Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04665

Experiment: L-Arginine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04650 and AO353_04655 are separated by 3 nucleotidesAO353_04655 and AO353_04660 overlap by 4 nucleotidesAO353_04660 and AO353_04665 are separated by 152 nucleotidesAO353_04665 and AO353_04670 are separated by 349 nucleotides AO353_04650: AO353_04650 - molybdenum cofactor biosynthesis protein MoaE, at 1,003,927 to 1,004,379 _04650 AO353_04655: AO353_04655 - molybdenum cofactor biosynthesis protein MoaD, at 1,004,383 to 1,004,625 _04655 AO353_04660: AO353_04660 - molybdenum cofactor biosynthesis protein MoaC, at 1,004,622 to 1,005,095 _04660 AO353_04665: AO353_04665 - ATPase, at 1,005,248 to 1,006,639 _04665 AO353_04670: AO353_04670 - polysaccharide deacetylase, at 1,006,989 to 1,008,113 _04670 Position (kb) 1005 1006 1007Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1004.276 kb on + strand, within AO353_04650at 1004.277 kb on - strand, within AO353_04650at 1004.464 kb on - strand, within AO353_04655at 1004.725 kb on + strand, within AO353_04660at 1004.725 kb on + strand, within AO353_04660at 1004.725 kb on + strand, within AO353_04660at 1004.725 kb on + strand, within AO353_04660at 1004.725 kb on + strand, within AO353_04660at 1004.725 kb on + strand, within AO353_04660at 1004.726 kb on - strand, within AO353_04660at 1004.726 kb on - strand, within AO353_04660at 1004.726 kb on - strand, within AO353_04660at 1004.996 kb on + strand, within AO353_04660at 1004.996 kb on + strand, within AO353_04660at 1004.996 kb on + strand, within AO353_04660at 1004.996 kb on + strand, within AO353_04660at 1004.997 kb on - strand, within AO353_04660at 1004.997 kb on - strand, within AO353_04660at 1004.997 kb on - strand, within AO353_04660at 1004.997 kb on - strand, within AO353_04660at 1005.059 kb on + strandat 1005.059 kb on + strandat 1005.060 kb on - strandat 1005.060 kb on - strandat 1005.060 kb on - strandat 1005.101 kb on + strandat 1005.101 kb on + strandat 1005.102 kb on - strandat 1005.102 kb on - strandat 1005.126 kb on + strandat 1005.126 kb on + strandat 1005.180 kb on + strandat 1005.180 kb on + strandat 1005.181 kb on - strandat 1005.203 kb on + strandat 1005.203 kb on + strandat 1005.249 kb on + strandat 1005.249 kb on + strandat 1005.249 kb on + strandat 1005.249 kb on + strandat 1005.249 kb on + strandat 1005.250 kb on - strandat 1005.250 kb on - strandat 1005.250 kb on - strandat 1005.250 kb on - strandat 1005.250 kb on - strandat 1005.250 kb on - strandat 1005.250 kb on - strandat 1005.268 kb on - strandat 1005.348 kb on + strandat 1005.348 kb on + strandat 1005.349 kb on - strandat 1005.349 kb on - strandat 1005.349 kb on - strandat 1005.349 kb on - strandat 1005.379 kb on - strandat 1005.379 kb on - strandat 1005.528 kb on + strand, within AO353_04665at 1005.528 kb on + strand, within AO353_04665at 1005.528 kb on + strand, within AO353_04665at 1005.528 kb on + strand, within AO353_04665at 1005.528 kb on + strand, within AO353_04665at 1005.528 kb on + strand, within AO353_04665at 1005.528 kb on + strand, within AO353_04665at 1005.529 kb on + strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.529 kb on - strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.570 kb on + strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.571 kb on - strand, within AO353_04665at 1005.589 kb on + strand, within AO353_04665at 1005.589 kb on + strand, within AO353_04665at 1005.589 kb on + strand, within AO353_04665at 1005.589 kb on + strand, within AO353_04665at 1005.589 kb on + strand, within AO353_04665at 1005.589 kb on + strand, within AO353_04665at 1005.590 kb on - strand, within AO353_04665at 1005.590 kb on - strand, within AO353_04665at 1005.846 kb on + strand, within AO353_04665at 1005.846 kb on + strand, within AO353_04665at 1005.846 kb on + strand, within AO353_04665at 1005.846 kb on + strand, within AO353_04665at 1005.847 kb on - strand, within AO353_04665at 1005.847 kb on - strand, within AO353_04665at 1005.847 kb on - strand, within AO353_04665at 1005.864 kb on + strand, within AO353_04665at 1005.864 kb on + strand, within AO353_04665at 1005.864 kb on + strand, within AO353_04665at 1005.864 kb on + strand, within AO353_04665at 1005.864 kb on + strand, within AO353_04665at 1005.864 kb on + strand, within AO353_04665at 1005.865 kb on - strand, within AO353_04665at 1005.865 kb on - strand, within AO353_04665at 1005.865 kb on - strand, within AO353_04665at 1005.865 kb on - strand, within AO353_04665at 1005.865 kb on - strand, within AO353_04665at 1006.003 kb on + strand, within AO353_04665at 1006.003 kb on + strand, within AO353_04665at 1006.003 kb on + strand, within AO353_04665at 1006.003 kb on + strand, within AO353_04665at 1006.004 kb on - strand, within AO353_04665at 1006.004 kb on - strand, within AO353_04665at 1006.004 kb on - strand, within AO353_04665at 1006.164 kb on + strand, within AO353_04665at 1006.164 kb on + strand, within AO353_04665at 1006.164 kb on + strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.165 kb on - strand, within AO353_04665at 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.577 kb on + strandat 1006.578 kb on - strandat 1006.578 kb on - strandat 1006.578 kb on - strandat 1006.578 kb on - strandat 1006.592 kb on + strandat 1006.592 kb on + strandat 1006.592 kb on + strandat 1006.592 kb on + strandat 1006.592 kb on + strandat 1006.593 kb on - strandat 1006.593 kb on - strandat 1006.593 kb on - strandat 1006.593 kb on - strandat 1006.593 kb on - strandat 1006.596 kb on + strandat 1006.596 kb on + strandat 1006.596 kb on + strandat 1006.596 kb on + strandat 1006.596 kb on + strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.597 kb on - strandat 1006.621 kb on + strandat 1006.621 kb on + strandat 1006.622 kb on - strandat 1006.622 kb on - strandat 1006.622 kb on - strandat 1006.639 kb on + strandat 1006.640 kb on - strandat 1006.640 kb on - strandat 1006.674 kb on + strandat 1006.675 kb on - strandat 1006.675 kb on - strandat 1006.675 kb on - strandat 1006.675 kb on - strandat 1006.675 kb on - strandat 1006.813 kb on + strandat 1006.813 kb on + strandat 1006.813 kb on + strandat 1006.813 kb on + strandat 1006.813 kb on + strandat 1006.814 kb on - strandat 1006.814 kb on - strandat 1006.816 kb on + strandat 1006.816 kb on + strandat 1006.817 kb on - strandat 1006.817 kb on - strandat 1006.867 kb on - strandat 1006.914 kb on + strandat 1006.938 kb on + strandat 1006.938 kb on + strandat 1006.938 kb on + strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.939 kb on - strandat 1006.974 kb on - strandat 1007.333 kb on - strand, within AO353_04670at 1007.333 kb on - strand, within AO353_04670at 1007.333 kb on - strand, within AO353_04670at 1007.401 kb on + strand, within AO353_04670at 1007.401 kb on + strand, within AO353_04670at 1007.401 kb on + strand, within AO353_04670at 1007.401 kb on + strand, within AO353_04670at 1007.402 kb on - strand, within AO353_04670at 1007.402 kb on - strand, within AO353_04670at 1007.402 kb on - strand, within AO353_04670at 1007.402 kb on - strand, within AO353_04670at 1007.500 kb on + strand, within AO353_04670at 1007.500 kb on + strand, within AO353_04670at 1007.500 kb on + strand, within AO353_04670at 1007.500 kb on + strand, within AO353_04670at 1007.501 kb on - strand, within AO353_04670at 1007.600 kb on - strand, within AO353_04670at 1007.600 kb on - strand, within AO353_04670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (C)
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1,004,276 + AO353_04650 0.77 +1.3
1,004,277 - AO353_04650 0.77 -0.8
1,004,464 - AO353_04655 0.33 +1.3
1,004,725 + AO353_04660 0.22 -0.9
1,004,725 + AO353_04660 0.22 -0.3
1,004,725 + AO353_04660 0.22 +0.9
1,004,725 + AO353_04660 0.22 +1.0
1,004,725 + AO353_04660 0.22 +0.1
1,004,725 + AO353_04660 0.22 -0.1
1,004,726 - AO353_04660 0.22 +0.8
1,004,726 - AO353_04660 0.22 -2.0
1,004,726 - AO353_04660 0.22 +0.5
1,004,996 + AO353_04660 0.79 -0.5
1,004,996 + AO353_04660 0.79 -0.3
1,004,996 + AO353_04660 0.79 +0.0
1,004,996 + AO353_04660 0.79 -0.4
1,004,997 - AO353_04660 0.79 -1.6
1,004,997 - AO353_04660 0.79 +0.5
1,004,997 - AO353_04660 0.79 -0.8
1,004,997 - AO353_04660 0.79 -0.3
1,005,059 + -0.5
1,005,059 + -0.8
1,005,060 - +0.5
1,005,060 - -0.8
1,005,060 - +0.3
1,005,101 + -0.0
1,005,101 + -0.1
1,005,102 - -0.3
1,005,102 - -0.3
1,005,126 + -0.6
1,005,126 + -1.0
1,005,180 + -1.0
1,005,180 + -0.7
1,005,181 - -0.9
1,005,203 + +1.5
1,005,203 + -0.8
1,005,249 + -0.5
1,005,249 + -0.0
1,005,249 + +0.2
1,005,249 + +0.3
1,005,249 + -0.5
1,005,250 - -1.3
1,005,250 - +0.1
1,005,250 - +0.5
1,005,250 - +0.6
1,005,250 - -2.6
1,005,250 - -0.1
1,005,250 - -0.8
1,005,268 - -0.5
1,005,348 + -0.8
1,005,348 + +0.5
1,005,349 - -2.0
1,005,349 - -1.8
1,005,349 - +0.1
1,005,349 - -1.6
1,005,379 - -0.6
1,005,379 - -2.7
1,005,528 + AO353_04665 0.20 -2.7
1,005,528 + AO353_04665 0.20 -0.8
1,005,528 + AO353_04665 0.20 +1.3
1,005,528 + AO353_04665 0.20 -0.5
1,005,528 + AO353_04665 0.20 -0.3
1,005,528 + AO353_04665 0.20 +1.0
1,005,528 + AO353_04665 0.20 -1.6
1,005,529 + AO353_04665 0.20 +0.4
1,005,529 - AO353_04665 0.20 -0.7
1,005,529 - AO353_04665 0.20 +1.0
1,005,529 - AO353_04665 0.20 -2.6
1,005,529 - AO353_04665 0.20 -1.0
1,005,529 - AO353_04665 0.20 -1.6
1,005,529 - AO353_04665 0.20 +0.2
1,005,529 - AO353_04665 0.20 -0.8
1,005,529 - AO353_04665 0.20 -1.2
1,005,529 - AO353_04665 0.20 -0.8
1,005,529 - AO353_04665 0.20 -1.8
1,005,529 - AO353_04665 0.20 +0.8
1,005,529 - AO353_04665 0.20 -2.5
1,005,570 + AO353_04665 0.23 -1.7
1,005,570 + AO353_04665 0.23 -2.3
1,005,570 + AO353_04665 0.23 -2.1
1,005,570 + AO353_04665 0.23 -0.8
1,005,570 + AO353_04665 0.23 +0.1
1,005,570 + AO353_04665 0.23 -1.8
1,005,570 + AO353_04665 0.23 +1.2
1,005,570 + AO353_04665 0.23 -0.2
1,005,570 + AO353_04665 0.23 +0.5
1,005,570 + AO353_04665 0.23 -0.8
1,005,570 + AO353_04665 0.23 +0.8
1,005,571 - AO353_04665 0.23 -2.4
1,005,571 - AO353_04665 0.23 +0.2
1,005,571 - AO353_04665 0.23 -0.6
1,005,571 - AO353_04665 0.23 -0.3
1,005,571 - AO353_04665 0.23 -0.3
1,005,571 - AO353_04665 0.23 -0.5
1,005,571 - AO353_04665 0.23 +0.2
1,005,571 - AO353_04665 0.23 +0.2
1,005,571 - AO353_04665 0.23 -0.0
1,005,571 - AO353_04665 0.23 +0.2
1,005,571 - AO353_04665 0.23 -0.9
1,005,589 + AO353_04665 0.24 -1.8
1,005,589 + AO353_04665 0.24 -2.0
1,005,589 + AO353_04665 0.24 -2.0
1,005,589 + AO353_04665 0.24 -0.2
1,005,589 + AO353_04665 0.24 -0.6
1,005,589 + AO353_04665 0.24 -1.4
1,005,590 - AO353_04665 0.25 -1.6
1,005,590 - AO353_04665 0.25 +0.5
1,005,846 + AO353_04665 0.43 -2.0
1,005,846 + AO353_04665 0.43 -0.3
1,005,846 + AO353_04665 0.43 -0.0
1,005,846 + AO353_04665 0.43 -1.0
1,005,847 - AO353_04665 0.43 -0.5
1,005,847 - AO353_04665 0.43 -0.0
1,005,847 - AO353_04665 0.43 -1.9
1,005,864 + AO353_04665 0.44 +0.1
1,005,864 + AO353_04665 0.44 -0.9
1,005,864 + AO353_04665 0.44 +0.3
1,005,864 + AO353_04665 0.44 -2.0
1,005,864 + AO353_04665 0.44 -0.5
1,005,864 + AO353_04665 0.44 -1.5
1,005,865 - AO353_04665 0.44 -1.8
1,005,865 - AO353_04665 0.44 -2.4
1,005,865 - AO353_04665 0.44 -1.3
1,005,865 - AO353_04665 0.44 -1.9
1,005,865 - AO353_04665 0.44 -0.3
1,006,003 + AO353_04665 0.54 -0.8
1,006,003 + AO353_04665 0.54 -2.4
1,006,003 + AO353_04665 0.54 +0.1
1,006,003 + AO353_04665 0.54 -1.0
1,006,004 - AO353_04665 0.54 -1.2
1,006,004 - AO353_04665 0.54 -2.4
1,006,004 - AO353_04665 0.54 -1.5
1,006,164 + AO353_04665 0.66 +0.2
1,006,164 + AO353_04665 0.66 -1.5
1,006,164 + AO353_04665 0.66 -1.4
1,006,165 - AO353_04665 0.66 +1.0
1,006,165 - AO353_04665 0.66 +0.2
1,006,165 - AO353_04665 0.66 -0.5
1,006,165 - AO353_04665 0.66 -0.5
1,006,165 - AO353_04665 0.66 -2.2
1,006,577 + -1.5
1,006,577 + -0.7
1,006,577 + -1.2
1,006,577 + -0.2
1,006,577 + +2.1
1,006,577 + -0.3
1,006,577 + -0.6
1,006,577 + -1.8
1,006,577 + -0.9
1,006,577 + -0.5
1,006,577 + -1.6
1,006,577 + -0.3
1,006,577 + -1.5
1,006,578 - -1.9
1,006,578 - -0.5
1,006,578 - -1.4
1,006,578 - -1.3
1,006,592 + +0.1
1,006,592 + -0.8
1,006,592 + -0.6
1,006,592 + -0.8
1,006,592 + -0.8
1,006,593 - -0.3
1,006,593 - -0.9
1,006,593 - -0.5
1,006,593 - -0.3
1,006,593 - -2.7
1,006,596 + -2.1
1,006,596 + +0.5
1,006,596 + -1.5
1,006,596 + -1.0
1,006,596 + -2.3
1,006,597 - -0.6
1,006,597 - -1.2
1,006,597 - -0.6
1,006,597 - -0.4
1,006,597 - +1.1
1,006,597 - -1.0
1,006,597 - +0.3
1,006,597 - -1.6
1,006,597 - -0.6
1,006,597 - +0.1
1,006,597 - -0.5
1,006,597 - -1.0
1,006,597 - +0.1
1,006,621 + +1.1
1,006,621 + -2.5
1,006,622 - -0.6
1,006,622 - -0.3
1,006,622 - -2.4
1,006,639 + -0.7
1,006,640 - -1.2
1,006,640 - -2.2
1,006,674 + -1.2
1,006,675 - -1.9
1,006,675 - -0.8
1,006,675 - +0.4
1,006,675 - +1.5
1,006,675 - -0.8
1,006,813 + -3.2
1,006,813 + -1.8
1,006,813 + -0.9
1,006,813 + -0.5
1,006,813 + -0.8
1,006,814 - -0.9
1,006,814 - +1.1
1,006,816 + +0.2
1,006,816 + -1.8
1,006,817 - -0.8
1,006,817 - -1.6
1,006,867 - -1.0
1,006,914 + -0.9
1,006,938 + +0.2
1,006,938 + -0.0
1,006,938 + +0.0
1,006,939 - -1.0
1,006,939 - -0.7
1,006,939 - -0.5
1,006,939 - -0.8
1,006,939 - +1.0
1,006,939 - -2.2
1,006,939 - -1.3
1,006,974 - -1.5
1,007,333 - AO353_04670 0.31 -0.5
1,007,333 - AO353_04670 0.31 -0.0
1,007,333 - AO353_04670 0.31 +1.1
1,007,401 + AO353_04670 0.37 +0.0
1,007,401 + AO353_04670 0.37 -0.1
1,007,401 + AO353_04670 0.37 +2.1
1,007,401 + AO353_04670 0.37 -1.1
1,007,402 - AO353_04670 0.37 -0.2
1,007,402 - AO353_04670 0.37 -0.8
1,007,402 - AO353_04670 0.37 +0.1
1,007,402 - AO353_04670 0.37 +0.4
1,007,500 + AO353_04670 0.45 +0.9
1,007,500 + AO353_04670 0.45 +0.5
1,007,500 + AO353_04670 0.45 +0.8
1,007,500 + AO353_04670 0.45 +0.3
1,007,501 - AO353_04670 0.46 -0.2
1,007,600 - AO353_04670 0.54 -0.9
1,007,600 - AO353_04670 0.54 -0.5

Or see this region's nucleotide sequence