Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4099 and Shewana3_4100 are separated by 52 nucleotides Shewana3_4100 and Shewana3_4101 are separated by 109 nucleotides Shewana3_4101 and Shewana3_4102 are separated by 14 nucleotides
Shewana3_4099: Shewana3_4099 - glycosyl transferase, group 1 (RefSeq), at 4,921,259 to 4,922,344
_4099
Shewana3_4100: Shewana3_4100 - glycosyl transferase family protein (RefSeq), at 4,922,397 to 4,923,419
_4100
Shewana3_4101: Shewana3_4101 - 3-deoxy-D-manno-octulosonic-acid kinase (RefSeq), at 4,923,529 to 4,924,281
_4101
Shewana3_4102: Shewana3_4102 - coproporphyrinogen oxidase (RefSeq), at 4,924,296 to 4,925,621
_4102
Position (kb)
4922
4923
4924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4921.463 kb on - strand, within Shewana3_4099 at 4921.484 kb on + strand, within Shewana3_4099 at 4921.498 kb on - strand, within Shewana3_4099 at 4921.681 kb on + strand, within Shewana3_4099 at 4921.694 kb on + strand, within Shewana3_4099 at 4921.878 kb on + strand, within Shewana3_4099 at 4921.892 kb on + strand, within Shewana3_4099 at 4921.956 kb on + strand, within Shewana3_4099 at 4921.964 kb on - strand, within Shewana3_4099 at 4921.979 kb on + strand, within Shewana3_4099 at 4922.028 kb on - strand, within Shewana3_4099 at 4922.093 kb on - strand, within Shewana3_4099 at 4922.286 kb on + strand at 4922.327 kb on + strand at 4922.329 kb on - strand at 4922.385 kb on + strand at 4922.385 kb on + strand at 4922.393 kb on + strand at 4922.395 kb on + strand at 4922.421 kb on - strand at 4922.494 kb on + strand at 4922.509 kb on - strand, within Shewana3_4100 at 4922.612 kb on - strand, within Shewana3_4100 at 4922.664 kb on + strand, within Shewana3_4100 at 4922.671 kb on - strand, within Shewana3_4100 at 4922.775 kb on + strand, within Shewana3_4100 at 4922.792 kb on - strand, within Shewana3_4100 at 4922.815 kb on + strand, within Shewana3_4100 at 4922.815 kb on + strand, within Shewana3_4100 at 4922.823 kb on - strand, within Shewana3_4100 at 4922.970 kb on - strand, within Shewana3_4100 at 4922.978 kb on + strand, within Shewana3_4100 at 4923.044 kb on - strand, within Shewana3_4100 at 4923.205 kb on + strand, within Shewana3_4100 at 4923.364 kb on - strand at 4923.449 kb on + strand at 4923.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,921,463 - Shewana3_4099 0.19 +1.5 4,921,484 + Shewana3_4099 0.21 +2.5 4,921,498 - Shewana3_4099 0.22 +1.6 4,921,681 + Shewana3_4099 0.39 +2.4 4,921,694 + Shewana3_4099 0.40 +2.2 4,921,878 + Shewana3_4099 0.57 -0.5 4,921,892 + Shewana3_4099 0.58 +3.0 4,921,956 + Shewana3_4099 0.64 +0.5 4,921,964 - Shewana3_4099 0.65 +1.0 4,921,979 + Shewana3_4099 0.66 -0.0 4,922,028 - Shewana3_4099 0.71 +3.6 4,922,093 - Shewana3_4099 0.77 +1.4 4,922,286 + +1.5 4,922,327 + +2.2 4,922,329 - -1.9 4,922,385 + +0.4 4,922,385 + +0.7 4,922,393 + +0.2 4,922,395 + +1.7 4,922,421 - +0.1 4,922,494 + +2.9 4,922,509 - Shewana3_4100 0.11 +1.7 4,922,612 - Shewana3_4100 0.21 +3.5 4,922,664 + Shewana3_4100 0.26 +3.3 4,922,671 - Shewana3_4100 0.27 +2.0 4,922,775 + Shewana3_4100 0.37 +2.4 4,922,792 - Shewana3_4100 0.39 +5.9 4,922,815 + Shewana3_4100 0.41 +4.3 4,922,815 + Shewana3_4100 0.41 -2.3 4,922,823 - Shewana3_4100 0.42 +3.7 4,922,970 - Shewana3_4100 0.56 +3.1 4,922,978 + Shewana3_4100 0.57 +2.9 4,923,044 - Shewana3_4100 0.63 +2.8 4,923,205 + Shewana3_4100 0.79 +2.7 4,923,364 - +5.1 4,923,449 + +2.5 4,923,470 + +2.7
Or see this region's nucleotide sequence