Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4052 and Shewana3_4053 are separated by 93 nucleotides Shewana3_4053 and Shewana3_4054 are separated by 167 nucleotides
Shewana3_4052: Shewana3_4052 - hypothetical protein (RefSeq), at 4,869,032 to 4,869,820
_4052
Shewana3_4053: Shewana3_4053 - hypothetical protein (RefSeq), at 4,869,914 to 4,870,429
_4053
Shewana3_4054: Shewana3_4054 - glutathione reductase (RefSeq), at 4,870,597 to 4,871,952
_4054
Position (kb)
4869
4870
4871 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 4869.135 kb on - strand, within Shewana3_4052 at 4869.172 kb on + strand, within Shewana3_4052 at 4869.173 kb on - strand, within Shewana3_4052 at 4869.185 kb on + strand, within Shewana3_4052 at 4869.185 kb on + strand, within Shewana3_4052 at 4869.215 kb on - strand, within Shewana3_4052 at 4869.215 kb on - strand, within Shewana3_4052 at 4869.301 kb on - strand, within Shewana3_4052 at 4869.304 kb on + strand, within Shewana3_4052 at 4869.333 kb on - strand, within Shewana3_4052 at 4869.368 kb on - strand, within Shewana3_4052 at 4869.368 kb on - strand, within Shewana3_4052 at 4869.385 kb on - strand, within Shewana3_4052 at 4869.414 kb on - strand, within Shewana3_4052 at 4869.455 kb on + strand, within Shewana3_4052 at 4869.498 kb on + strand, within Shewana3_4052 at 4869.560 kb on - strand, within Shewana3_4052 at 4870.034 kb on - strand, within Shewana3_4053 at 4870.501 kb on - strand at 4870.684 kb on - strand at 4870.788 kb on + strand, within Shewana3_4054 at 4870.873 kb on - strand, within Shewana3_4054 at 4870.896 kb on - strand, within Shewana3_4054 at 4870.934 kb on - strand, within Shewana3_4054 at 4870.961 kb on + strand, within Shewana3_4054 at 4871.065 kb on - strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.094 kb on + strand, within Shewana3_4054 at 4871.173 kb on + strand, within Shewana3_4054 at 4871.261 kb on + strand, within Shewana3_4054 at 4871.266 kb on + strand, within Shewana3_4054 at 4871.266 kb on + strand, within Shewana3_4054 at 4871.269 kb on - strand, within Shewana3_4054 at 4871.269 kb on - strand, within Shewana3_4054
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,869,135 - Shewana3_4052 0.13 -0.6 4,869,172 + Shewana3_4052 0.18 -0.4 4,869,173 - Shewana3_4052 0.18 +0.3 4,869,185 + Shewana3_4052 0.19 +0.1 4,869,185 + Shewana3_4052 0.19 +1.2 4,869,215 - Shewana3_4052 0.23 -0.3 4,869,215 - Shewana3_4052 0.23 -0.0 4,869,301 - Shewana3_4052 0.34 +0.3 4,869,304 + Shewana3_4052 0.34 -0.0 4,869,333 - Shewana3_4052 0.38 -0.6 4,869,368 - Shewana3_4052 0.43 -0.5 4,869,368 - Shewana3_4052 0.43 -0.3 4,869,385 - Shewana3_4052 0.45 -0.8 4,869,414 - Shewana3_4052 0.48 +1.0 4,869,455 + Shewana3_4052 0.54 -0.4 4,869,498 + Shewana3_4052 0.59 +1.0 4,869,560 - Shewana3_4052 0.67 -0.2 4,870,034 - Shewana3_4053 0.23 -0.9 4,870,501 - +0.1 4,870,684 - +2.5 4,870,788 + Shewana3_4054 0.14 +2.4 4,870,873 - Shewana3_4054 0.20 +1.4 4,870,896 - Shewana3_4054 0.22 +3.2 4,870,934 - Shewana3_4054 0.25 +2.9 4,870,961 + Shewana3_4054 0.27 +2.1 4,871,065 - Shewana3_4054 0.35 +3.0 4,871,094 + Shewana3_4054 0.37 +2.7 4,871,094 + Shewana3_4054 0.37 +6.0 4,871,094 + Shewana3_4054 0.37 +1.4 4,871,094 + Shewana3_4054 0.37 +3.2 4,871,094 + Shewana3_4054 0.37 +3.3 4,871,173 + Shewana3_4054 0.42 +3.1 4,871,261 + Shewana3_4054 0.49 -0.3 4,871,266 + Shewana3_4054 0.49 +3.7 4,871,266 + Shewana3_4054 0.49 +2.7 4,871,269 - Shewana3_4054 0.50 +3.0 4,871,269 - Shewana3_4054 0.50 +2.7
Or see this region's nucleotide sequence