Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4114 and Shewana3_4115 are separated by 68 nucleotides Shewana3_4115 and Shewana3_4116 are separated by 294 nucleotides Shewana3_4116 and Shewana3_4117 are separated by 71 nucleotides
Shewana3_4114: Shewana3_4114 - hypothetical protein (RefSeq), at 4,938,058 to 4,938,612
_4114
Shewana3_4115: Shewana3_4115 - hypothetical protein (RefSeq), at 4,938,681 to 4,939,148
_4115
Shewana3_4116: Shewana3_4116 - coproporphyrinogen III oxidase (RefSeq), at 4,939,443 to 4,940,783
_4116
Shewana3_4117: Shewana3_4117 - adenosine deaminase (RefSeq), at 4,940,855 to 4,941,850
_4117
Position (kb)
4939
4940
4941 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4938.699 kb on - strand at 4938.760 kb on - strand, within Shewana3_4115 at 4938.989 kb on + strand, within Shewana3_4115 at 4939.085 kb on + strand, within Shewana3_4115 at 4939.231 kb on - strand at 4939.231 kb on - strand at 4939.243 kb on - strand at 4939.405 kb on + strand at 4939.413 kb on - strand at 4939.429 kb on + strand at 4939.429 kb on + strand at 4939.473 kb on + strand at 4939.480 kb on - strand at 4939.488 kb on - strand at 4939.621 kb on + strand, within Shewana3_4116 at 4939.757 kb on - strand, within Shewana3_4116 at 4939.760 kb on + strand, within Shewana3_4116 at 4940.095 kb on + strand, within Shewana3_4116 at 4940.124 kb on + strand, within Shewana3_4116 at 4940.129 kb on + strand, within Shewana3_4116 at 4940.132 kb on - strand, within Shewana3_4116 at 4940.281 kb on - strand, within Shewana3_4116 at 4940.342 kb on + strand, within Shewana3_4116 at 4940.342 kb on + strand, within Shewana3_4116 at 4940.350 kb on - strand, within Shewana3_4116 at 4940.350 kb on - strand, within Shewana3_4116 at 4940.385 kb on - strand, within Shewana3_4116 at 4940.478 kb on - strand, within Shewana3_4116 at 4940.487 kb on + strand, within Shewana3_4116 at 4940.496 kb on - strand, within Shewana3_4116 at 4941.184 kb on + strand, within Shewana3_4117 at 4941.294 kb on + strand, within Shewana3_4117 at 4941.302 kb on - strand, within Shewana3_4117 at 4941.302 kb on - strand, within Shewana3_4117 at 4941.329 kb on + strand, within Shewana3_4117 at 4941.438 kb on - strand, within Shewana3_4117 at 4941.465 kb on + strand, within Shewana3_4117 at 4941.694 kb on - strand, within Shewana3_4117
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,938,699 - +0.2 4,938,760 - Shewana3_4115 0.17 -0.5 4,938,989 + Shewana3_4115 0.66 -0.0 4,939,085 + Shewana3_4115 0.86 -0.4 4,939,231 - -0.3 4,939,231 - +0.6 4,939,243 - +1.0 4,939,405 + -0.6 4,939,413 - +2.0 4,939,429 + -0.2 4,939,429 + +1.5 4,939,473 + -0.6 4,939,480 - +0.6 4,939,488 - +0.6 4,939,621 + Shewana3_4116 0.13 -1.1 4,939,757 - Shewana3_4116 0.23 -0.5 4,939,760 + Shewana3_4116 0.24 +1.3 4,940,095 + Shewana3_4116 0.49 -0.3 4,940,124 + Shewana3_4116 0.51 -0.2 4,940,129 + Shewana3_4116 0.51 +1.5 4,940,132 - Shewana3_4116 0.51 -1.0 4,940,281 - Shewana3_4116 0.62 -0.1 4,940,342 + Shewana3_4116 0.67 +0.2 4,940,342 + Shewana3_4116 0.67 -1.8 4,940,350 - Shewana3_4116 0.68 -0.4 4,940,350 - Shewana3_4116 0.68 +0.4 4,940,385 - Shewana3_4116 0.70 -0.3 4,940,478 - Shewana3_4116 0.77 -0.7 4,940,487 + Shewana3_4116 0.78 +1.2 4,940,496 - Shewana3_4116 0.79 +2.2 4,941,184 + Shewana3_4117 0.33 +6.0 4,941,294 + Shewana3_4117 0.44 -0.3 4,941,302 - Shewana3_4117 0.45 +0.1 4,941,302 - Shewana3_4117 0.45 +0.0 4,941,329 + Shewana3_4117 0.48 +1.0 4,941,438 - Shewana3_4117 0.59 -0.2 4,941,465 + Shewana3_4117 0.61 +0.8 4,941,694 - Shewana3_4117 0.84 -0.8
Or see this region's nucleotide sequence