Experiment: L-Arginine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02590 and AO353_02595 are separated by 82 nucleotides AO353_02595 and AO353_02600 are separated by 2 nucleotides AO353_02600 and AO353_02605 overlap by 4 nucleotides
AO353_02590: AO353_02590 - MarR family transcriptional regulator, at 553,985 to 554,389
_02590
AO353_02595: AO353_02595 - cobalamin synthase, at 554,472 to 555,203
_02595
AO353_02600: AO353_02600 - alpha-ribazole phosphatase, at 555,206 to 555,781
_02600
AO353_02605: AO353_02605 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 555,778 to 556,833
_02605
Position (kb) 555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.283 kb on + strand, within AO353_02590 at 554.283 kb on + strand, within AO353_02590 at 554.283 kb on + strand, within AO353_02590 at 554.284 kb on - strand, within AO353_02590 at 554.325 kb on + strand, within AO353_02590 at 554.326 kb on - strand, within AO353_02590 at 554.369 kb on + strand at 554.369 kb on + strand at 554.370 kb on - strand at 554.370 kb on - strand at 554.385 kb on - strand at 554.385 kb on - strand at 554.385 kb on - strand at 554.398 kb on + strand at 554.399 kb on - strand at 554.399 kb on - strand at 554.399 kb on - strand at 554.399 kb on - strand at 554.400 kb on + strand at 554.400 kb on + strand at 554.401 kb on - strand at 554.401 kb on - strand at 554.418 kb on - strand at 554.418 kb on - strand at 554.418 kb on - strand at 554.735 kb on - strand, within AO353_02595 at 554.735 kb on - strand, within AO353_02595 at 554.804 kb on + strand, within AO353_02595 at 554.805 kb on - strand, within AO353_02595 at 554.805 kb on - strand, within AO353_02595 at 554.805 kb on - strand, within AO353_02595 at 555.103 kb on + strand, within AO353_02595 at 555.103 kb on + strand, within AO353_02595 at 555.373 kb on - strand, within AO353_02600 at 555.373 kb on - strand, within AO353_02600 at 555.373 kb on - strand, within AO353_02600 at 555.373 kb on - strand, within AO353_02600 at 555.373 kb on - strand, within AO353_02600 at 555.937 kb on + strand, within AO353_02605 at 555.937 kb on + strand, within AO353_02605 at 555.937 kb on + strand, within AO353_02605 at 555.937 kb on + strand, within AO353_02605 at 555.937 kb on + strand, within AO353_02605 at 555.937 kb on + strand, within AO353_02605 at 555.937 kb on + strand, within AO353_02605 at 555.938 kb on - strand, within AO353_02605 at 555.938 kb on - strand, within AO353_02605 at 556.038 kb on + strand, within AO353_02605 at 556.038 kb on + strand, within AO353_02605 at 556.038 kb on + strand, within AO353_02605 at 556.038 kb on + strand, within AO353_02605 at 556.038 kb on + strand, within AO353_02605 at 556.038 kb on + strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.039 kb on - strand, within AO353_02605 at 556.085 kb on + strand, within AO353_02605 at 556.086 kb on - strand, within AO353_02605 at 556.198 kb on - strand, within AO353_02605 at 556.296 kb on + strand, within AO353_02605 at 556.296 kb on + strand, within AO353_02605 at 556.296 kb on + strand, within AO353_02605 at 556.296 kb on + strand, within AO353_02605 at 556.323 kb on + strand, within AO353_02605 at 556.378 kb on + strand, within AO353_02605 at 556.379 kb on - strand, within AO353_02605 at 556.379 kb on - strand, within AO353_02605
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (C) remove 554,283 + AO353_02590 0.74 +0.0 554,283 + AO353_02590 0.74 -0.1 554,283 + AO353_02590 0.74 +0.9 554,284 - AO353_02590 0.74 +0.3 554,325 + AO353_02590 0.84 -0.4 554,326 - AO353_02590 0.84 -1.1 554,369 + -0.8 554,369 + -0.5 554,370 - -0.3 554,370 - -0.3 554,385 - -0.9 554,385 - -0.1 554,385 - -1.1 554,398 + +0.1 554,399 - -0.4 554,399 - -0.1 554,399 - +1.4 554,399 - -1.4 554,400 + +0.4 554,400 + +0.8 554,401 - +0.1 554,401 - +0.0 554,418 - +0.5 554,418 - -1.4 554,418 - -0.7 554,735 - AO353_02595 0.36 +1.1 554,735 - AO353_02595 0.36 +0.5 554,804 + AO353_02595 0.45 -1.0 554,805 - AO353_02595 0.45 -1.7 554,805 - AO353_02595 0.45 -0.1 554,805 - AO353_02595 0.45 -0.3 555,103 + AO353_02595 0.86 -0.1 555,103 + AO353_02595 0.86 -1.0 555,373 - AO353_02600 0.29 -0.1 555,373 - AO353_02600 0.29 +1.9 555,373 - AO353_02600 0.29 -0.7 555,373 - AO353_02600 0.29 +1.1 555,373 - AO353_02600 0.29 +1.4 555,937 + AO353_02605 0.15 -0.6 555,937 + AO353_02605 0.15 +0.4 555,937 + AO353_02605 0.15 -1.1 555,937 + AO353_02605 0.15 +1.4 555,937 + AO353_02605 0.15 +0.6 555,937 + AO353_02605 0.15 +1.8 555,937 + AO353_02605 0.15 -0.1 555,938 - AO353_02605 0.15 -0.7 555,938 - AO353_02605 0.15 +1.4 556,038 + AO353_02605 0.25 -1.6 556,038 + AO353_02605 0.25 +0.4 556,038 + AO353_02605 0.25 +1.2 556,038 + AO353_02605 0.25 +0.1 556,038 + AO353_02605 0.25 +0.3 556,038 + AO353_02605 0.25 -0.2 556,039 - AO353_02605 0.25 -0.8 556,039 - AO353_02605 0.25 +1.4 556,039 - AO353_02605 0.25 -0.4 556,039 - AO353_02605 0.25 -1.7 556,039 - AO353_02605 0.25 -1.9 556,039 - AO353_02605 0.25 -1.4 556,039 - AO353_02605 0.25 -1.6 556,039 - AO353_02605 0.25 -0.0 556,039 - AO353_02605 0.25 +1.8 556,085 + AO353_02605 0.29 +1.4 556,086 - AO353_02605 0.29 +0.4 556,198 - AO353_02605 0.40 -0.2 556,296 + AO353_02605 0.49 -0.5 556,296 + AO353_02605 0.49 +0.4 556,296 + AO353_02605 0.49 -1.6 556,296 + AO353_02605 0.49 -0.1 556,323 + AO353_02605 0.52 -0.6 556,378 + AO353_02605 0.57 -0.7 556,379 - AO353_02605 0.57 +0.3 556,379 - AO353_02605 0.57 +0.7
Or see this region's nucleotide sequence