1559.852 kb on - strandat 1559.858 kb on + strand, within AO353_07095at 1559.858 kb on + strand, within AO353_07095at 1559.876 kb on - strand, within AO353_07095at 1559.876 kb on - strand, within AO353_07095at 1559.927 kb on + strand, within AO353_07095at 1559.927 kb on + strand, within AO353_07095at 1559.927 kb on + strand, within AO353_07095at 1559.927 kb on + strand, within AO353_07095at 1559.928 kb on - strand, within AO353_07095at 1559.928 kb on - strand, within AO353_07095at 1559.928 kb on - strand, within AO353_07095at 1559.928 kb on - strand, within AO353_07095at 1560.051 kb on + strand, within AO353_07095at 1560.051 kb on + strand, within AO353_07095at 1560.052 kb on - strand, within AO353_07095at 1560.082 kb on + strand, within AO353_07095at 1560.082 kb on + strand, within AO353_07095at 1560.082 kb on + strand, within AO353_07095at 1560.083 kb on - strand, within AO353_07095at 1560.083 kb on - strand, within AO353_07095at 1560.083 kb on - strand, within AO353_07095at 1560.083 kb on - strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.101 kb on + strand, within AO353_07095at 1560.102 kb on - strand, within AO353_07095at 1560.102 kb on - strand, within AO353_07095at 1560.102 kb on - strand, within AO353_07095at 1560.102 kb on - strand, within AO353_07095at 1560.151 kb on + strand, within AO353_07095at 1560.151 kb on + strand, within AO353_07095at 1560.151 kb on + strand, within AO353_07095at 1560.152 kb on - strand, within AO353_07095at 1560.152 kb on - strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.153 kb on + strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.154 kb on - strand, within AO353_07095at 1560.213 kb on + strand, within AO353_07095at 1560.213 kb on + strand, within AO353_07095at 1560.213 kb on + strand, within AO353_07095at 1560.214 kb on - strand, within AO353_07095at 1560.216 kb on + strandat 1560.216 kb on + strandat 1560.217 kb on - strandat 1560.217 kb on - strandat 1560.217 kb on - strandat 1560.217 kb on - strandat 1560.259 kb on + strandat 1560.259 kb on + strandat 1560.259 kb on + strandat 1560.259 kb on + strandat 1560.260 kb on - strandat 1560.260 kb on - strandat 1560.260 kb on - strandat 1560.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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1,558,109 - +0.1
1,558,530 - AO353_07075 0.35 -1.0
1,558,530 - AO353_07075 0.35 +0.5
1,558,530 - AO353_07075 0.35 +0.5
1,558,530 - AO353_07075 0.35 -1.3
1,558,533 - AO353_07075 0.36 -0.8
1,558,695 - AO353_07075 0.49 -2.1
1,558,697 - AO353_07075 0.49 +0.9
1,558,697 - AO353_07075 0.49 -0.6
1,558,820 - AO353_07075 0.60 -0.9
1,558,913 - AO353_07075 0.68 +1.2
1,558,913 - AO353_07075 0.68 -0.9
1,558,913 - AO353_07075 0.68 -1.6
1,558,913 - AO353_07075 0.68 +0.1
1,558,913 - AO353_07075 0.68 -0.7
1,558,913 - AO353_07075 0.68 -1.3
1,558,913 - AO353_07075 0.68 -0.3
1,559,039 - AO353_07075 0.78 -1.5
1,559,093 - AO353_07075 0.83 -1.5
1,559,093 - AO353_07075 0.83 -0.8
1,559,229 - +0.4
1,559,253 - +0.5
1,559,257 - -1.9
1,559,257 - -0.3
1,559,257 - +0.1
1,559,257 - -1.5
1,559,274 - -0.3
1,559,277 - -0.6
1,559,326 - +2.7
1,559,326 - -0.2
1,559,346 + +0.1
1,559,347 - -0.9
1,559,347 - -1.1
1,559,382 - +1.0
1,559,382 - +0.2
1,559,382 - -1.5
1,559,382 - +0.4
1,559,382 - -2.4
1,559,382 - +0.1
1,559,382 - -2.1
1,559,382 - -1.5
1,559,382 - -0.6
1,559,382 - -1.3
1,559,382 - +0.3
1,559,384 - +0.3
1,559,384 - +0.1
1,559,384 - -0.9
1,559,384 - -0.1
1,559,384 - -1.2
1,559,384 - -0.3
1,559,806 - +0.0
1,559,806 - -1.2
1,559,806 - -0.2
1,559,806 - -1.9
1,559,815 - -0.0
1,559,815 - -1.0
1,559,815 - +2.7
1,559,815 - -1.3
1,559,815 - -1.5
1,559,846 + -1.0
1,559,846 + +1.5
1,559,846 + -1.4
1,559,847 - +0.1
1,559,851 + -0.6
1,559,852 - -0.5
1,559,858 + AO353_07095 0.10 -0.9
1,559,858 + AO353_07095 0.10 -1.8
1,559,876 - AO353_07095 0.14 +0.5
1,559,876 - AO353_07095 0.14 -0.6
1,559,927 + AO353_07095 0.26 -1.1
1,559,927 + AO353_07095 0.26 -0.6
1,559,927 + AO353_07095 0.26 -0.9
1,559,927 + AO353_07095 0.26 -0.1
1,559,928 - AO353_07095 0.26 +0.3
1,559,928 - AO353_07095 0.26 +0.4
1,559,928 - AO353_07095 0.26 -0.2
1,559,928 - AO353_07095 0.26 +0.1
1,560,051 + AO353_07095 0.53 -0.9
1,560,051 + AO353_07095 0.53 +0.2
1,560,052 - AO353_07095 0.53 +0.4
1,560,082 + AO353_07095 0.60 +0.4
1,560,082 + AO353_07095 0.60 -0.1
1,560,082 + AO353_07095 0.60 -1.1
1,560,083 - AO353_07095 0.60 -0.4
1,560,083 - AO353_07095 0.60 +1.4
1,560,083 - AO353_07095 0.60 +0.1
1,560,083 - AO353_07095 0.60 -1.2
1,560,101 + AO353_07095 0.64 +0.7
1,560,101 + AO353_07095 0.64 +0.6
1,560,101 + AO353_07095 0.64 -0.6
1,560,101 + AO353_07095 0.64 +0.1
1,560,101 + AO353_07095 0.64 +0.1
1,560,101 + AO353_07095 0.64 -0.7
1,560,101 + AO353_07095 0.64 -0.5
1,560,101 + AO353_07095 0.64 -0.4
1,560,102 - AO353_07095 0.65 -0.2
1,560,102 - AO353_07095 0.65 +0.1
1,560,102 - AO353_07095 0.65 -0.2
1,560,102 - AO353_07095 0.65 +0.0
1,560,151 + AO353_07095 0.76 -0.0
1,560,151 + AO353_07095 0.76 +0.7
1,560,151 + AO353_07095 0.76 -1.0
1,560,152 - AO353_07095 0.76 +0.7
1,560,152 - AO353_07095 0.76 +0.1
1,560,153 + AO353_07095 0.76 -0.3
1,560,153 + AO353_07095 0.76 -2.2
1,560,153 + AO353_07095 0.76 -0.8
1,560,153 + AO353_07095 0.76 +0.3
1,560,153 + AO353_07095 0.76 -0.3
1,560,153 + AO353_07095 0.76 +0.1
1,560,153 + AO353_07095 0.76 -0.8
1,560,153 + AO353_07095 0.76 +1.0
1,560,154 - AO353_07095 0.76 -0.5
1,560,154 - AO353_07095 0.76 +0.7
1,560,154 - AO353_07095 0.76 +1.7
1,560,154 - AO353_07095 0.76 +0.0
1,560,154 - AO353_07095 0.76 -0.2
1,560,154 - AO353_07095 0.76 -0.4
1,560,154 - AO353_07095 0.76 +0.9
1,560,154 - AO353_07095 0.76 +0.1
1,560,213 + AO353_07095 0.89 -0.6
1,560,213 + AO353_07095 0.89 -0.4
1,560,213 + AO353_07095 0.89 +0.3
1,560,214 - AO353_07095 0.90 +0.3
1,560,216 + -0.3
1,560,216 + +1.7
1,560,217 - -2.1
1,560,217 - +0.2
1,560,217 - +0.4
1,560,217 - -0.8
1,560,259 + +0.4
1,560,259 + -0.8
1,560,259 + +1.5
1,560,259 + -0.2
1,560,260 - -0.6
1,560,260 - +0.1
1,560,260 - -0.2
1,560,260 - -0.9

Or see this region's nucleotide sequence