Experiment: 1,2-Propanediol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01515 and ABZR87_RS01520 are separated by 201 nucleotides ABZR87_RS01520 and ABZR87_RS01525 are separated by 16 nucleotides
ABZR87_RS01515: ABZR87_RS01515 - LysR family transcriptional regulator, at 317,850 to 318,794
_RS01515
ABZR87_RS01520: ABZR87_RS01520 - IlvD/Edd family dehydratase, at 318,996 to 320,732
_RS01520
ABZR87_RS01525: ABZR87_RS01525 - MFS transporter, at 320,749 to 322,074
_RS01525
Position (kb) 318
319
320
321 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 318.002 kb on - strand, within ABZR87_RS01515 at 318.010 kb on + strand, within ABZR87_RS01515 at 318.011 kb on - strand, within ABZR87_RS01515 at 318.011 kb on - strand, within ABZR87_RS01515 at 318.013 kb on + strand, within ABZR87_RS01515 at 318.013 kb on + strand, within ABZR87_RS01515 at 318.014 kb on - strand, within ABZR87_RS01515 at 318.014 kb on - strand, within ABZR87_RS01515 at 318.014 kb on - strand, within ABZR87_RS01515 at 318.287 kb on - strand, within ABZR87_RS01515 at 318.584 kb on - strand, within ABZR87_RS01515 at 318.584 kb on - strand, within ABZR87_RS01515 at 318.775 kb on + strand at 318.775 kb on + strand at 318.775 kb on + strand at 318.776 kb on - strand at 318.776 kb on - strand at 318.776 kb on - strand at 318.776 kb on - strand at 318.776 kb on - strand at 318.812 kb on - strand at 318.855 kb on + strand at 318.855 kb on + strand at 318.856 kb on - strand at 318.870 kb on + strand at 318.870 kb on + strand at 318.870 kb on + strand at 318.871 kb on - strand at 318.871 kb on - strand at 318.871 kb on - strand at 318.871 kb on - strand at 319.049 kb on + strand at 319.049 kb on + strand at 319.050 kb on - strand at 319.066 kb on - strand at 319.066 kb on - strand at 319.066 kb on - strand at 319.066 kb on - strand at 319.066 kb on - strand at 319.139 kb on + strand at 319.139 kb on + strand at 319.139 kb on + strand at 319.140 kb on - strand at 319.209 kb on + strand, within ABZR87_RS01520 at 319.209 kb on + strand, within ABZR87_RS01520 at 319.210 kb on - strand, within ABZR87_RS01520 at 319.687 kb on - strand, within ABZR87_RS01520 at 319.687 kb on - strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.956 kb on + strand, within ABZR87_RS01520 at 319.957 kb on - strand, within ABZR87_RS01520 at 319.957 kb on - strand, within ABZR87_RS01520 at 319.957 kb on - strand, within ABZR87_RS01520 at 319.959 kb on + strand, within ABZR87_RS01520 at 319.959 kb on + strand, within ABZR87_RS01520 at 320.250 kb on + strand, within ABZR87_RS01520 at 320.250 kb on + strand, within ABZR87_RS01520 at 320.250 kb on + strand, within ABZR87_RS01520 at 320.251 kb on - strand, within ABZR87_RS01520 at 320.251 kb on - strand, within ABZR87_RS01520 at 320.440 kb on - strand, within ABZR87_RS01520 at 320.592 kb on + strand at 320.593 kb on - strand at 320.593 kb on - strand at 320.640 kb on + strand at 320.640 kb on + strand at 320.641 kb on - strand at 320.641 kb on - strand at 320.860 kb on + strand at 320.860 kb on + strand at 320.861 kb on - strand at 320.861 kb on - strand at 320.861 kb on - strand at 320.872 kb on + strand at 320.872 kb on + strand at 320.872 kb on + strand at 320.872 kb on + strand at 320.873 kb on - strand at 320.873 kb on - strand at 320.874 kb on + strand at 320.874 kb on + strand at 320.875 kb on - strand at 320.889 kb on - strand, within ABZR87_RS01525 at 320.924 kb on + strand, within ABZR87_RS01525 at 320.924 kb on + strand, within ABZR87_RS01525 at 320.924 kb on + strand, within ABZR87_RS01525 at 320.944 kb on + strand, within ABZR87_RS01525 at 320.977 kb on + strand, within ABZR87_RS01525 at 320.977 kb on + strand, within ABZR87_RS01525 at 320.978 kb on - strand, within ABZR87_RS01525 at 320.985 kb on - strand, within ABZR87_RS01525 at 321.109 kb on + strand, within ABZR87_RS01525 at 321.109 kb on + strand, within ABZR87_RS01525 at 321.109 kb on + strand, within ABZR87_RS01525 at 321.110 kb on - strand, within ABZR87_RS01525 at 321.110 kb on - strand, within ABZR87_RS01525 at 321.110 kb on - strand, within ABZR87_RS01525 at 321.110 kb on - strand, within ABZR87_RS01525 at 321.152 kb on - strand, within ABZR87_RS01525 at 321.152 kb on - strand, within ABZR87_RS01525 at 321.152 kb on - strand, within ABZR87_RS01525 at 321.166 kb on + strand, within ABZR87_RS01525 at 321.167 kb on - strand, within ABZR87_RS01525 at 321.373 kb on - strand, within ABZR87_RS01525 at 321.463 kb on + strand, within ABZR87_RS01525 at 321.463 kb on + strand, within ABZR87_RS01525 at 321.464 kb on - strand, within ABZR87_RS01525 at 321.464 kb on - strand, within ABZR87_RS01525 at 321.464 kb on - strand, within ABZR87_RS01525 at 321.559 kb on + strand, within ABZR87_RS01525 at 321.559 kb on + strand, within ABZR87_RS01525 at 321.559 kb on + strand, within ABZR87_RS01525 at 321.559 kb on + strand, within ABZR87_RS01525 at 321.559 kb on + strand, within ABZR87_RS01525 at 321.560 kb on - strand, within ABZR87_RS01525 at 321.643 kb on + strand, within ABZR87_RS01525 at 321.644 kb on - strand, within ABZR87_RS01525 at 321.644 kb on - strand, within ABZR87_RS01525 at 321.668 kb on - strand, within ABZR87_RS01525 at 321.668 kb on - strand, within ABZR87_RS01525 at 321.668 kb on - strand, within ABZR87_RS01525 at 321.706 kb on + strand, within ABZR87_RS01525 at 321.706 kb on + strand, within ABZR87_RS01525 at 321.706 kb on + strand, within ABZR87_RS01525
Per-strain Table
Position Strand Gene LocusTag Fraction 1,2-Propanediol (C) remove 318,002 - ABZR87_RS01515 0.16 -0.2 318,010 + ABZR87_RS01515 0.17 +0.4 318,011 - ABZR87_RS01515 0.17 -0.0 318,011 - ABZR87_RS01515 0.17 -1.4 318,013 + ABZR87_RS01515 0.17 +0.7 318,013 + ABZR87_RS01515 0.17 +0.4 318,014 - ABZR87_RS01515 0.17 +0.2 318,014 - ABZR87_RS01515 0.17 -0.7 318,014 - ABZR87_RS01515 0.17 +0.6 318,287 - ABZR87_RS01515 0.46 -0.7 318,584 - ABZR87_RS01515 0.78 +0.9 318,584 - ABZR87_RS01515 0.78 -0.1 318,775 + +0.1 318,775 + +1.9 318,775 + -0.0 318,776 - +0.7 318,776 - -0.3 318,776 - -1.5 318,776 - -3.4 318,776 - -0.3 318,812 - +0.7 318,855 + +0.5 318,855 + +0.1 318,856 - +0.1 318,870 + -0.1 318,870 + -0.7 318,870 + -0.6 318,871 - +0.2 318,871 - +0.4 318,871 - -0.5 318,871 - -0.3 319,049 + +0.1 319,049 + +0.2 319,050 - +0.9 319,066 - +2.3 319,066 - +0.7 319,066 - -0.4 319,066 - -0.6 319,066 - +0.2 319,139 + -0.0 319,139 + -0.6 319,139 + +0.3 319,140 - +1.0 319,209 + ABZR87_RS01520 0.12 -0.2 319,209 + ABZR87_RS01520 0.12 -0.9 319,210 - ABZR87_RS01520 0.12 +1.8 319,687 - ABZR87_RS01520 0.40 -0.8 319,687 - ABZR87_RS01520 0.40 -0.5 319,956 + ABZR87_RS01520 0.55 +0.5 319,956 + ABZR87_RS01520 0.55 -0.1 319,956 + ABZR87_RS01520 0.55 +0.2 319,956 + ABZR87_RS01520 0.55 +1.7 319,956 + ABZR87_RS01520 0.55 -0.8 319,956 + ABZR87_RS01520 0.55 +0.2 319,956 + ABZR87_RS01520 0.55 +0.4 319,956 + ABZR87_RS01520 0.55 -1.1 319,956 + ABZR87_RS01520 0.55 -0.1 319,956 + ABZR87_RS01520 0.55 +0.1 319,957 - ABZR87_RS01520 0.55 +0.1 319,957 - ABZR87_RS01520 0.55 +2.1 319,957 - ABZR87_RS01520 0.55 +0.0 319,959 + ABZR87_RS01520 0.55 -1.1 319,959 + ABZR87_RS01520 0.55 -0.0 320,250 + ABZR87_RS01520 0.72 +1.3 320,250 + ABZR87_RS01520 0.72 -0.2 320,250 + ABZR87_RS01520 0.72 +0.0 320,251 - ABZR87_RS01520 0.72 +1.1 320,251 - ABZR87_RS01520 0.72 -0.0 320,440 - ABZR87_RS01520 0.83 +0.3 320,592 + +0.5 320,593 - -0.4 320,593 - -0.2 320,640 + -0.2 320,640 + -0.1 320,641 - -0.2 320,641 - -0.1 320,860 + -0.4 320,860 + +0.4 320,861 - -0.4 320,861 - -0.0 320,861 - -0.2 320,872 + -1.8 320,872 + -0.0 320,872 + +0.3 320,872 + -0.6 320,873 - -0.4 320,873 - +1.5 320,874 + +0.3 320,874 + +0.6 320,875 - +0.1 320,889 - ABZR87_RS01525 0.11 +0.2 320,924 + ABZR87_RS01525 0.13 -1.6 320,924 + ABZR87_RS01525 0.13 -0.1 320,924 + ABZR87_RS01525 0.13 +1.2 320,944 + ABZR87_RS01525 0.15 +0.6 320,977 + ABZR87_RS01525 0.17 +0.5 320,977 + ABZR87_RS01525 0.17 +0.5 320,978 - ABZR87_RS01525 0.17 -0.1 320,985 - ABZR87_RS01525 0.18 +0.0 321,109 + ABZR87_RS01525 0.27 -0.4 321,109 + ABZR87_RS01525 0.27 +0.7 321,109 + ABZR87_RS01525 0.27 +0.0 321,110 - ABZR87_RS01525 0.27 +0.4 321,110 - ABZR87_RS01525 0.27 +0.1 321,110 - ABZR87_RS01525 0.27 +0.2 321,110 - ABZR87_RS01525 0.27 -0.6 321,152 - ABZR87_RS01525 0.30 -0.1 321,152 - ABZR87_RS01525 0.30 +0.5 321,152 - ABZR87_RS01525 0.30 +0.0 321,166 + ABZR87_RS01525 0.31 -0.5 321,167 - ABZR87_RS01525 0.32 +0.3 321,373 - ABZR87_RS01525 0.47 -0.0 321,463 + ABZR87_RS01525 0.54 +0.8 321,463 + ABZR87_RS01525 0.54 -0.0 321,464 - ABZR87_RS01525 0.54 -0.2 321,464 - ABZR87_RS01525 0.54 +0.9 321,464 - ABZR87_RS01525 0.54 -0.6 321,559 + ABZR87_RS01525 0.61 +0.2 321,559 + ABZR87_RS01525 0.61 -0.2 321,559 + ABZR87_RS01525 0.61 +0.3 321,559 + ABZR87_RS01525 0.61 +0.1 321,559 + ABZR87_RS01525 0.61 +0.6 321,560 - ABZR87_RS01525 0.61 -1.0 321,643 + ABZR87_RS01525 0.67 +0.2 321,644 - ABZR87_RS01525 0.67 +0.1 321,644 - ABZR87_RS01525 0.67 +0.5 321,668 - ABZR87_RS01525 0.69 -0.2 321,668 - ABZR87_RS01525 0.69 -0.0 321,668 - ABZR87_RS01525 0.69 -0.3 321,706 + ABZR87_RS01525 0.72 +0.2 321,706 + ABZR87_RS01525 0.72 +0.3 321,706 + ABZR87_RS01525 0.72 +1.1
Or see this region's nucleotide sequence