Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05105

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05095 and AO353_05100 are separated by 12 nucleotidesAO353_05100 and AO353_05105 are separated by 162 nucleotidesAO353_05105 and AO353_05110 are separated by 2 nucleotides AO353_05095: AO353_05095 - TonB-dependent receptor, at 1,124,766 to 1,126,871 _05095 AO353_05100: AO353_05100 - nickel ABC transporter substrate-binding protein, at 1,126,884 to 1,127,612 _05100 AO353_05105: AO353_05105 - histidinol-phosphate aminotransferase, at 1,127,775 to 1,128,827 _05105 AO353_05110: AO353_05110 - histidinol dehydrogenase, at 1,128,830 to 1,130,155 _05110 Position (kb) 1127 1128 1129Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1126.788 kb on + strandat 1126.788 kb on + strandat 1126.789 kb on - strandat 1126.789 kb on - strandat 1126.789 kb on - strandat 1126.789 kb on - strandat 1126.803 kb on + strandat 1126.804 kb on - strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.813 kb on - strandat 1126.813 kb on - strandat 1126.813 kb on - strandat 1126.869 kb on + strandat 1126.869 kb on + strandat 1126.869 kb on + strandat 1126.870 kb on - strandat 1126.999 kb on - strand, within AO353_05100at 1126.999 kb on - strand, within AO353_05100at 1127.092 kb on + strand, within AO353_05100at 1127.092 kb on + strand, within AO353_05100at 1127.092 kb on + strand, within AO353_05100at 1127.093 kb on - strand, within AO353_05100at 1127.093 kb on - strand, within AO353_05100at 1127.093 kb on - strand, within AO353_05100at 1127.093 kb on - strand, within AO353_05100at 1127.256 kb on + strand, within AO353_05100at 1127.257 kb on - strand, within AO353_05100at 1127.272 kb on - strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.450 kb on + strand, within AO353_05100at 1127.610 kb on + strandat 1127.611 kb on - strandat 1127.670 kb on + strandat 1127.679 kb on + strandat 1127.679 kb on + strandat 1127.680 kb on - strandat 1127.680 kb on - strandat 1127.717 kb on - strandat 1127.717 kb on - strandat 1127.823 kb on - strandat 1128.046 kb on + strand, within AO353_05105at 1128.046 kb on + strand, within AO353_05105at 1128.046 kb on + strand, within AO353_05105at 1128.046 kb on + strand, within AO353_05105at 1128.046 kb on + strand, within AO353_05105at 1128.046 kb on + strand, within AO353_05105at 1128.047 kb on - strand, within AO353_05105at 1128.047 kb on - strand, within AO353_05105at 1128.047 kb on - strand, within AO353_05105at 1128.047 kb on - strand, within AO353_05105at 1128.047 kb on - strand, within AO353_05105at 1128.103 kb on + strand, within AO353_05105at 1128.277 kb on + strand, within AO353_05105at 1128.277 kb on + strand, within AO353_05105at 1128.278 kb on - strand, within AO353_05105at 1128.407 kb on - strand, within AO353_05105at 1128.466 kb on + strand, within AO353_05105at 1128.466 kb on + strand, within AO353_05105at 1128.466 kb on + strand, within AO353_05105at 1128.466 kb on + strand, within AO353_05105at 1128.467 kb on - strand, within AO353_05105at 1128.478 kb on + strand, within AO353_05105at 1128.478 kb on + strand, within AO353_05105at 1128.479 kb on - strand, within AO353_05105at 1128.479 kb on - strand, within AO353_05105at 1128.479 kb on - strand, within AO353_05105at 1128.479 kb on - strand, within AO353_05105at 1128.496 kb on + strand, within AO353_05105at 1128.496 kb on + strand, within AO353_05105at 1128.496 kb on + strand, within AO353_05105at 1128.603 kb on + strand, within AO353_05105at 1128.603 kb on + strand, within AO353_05105at 1128.603 kb on + strand, within AO353_05105at 1128.603 kb on + strand, within AO353_05105at 1128.603 kb on + strand, within AO353_05105at 1128.604 kb on - strand, within AO353_05105at 1128.604 kb on - strand, within AO353_05105at 1128.604 kb on - strand, within AO353_05105at 1128.604 kb on - strand, within AO353_05105at 1128.604 kb on - strand, within AO353_05105at 1128.604 kb on - strand, within AO353_05105at 1128.610 kb on + strand, within AO353_05105at 1128.610 kb on + strand, within AO353_05105at 1128.610 kb on + strand, within AO353_05105at 1128.610 kb on + strand, within AO353_05105at 1128.610 kb on + strand, within AO353_05105at 1128.610 kb on + strand, within AO353_05105at 1128.610 kb on + strand, within AO353_05105at 1128.610 kb on + strand, within AO353_05105at 1128.611 kb on - strand, within AO353_05105at 1128.611 kb on - strand, within AO353_05105at 1128.611 kb on - strand, within AO353_05105at 1128.611 kb on - strand, within AO353_05105at 1128.611 kb on - strand, within AO353_05105at 1128.611 kb on - strand, within AO353_05105at 1128.613 kb on + strand, within AO353_05105at 1128.614 kb on - strand, within AO353_05105at 1128.614 kb on - strand, within AO353_05105at 1128.614 kb on - strand, within AO353_05105at 1128.707 kb on + strand, within AO353_05105at 1128.708 kb on - strand, within AO353_05105at 1128.781 kb on - strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.784 kb on + strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.785 kb on - strandat 1128.862 kb on - strandat 1128.959 kb on - strandat 1128.959 kb on - strandat 1128.984 kb on + strand, within AO353_05110at 1128.984 kb on + strand, within AO353_05110at 1128.984 kb on + strand, within AO353_05110at 1128.984 kb on + strand, within AO353_05110at 1128.984 kb on + strand, within AO353_05110at 1128.984 kb on + strand, within AO353_05110at 1128.984 kb on + strand, within AO353_05110at 1128.984 kb on + strand, within AO353_05110at 1129.054 kb on - strand, within AO353_05110at 1129.075 kb on + strand, within AO353_05110at 1129.076 kb on - strand, within AO353_05110at 1129.076 kb on - strand, within AO353_05110at 1129.076 kb on - strand, within AO353_05110at 1129.076 kb on - strand, within AO353_05110at 1129.076 kb on - strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.545 kb on + strand, within AO353_05110at 1129.546 kb on - strand, within AO353_05110at 1129.750 kb on - strand, within AO353_05110at 1129.750 kb on - strand, within AO353_05110at 1129.750 kb on - strand, within AO353_05110at 1129.750 kb on - strand, within AO353_05110at 1129.812 kb on + strand, within AO353_05110at 1129.812 kb on + strand, within AO353_05110at 1129.813 kb on - strand, within AO353_05110at 1129.813 kb on - strand, within AO353_05110

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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1,126,788 + -0.4
1,126,788 + -0.1
1,126,789 - +1.1
1,126,789 - -0.5
1,126,789 - +1.3
1,126,789 - -0.4
1,126,803 + +0.2
1,126,804 - +0.1
1,126,812 + -0.1
1,126,812 + +0.9
1,126,812 + -0.1
1,126,812 + -0.8
1,126,812 + -1.2
1,126,812 + +0.2
1,126,813 - +1.6
1,126,813 - -0.0
1,126,813 - -0.3
1,126,869 + +0.1
1,126,869 + +0.1
1,126,869 + +0.4
1,126,870 - -0.5
1,126,999 - AO353_05100 0.16 -0.3
1,126,999 - AO353_05100 0.16 -0.4
1,127,092 + AO353_05100 0.29 -0.9
1,127,092 + AO353_05100 0.29 -0.4
1,127,092 + AO353_05100 0.29 +1.2
1,127,093 - AO353_05100 0.29 -0.7
1,127,093 - AO353_05100 0.29 -0.0
1,127,093 - AO353_05100 0.29 -0.7
1,127,093 - AO353_05100 0.29 +1.2
1,127,256 + AO353_05100 0.51 +0.4
1,127,257 - AO353_05100 0.51 -0.2
1,127,272 - AO353_05100 0.53 -1.8
1,127,290 + AO353_05100 0.56 +0.7
1,127,290 + AO353_05100 0.56 +0.2
1,127,290 + AO353_05100 0.56 -1.0
1,127,290 + AO353_05100 0.56 -0.1
1,127,290 + AO353_05100 0.56 +0.6
1,127,290 + AO353_05100 0.56 -0.4
1,127,290 + AO353_05100 0.56 -0.8
1,127,291 - AO353_05100 0.56 +0.4
1,127,291 - AO353_05100 0.56 -1.2
1,127,291 - AO353_05100 0.56 +0.9
1,127,291 - AO353_05100 0.56 +1.9
1,127,291 - AO353_05100 0.56 +1.4
1,127,291 - AO353_05100 0.56 -0.0
1,127,450 + AO353_05100 0.78 -0.0
1,127,610 + -1.2
1,127,611 - -1.0
1,127,670 + -0.8
1,127,679 + +0.2
1,127,679 + -0.2
1,127,680 - +1.2
1,127,680 - -0.8
1,127,717 - -0.2
1,127,717 - +0.6
1,127,823 - +1.6
1,128,046 + AO353_05105 0.26 -1.8
1,128,046 + AO353_05105 0.26 -1.0
1,128,046 + AO353_05105 0.26 -1.8
1,128,046 + AO353_05105 0.26 -0.0
1,128,046 + AO353_05105 0.26 -0.4
1,128,046 + AO353_05105 0.26 -0.3
1,128,047 - AO353_05105 0.26 -2.3
1,128,047 - AO353_05105 0.26 -0.0
1,128,047 - AO353_05105 0.26 -1.2
1,128,047 - AO353_05105 0.26 -1.2
1,128,047 - AO353_05105 0.26 -1.3
1,128,103 + AO353_05105 0.31 -1.1
1,128,277 + AO353_05105 0.48 -1.4
1,128,277 + AO353_05105 0.48 -2.0
1,128,278 - AO353_05105 0.48 -0.8
1,128,407 - AO353_05105 0.60 -1.9
1,128,466 + AO353_05105 0.66 +0.6
1,128,466 + AO353_05105 0.66 -0.0
1,128,466 + AO353_05105 0.66 -2.2
1,128,466 + AO353_05105 0.66 -0.4
1,128,467 - AO353_05105 0.66 -0.0
1,128,478 + AO353_05105 0.67 -1.2
1,128,478 + AO353_05105 0.67 -2.1
1,128,479 - AO353_05105 0.67 -1.2
1,128,479 - AO353_05105 0.67 -2.5
1,128,479 - AO353_05105 0.67 -2.3
1,128,479 - AO353_05105 0.67 -4.1
1,128,496 + AO353_05105 0.68 +0.2
1,128,496 + AO353_05105 0.68 -1.2
1,128,496 + AO353_05105 0.68 -1.5
1,128,603 + AO353_05105 0.79 -1.4
1,128,603 + AO353_05105 0.79 -3.2
1,128,603 + AO353_05105 0.79 -1.2
1,128,603 + AO353_05105 0.79 -1.2
1,128,603 + AO353_05105 0.79 -1.6
1,128,604 - AO353_05105 0.79 -0.9
1,128,604 - AO353_05105 0.79 +0.2
1,128,604 - AO353_05105 0.79 -1.2
1,128,604 - AO353_05105 0.79 -1.6
1,128,604 - AO353_05105 0.79 -2.1
1,128,604 - AO353_05105 0.79 +1.6
1,128,610 + AO353_05105 0.79 -3.2
1,128,610 + AO353_05105 0.79 -2.2
1,128,610 + AO353_05105 0.79 -1.0
1,128,610 + AO353_05105 0.79 -0.0
1,128,610 + AO353_05105 0.79 -2.6
1,128,610 + AO353_05105 0.79 -1.9
1,128,610 + AO353_05105 0.79 -2.2
1,128,610 + AO353_05105 0.79 -2.3
1,128,611 - AO353_05105 0.79 -0.8
1,128,611 - AO353_05105 0.79 -1.2
1,128,611 - AO353_05105 0.79 -1.0
1,128,611 - AO353_05105 0.79 -3.0
1,128,611 - AO353_05105 0.79 -1.4
1,128,611 - AO353_05105 0.79 -2.4
1,128,613 + AO353_05105 0.80 -3.5
1,128,614 - AO353_05105 0.80 -1.3
1,128,614 - AO353_05105 0.80 -2.1
1,128,614 - AO353_05105 0.80 -0.4
1,128,707 + AO353_05105 0.89 -3.0
1,128,708 - AO353_05105 0.89 -2.0
1,128,781 - -1.0
1,128,784 + -0.8
1,128,784 + +1.0
1,128,784 + -1.0
1,128,784 + +0.2
1,128,784 + -0.6
1,128,784 + -1.9
1,128,784 + -2.0
1,128,784 + -0.0
1,128,784 + -2.1
1,128,784 + -0.0
1,128,784 + -1.8
1,128,784 + -1.2
1,128,784 + -1.2
1,128,784 + -1.4
1,128,784 + -1.6
1,128,785 - -2.8
1,128,785 - +1.0
1,128,785 - +1.2
1,128,785 - -1.6
1,128,785 - -2.0
1,128,785 - -2.5
1,128,785 - +0.1
1,128,785 - -0.8
1,128,785 - -1.1
1,128,785 - +0.2
1,128,785 - -2.8
1,128,785 - +0.6
1,128,862 - -0.4
1,128,959 - -2.4
1,128,959 - -2.1
1,128,984 + AO353_05110 0.12 -2.9
1,128,984 + AO353_05110 0.12 +0.1
1,128,984 + AO353_05110 0.12 -2.5
1,128,984 + AO353_05110 0.12 -1.2
1,128,984 + AO353_05110 0.12 -0.2
1,128,984 + AO353_05110 0.12 -3.6
1,128,984 + AO353_05110 0.12 -1.3
1,128,984 + AO353_05110 0.12 -2.4
1,129,054 - AO353_05110 0.17 -2.7
1,129,075 + AO353_05110 0.18 -0.4
1,129,076 - AO353_05110 0.19 -2.2
1,129,076 - AO353_05110 0.19 -1.1
1,129,076 - AO353_05110 0.19 -2.2
1,129,076 - AO353_05110 0.19 -1.9
1,129,076 - AO353_05110 0.19 -1.9
1,129,491 + AO353_05110 0.50 -2.1
1,129,491 + AO353_05110 0.50 -3.4
1,129,491 + AO353_05110 0.50 -1.2
1,129,491 + AO353_05110 0.50 -1.8
1,129,491 + AO353_05110 0.50 -1.4
1,129,491 + AO353_05110 0.50 -1.5
1,129,491 + AO353_05110 0.50 -2.1
1,129,491 + AO353_05110 0.50 -0.8
1,129,491 + AO353_05110 0.50 -2.4
1,129,491 + AO353_05110 0.50 -1.8
1,129,491 + AO353_05110 0.50 -2.4
1,129,491 + AO353_05110 0.50 -1.5
1,129,491 + AO353_05110 0.50 -2.4
1,129,491 + AO353_05110 0.50 -1.9
1,129,491 + AO353_05110 0.50 +0.6
1,129,491 + AO353_05110 0.50 -1.5
1,129,491 + AO353_05110 0.50 -3.6
1,129,491 + AO353_05110 0.50 -1.4
1,129,491 + AO353_05110 0.50 -3.7
1,129,491 + AO353_05110 0.50 -2.2
1,129,491 + AO353_05110 0.50 -2.2
1,129,492 - AO353_05110 0.50 -1.6
1,129,492 - AO353_05110 0.50 -1.8
1,129,492 - AO353_05110 0.50 -1.2
1,129,492 - AO353_05110 0.50 -1.9
1,129,492 - AO353_05110 0.50 -2.0
1,129,492 - AO353_05110 0.50 -1.4
1,129,492 - AO353_05110 0.50 -2.0
1,129,492 - AO353_05110 0.50 -0.0
1,129,492 - AO353_05110 0.50 -1.0
1,129,492 - AO353_05110 0.50 -2.1
1,129,492 - AO353_05110 0.50 -1.6
1,129,492 - AO353_05110 0.50 -1.0
1,129,492 - AO353_05110 0.50 -0.0
1,129,492 - AO353_05110 0.50 -0.4
1,129,492 - AO353_05110 0.50 -2.0
1,129,545 + AO353_05110 0.54 -0.8
1,129,546 - AO353_05110 0.54 -1.6
1,129,750 - AO353_05110 0.69 +0.6
1,129,750 - AO353_05110 0.69 -4.1
1,129,750 - AO353_05110 0.69 -1.6
1,129,750 - AO353_05110 0.69 -1.6
1,129,812 + AO353_05110 0.74 -0.4
1,129,812 + AO353_05110 0.74 -2.9
1,129,813 - AO353_05110 0.74 -1.6
1,129,813 - AO353_05110 0.74 -0.4

Or see this region's nucleotide sequence