Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01600

Experiment: 1,2-Propanediol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01595 and ABZR87_RS01600 are separated by 12 nucleotidesABZR87_RS01600 and ABZR87_RS01605 are separated by 20 nucleotidesABZR87_RS01605 and ABZR87_RS01610 are separated by 11 nucleotides ABZR87_RS01595: ABZR87_RS01595 - magnesium/cobalt transporter CorA, at 335,271 to 336,233 _RS01595 ABZR87_RS01600: ABZR87_RS01600 - monofunctional biosynthetic peptidoglycan transglycosylase, at 336,246 to 336,950 _RS01600 ABZR87_RS01605: ABZR87_RS01605 - shikimate dehydrogenase, at 336,971 to 337,888 _RS01605 ABZR87_RS01610: ABZR87_RS01610 - energy transducer TonB, at 337,900 to 338,814 _RS01610 Position (kb) 336 337Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 335.412 kb on + strand, within ABZR87_RS01595at 335.412 kb on + strand, within ABZR87_RS01595at 335.412 kb on + strand, within ABZR87_RS01595at 335.413 kb on - strand, within ABZR87_RS01595at 335.413 kb on - strand, within ABZR87_RS01595at 335.413 kb on - strand, within ABZR87_RS01595at 335.469 kb on + strand, within ABZR87_RS01595at 335.470 kb on - strand, within ABZR87_RS01595at 335.470 kb on - strand, within ABZR87_RS01595at 335.685 kb on + strand, within ABZR87_RS01595at 335.685 kb on + strand, within ABZR87_RS01595at 335.686 kb on - strand, within ABZR87_RS01595at 335.686 kb on - strand, within ABZR87_RS01595at 335.686 kb on - strand, within ABZR87_RS01595at 335.703 kb on + strand, within ABZR87_RS01595at 335.704 kb on - strand, within ABZR87_RS01595at 335.861 kb on + strand, within ABZR87_RS01595at 336.105 kb on + strand, within ABZR87_RS01595at 336.105 kb on + strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.106 kb on - strand, within ABZR87_RS01595at 336.204 kb on + strandat 336.205 kb on - strandat 336.205 kb on - strandat 336.205 kb on - strandat 336.309 kb on + strandat 336.309 kb on + strandat 336.310 kb on - strandat 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.328 kb on + strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.329 kb on - strand, within ABZR87_RS01600at 336.390 kb on + strand, within ABZR87_RS01600at 336.391 kb on - strand, within ABZR87_RS01600at 336.391 kb on - strand, within ABZR87_RS01600at 336.421 kb on + strand, within ABZR87_RS01600at 336.421 kb on + strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.422 kb on - strand, within ABZR87_RS01600at 336.481 kb on + strand, within ABZR87_RS01600at 336.481 kb on + strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.482 kb on - strand, within ABZR87_RS01600at 336.559 kb on + strand, within ABZR87_RS01600at 336.560 kb on - strand, within ABZR87_RS01600at 336.757 kb on + strand, within ABZR87_RS01600at 336.758 kb on - strand, within ABZR87_RS01600at 336.758 kb on - strand, within ABZR87_RS01600at 336.886 kb on + strandat 336.886 kb on + strandat 336.887 kb on - strandat 336.931 kb on + strandat 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.173 kb on + strand, within ABZR87_RS01605at 337.174 kb on - strand, within ABZR87_RS01605at 337.174 kb on - strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.185 kb on + strand, within ABZR87_RS01605at 337.186 kb on - strand, within ABZR87_RS01605at 337.302 kb on + strand, within ABZR87_RS01605at 337.632 kb on + strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.633 kb on - strand, within ABZR87_RS01605at 337.728 kb on + strand, within ABZR87_RS01605at 337.740 kb on + strand, within ABZR87_RS01605at 337.827 kb on + strandat 337.827 kb on + strandat 337.827 kb on + strandat 337.828 kb on - strandat 337.828 kb on - strandat 337.828 kb on - strandat 337.828 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1,2-Propanediol (C)
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335,412 + ABZR87_RS01595 0.15 +1.0
335,412 + ABZR87_RS01595 0.15 +0.6
335,412 + ABZR87_RS01595 0.15 -0.3
335,413 - ABZR87_RS01595 0.15 +0.6
335,413 - ABZR87_RS01595 0.15 -0.5
335,413 - ABZR87_RS01595 0.15 -0.4
335,469 + ABZR87_RS01595 0.21 -0.2
335,470 - ABZR87_RS01595 0.21 -0.4
335,470 - ABZR87_RS01595 0.21 +0.1
335,685 + ABZR87_RS01595 0.43 -0.1
335,685 + ABZR87_RS01595 0.43 +0.3
335,686 - ABZR87_RS01595 0.43 -0.6
335,686 - ABZR87_RS01595 0.43 -0.1
335,686 - ABZR87_RS01595 0.43 -0.1
335,703 + ABZR87_RS01595 0.45 -0.6
335,704 - ABZR87_RS01595 0.45 +0.5
335,861 + ABZR87_RS01595 0.61 +0.2
336,105 + ABZR87_RS01595 0.87 +0.9
336,105 + ABZR87_RS01595 0.87 -0.1
336,106 - ABZR87_RS01595 0.87 -0.2
336,106 - ABZR87_RS01595 0.87 +0.2
336,106 - ABZR87_RS01595 0.87 +0.6
336,204 + -0.3
336,205 - +0.3
336,205 - +0.4
336,205 - -0.2
336,309 + +1.3
336,309 + -0.1
336,310 - +0.1
336,328 + ABZR87_RS01600 0.12 -0.1
336,328 + ABZR87_RS01600 0.12 +0.5
336,328 + ABZR87_RS01600 0.12 -2.3
336,328 + ABZR87_RS01600 0.12 +0.1
336,328 + ABZR87_RS01600 0.12 -0.2
336,328 + ABZR87_RS01600 0.12 +1.5
336,328 + ABZR87_RS01600 0.12 +0.8
336,328 + ABZR87_RS01600 0.12 -0.2
336,329 - ABZR87_RS01600 0.12 +0.7
336,329 - ABZR87_RS01600 0.12 -0.6
336,329 - ABZR87_RS01600 0.12 -0.1
336,329 - ABZR87_RS01600 0.12 +0.4
336,329 - ABZR87_RS01600 0.12 +0.5
336,329 - ABZR87_RS01600 0.12 -0.2
336,329 - ABZR87_RS01600 0.12 +0.5
336,390 + ABZR87_RS01600 0.20 -0.1
336,391 - ABZR87_RS01600 0.21 -0.0
336,391 - ABZR87_RS01600 0.21 -1.3
336,421 + ABZR87_RS01600 0.25 -0.7
336,421 + ABZR87_RS01600 0.25 +0.0
336,422 - ABZR87_RS01600 0.25 -0.3
336,422 - ABZR87_RS01600 0.25 +0.6
336,422 - ABZR87_RS01600 0.25 +0.9
336,481 + ABZR87_RS01600 0.33 +0.2
336,481 + ABZR87_RS01600 0.33 +0.2
336,482 - ABZR87_RS01600 0.33 +0.4
336,482 - ABZR87_RS01600 0.33 -0.2
336,482 - ABZR87_RS01600 0.33 -0.3
336,482 - ABZR87_RS01600 0.33 -0.2
336,559 + ABZR87_RS01600 0.44 +0.1
336,560 - ABZR87_RS01600 0.45 +0.6
336,757 + ABZR87_RS01600 0.72 +0.0
336,758 - ABZR87_RS01600 0.73 -1.7
336,758 - ABZR87_RS01600 0.73 -0.4
336,886 + +1.0
336,886 + -0.2
336,887 - -0.4
336,931 + +0.3
337,173 + ABZR87_RS01605 0.22 -3.7
337,173 + ABZR87_RS01605 0.22 -2.7
337,173 + ABZR87_RS01605 0.22 -3.2
337,173 + ABZR87_RS01605 0.22 -4.0
337,173 + ABZR87_RS01605 0.22 -3.1
337,173 + ABZR87_RS01605 0.22 -3.4
337,173 + ABZR87_RS01605 0.22 -3.2
337,173 + ABZR87_RS01605 0.22 -3.7
337,173 + ABZR87_RS01605 0.22 -4.0
337,173 + ABZR87_RS01605 0.22 -3.4
337,174 - ABZR87_RS01605 0.22 -4.0
337,174 - ABZR87_RS01605 0.22 -2.6
337,185 + ABZR87_RS01605 0.23 -0.6
337,185 + ABZR87_RS01605 0.23 -3.8
337,185 + ABZR87_RS01605 0.23 -3.1
337,186 - ABZR87_RS01605 0.23 -0.9
337,302 + ABZR87_RS01605 0.36 -3.7
337,632 + ABZR87_RS01605 0.72 -3.5
337,633 - ABZR87_RS01605 0.72 -3.3
337,633 - ABZR87_RS01605 0.72 -2.0
337,633 - ABZR87_RS01605 0.72 -3.7
337,633 - ABZR87_RS01605 0.72 -2.4
337,633 - ABZR87_RS01605 0.72 -1.7
337,728 + ABZR87_RS01605 0.82 -2.1
337,740 + ABZR87_RS01605 0.84 -3.0
337,827 + -3.4
337,827 + -2.9
337,827 + -2.0
337,828 - -1.1
337,828 - -3.2
337,828 - -1.4
337,828 - -0.2

Or see this region's nucleotide sequence