Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17075

Experiment: 1,2-Propanediol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17065 and ABZR87_RS17070 are separated by 12 nucleotidesABZR87_RS17070 and ABZR87_RS17075 are separated by 160 nucleotidesABZR87_RS17075 and ABZR87_RS17080 are separated by 172 nucleotidesABZR87_RS17080 and ABZR87_RS17085 are separated by 96 nucleotides ABZR87_RS17065: ABZR87_RS17065 - hypothetical protein, at 177,876 to 178,208 _RS17065 ABZR87_RS17070: ABZR87_RS17070 - alpha/beta hydrolase, at 178,221 to 179,030 _RS17070 ABZR87_RS17075: ABZR87_RS17075 - acyl-CoA thioesterase, at 179,191 to 179,694 _RS17075 ABZR87_RS17080: ABZR87_RS17080 - DUF2946 family protein, at 179,867 to 180,262 _RS17080 ABZR87_RS17085: ABZR87_RS17085 - hypothetical protein, at 180,359 to 180,715 _RS17085 Position (kb) 179 180Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 178.209 kb on + strandat 178.209 kb on + strandat 178.210 kb on - strandat 178.210 kb on - strandat 178.210 kb on - strandat 178.329 kb on + strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.386 kb on - strand, within ABZR87_RS17070at 178.491 kb on + strand, within ABZR87_RS17070at 178.491 kb on + strand, within ABZR87_RS17070at 178.491 kb on + strand, within ABZR87_RS17070at 178.491 kb on + strand, within ABZR87_RS17070at 178.492 kb on - strand, within ABZR87_RS17070at 178.497 kb on + strand, within ABZR87_RS17070at 178.498 kb on - strand, within ABZR87_RS17070at 178.498 kb on - strand, within ABZR87_RS17070at 178.728 kb on + strand, within ABZR87_RS17070at 178.729 kb on - strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.899 kb on + strand, within ABZR87_RS17070at 178.900 kb on - strand, within ABZR87_RS17070at 178.900 kb on - strand, within ABZR87_RS17070at 178.900 kb on - strand, within ABZR87_RS17070at 179.028 kb on + strandat 179.073 kb on + strandat 179.074 kb on - strandat 179.085 kb on + strandat 179.085 kb on + strandat 179.137 kb on + strandat 179.137 kb on + strandat 179.138 kb on - strandat 179.192 kb on + strandat 179.193 kb on - strandat 179.193 kb on - strandat 179.193 kb on - strandat 179.216 kb on + strandat 179.217 kb on - strandat 179.217 kb on - strandat 179.375 kb on + strand, within ABZR87_RS17075at 179.376 kb on - strand, within ABZR87_RS17075at 179.376 kb on - strand, within ABZR87_RS17075at 179.376 kb on - strand, within ABZR87_RS17075at 179.388 kb on + strand, within ABZR87_RS17075at 179.388 kb on + strand, within ABZR87_RS17075at 179.388 kb on + strand, within ABZR87_RS17075at 179.462 kb on + strand, within ABZR87_RS17075at 179.462 kb on + strand, within ABZR87_RS17075at 179.462 kb on + strand, within ABZR87_RS17075at 179.463 kb on - strand, within ABZR87_RS17075at 179.463 kb on - strand, within ABZR87_RS17075at 179.463 kb on - strand, within ABZR87_RS17075at 179.550 kb on - strand, within ABZR87_RS17075at 179.550 kb on - strand, within ABZR87_RS17075at 179.579 kb on + strand, within ABZR87_RS17075at 179.579 kb on + strand, within ABZR87_RS17075at 179.580 kb on - strand, within ABZR87_RS17075at 179.580 kb on - strand, within ABZR87_RS17075at 179.580 kb on - strand, within ABZR87_RS17075at 179.620 kb on + strand, within ABZR87_RS17075at 179.620 kb on + strand, within ABZR87_RS17075at 179.620 kb on + strand, within ABZR87_RS17075at 179.620 kb on + strand, within ABZR87_RS17075at 179.688 kb on + strandat 179.689 kb on - strandat 179.689 kb on - strandat 179.689 kb on - strandat 179.819 kb on - strandat 179.823 kb on + strandat 179.823 kb on + strandat 179.823 kb on + strandat 179.824 kb on - strandat 180.008 kb on - strand, within ABZR87_RS17080at 180.015 kb on + strand, within ABZR87_RS17080at 180.280 kb on + strandat 180.280 kb on + strandat 180.280 kb on + strandat 180.280 kb on + strandat 180.281 kb on - strandat 180.281 kb on - strandat 180.330 kb on + strandat 180.330 kb on + strandat 180.331 kb on - strandat 180.331 kb on - strandat 180.382 kb on - strandat 180.417 kb on + strand, within ABZR87_RS17085at 180.536 kb on + strand, within ABZR87_RS17085at 180.537 kb on - strand, within ABZR87_RS17085at 180.537 kb on - strand, within ABZR87_RS17085at 180.546 kb on - strand, within ABZR87_RS17085

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Per-strain Table

Position Strand Gene LocusTag Fraction 1,2-Propanediol (C)
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178,209 + +0.8
178,209 + -0.3
178,210 - -1.2
178,210 - +0.2
178,210 - -0.5
178,329 + ABZR87_RS17070 0.13 -0.6
178,330 - ABZR87_RS17070 0.13 +0.4
178,330 - ABZR87_RS17070 0.13 +0.6
178,330 - ABZR87_RS17070 0.13 -0.3
178,330 - ABZR87_RS17070 0.13 +0.1
178,330 - ABZR87_RS17070 0.13 -0.5
178,386 - ABZR87_RS17070 0.20 -0.1
178,491 + ABZR87_RS17070 0.33 +0.2
178,491 + ABZR87_RS17070 0.33 -2.5
178,491 + ABZR87_RS17070 0.33 -0.7
178,491 + ABZR87_RS17070 0.33 -0.8
178,492 - ABZR87_RS17070 0.33 -0.6
178,497 + ABZR87_RS17070 0.34 +0.1
178,498 - ABZR87_RS17070 0.34 +1.4
178,498 - ABZR87_RS17070 0.34 +0.4
178,728 + ABZR87_RS17070 0.63 -0.1
178,729 - ABZR87_RS17070 0.63 -0.0
178,899 + ABZR87_RS17070 0.84 +0.6
178,899 + ABZR87_RS17070 0.84 -0.7
178,899 + ABZR87_RS17070 0.84 -0.1
178,899 + ABZR87_RS17070 0.84 +0.6
178,899 + ABZR87_RS17070 0.84 +0.1
178,900 - ABZR87_RS17070 0.84 -1.4
178,900 - ABZR87_RS17070 0.84 +0.1
178,900 - ABZR87_RS17070 0.84 +0.1
179,028 + -0.7
179,073 + -0.1
179,074 - +0.2
179,085 + -0.4
179,085 + -0.1
179,137 + -0.2
179,137 + +0.2
179,138 - -0.5
179,192 + -0.7
179,193 - +0.3
179,193 - -1.3
179,193 - -0.6
179,216 + -0.9
179,217 - -0.9
179,217 - -0.6
179,375 + ABZR87_RS17075 0.37 -1.1
179,376 - ABZR87_RS17075 0.37 -0.4
179,376 - ABZR87_RS17075 0.37 -0.4
179,376 - ABZR87_RS17075 0.37 -1.8
179,388 + ABZR87_RS17075 0.39 -1.1
179,388 + ABZR87_RS17075 0.39 -0.3
179,388 + ABZR87_RS17075 0.39 -1.5
179,462 + ABZR87_RS17075 0.54 -1.1
179,462 + ABZR87_RS17075 0.54 -0.5
179,462 + ABZR87_RS17075 0.54 -0.3
179,463 - ABZR87_RS17075 0.54 -1.5
179,463 - ABZR87_RS17075 0.54 -0.6
179,463 - ABZR87_RS17075 0.54 +0.3
179,550 - ABZR87_RS17075 0.71 -1.2
179,550 - ABZR87_RS17075 0.71 -1.8
179,579 + ABZR87_RS17075 0.77 -0.4
179,579 + ABZR87_RS17075 0.77 -0.5
179,580 - ABZR87_RS17075 0.77 -1.9
179,580 - ABZR87_RS17075 0.77 -0.4
179,580 - ABZR87_RS17075 0.77 -0.5
179,620 + ABZR87_RS17075 0.85 -1.7
179,620 + ABZR87_RS17075 0.85 +0.5
179,620 + ABZR87_RS17075 0.85 -0.9
179,620 + ABZR87_RS17075 0.85 -0.5
179,688 + -0.9
179,689 - -1.3
179,689 - -3.3
179,689 - -1.4
179,819 - -0.3
179,823 + +0.4
179,823 + +0.3
179,823 + +0.0
179,824 - +2.7
180,008 - ABZR87_RS17080 0.36 -0.2
180,015 + ABZR87_RS17080 0.37 +0.8
180,280 + +0.4
180,280 + +1.4
180,280 + +0.2
180,280 + +0.4
180,281 - +0.4
180,281 - +0.1
180,330 + +0.1
180,330 + +1.0
180,331 - +0.3
180,331 - +0.5
180,382 - +0.6
180,417 + ABZR87_RS17085 0.16 +0.4
180,536 + ABZR87_RS17085 0.50 +0.1
180,537 - ABZR87_RS17085 0.50 +0.9
180,537 - ABZR87_RS17085 0.50 -0.8
180,546 - ABZR87_RS17085 0.52 +0.7

Or see this region's nucleotide sequence