Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4041 and Shewana3_4042 are separated by 466 nucleotides Shewana3_4042 and Shewana3_4043 are separated by 92 nucleotides Shewana3_4043 and Shewana3_4044 are separated by 47 nucleotides Shewana3_4044 and Shewana3_4045 are separated by 109 nucleotides
Shewana3_4041: Shewana3_4041 - LemA family protein (RefSeq), at 4,854,778 to 4,855,344
_4041
Shewana3_4042: Shewana3_4042 - AbgT putative transporter (RefSeq), at 4,855,811 to 4,857,418
_4042
Shewana3_4043: Shewana3_4043 - hypothetical protein (RefSeq), at 4,857,511 to 4,857,810
_4043
Shewana3_4044: Shewana3_4044 - hypothetical protein (RefSeq), at 4,857,858 to 4,858,154
_4044
Shewana3_4045: Shewana3_4045 - hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq), at 4,858,264 to 4,861,398
_4045
Position (kb)
4855
4856
4857
4858 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.850 kb on - strand, within Shewana3_4041 at 4855.458 kb on + strand at 4855.458 kb on + strand at 4855.466 kb on - strand at 4855.714 kb on - strand at 4855.729 kb on + strand at 4855.737 kb on - strand at 4855.842 kb on + strand at 4856.140 kb on + strand, within Shewana3_4042 at 4856.146 kb on - strand, within Shewana3_4042 at 4856.146 kb on - strand, within Shewana3_4042 at 4856.153 kb on - strand, within Shewana3_4042 at 4856.158 kb on - strand, within Shewana3_4042 at 4856.172 kb on - strand, within Shewana3_4042 at 4856.427 kb on - strand, within Shewana3_4042 at 4856.709 kb on + strand, within Shewana3_4042 at 4856.742 kb on - strand, within Shewana3_4042 at 4856.886 kb on + strand, within Shewana3_4042 at 4856.899 kb on - strand, within Shewana3_4042 at 4856.910 kb on + strand, within Shewana3_4042 at 4856.910 kb on + strand, within Shewana3_4042 at 4856.970 kb on + strand, within Shewana3_4042 at 4857.227 kb on - strand, within Shewana3_4042 at 4857.229 kb on - strand, within Shewana3_4042 at 4857.244 kb on + strand, within Shewana3_4042 at 4857.588 kb on - strand, within Shewana3_4043 at 4857.636 kb on - strand, within Shewana3_4043 at 4857.636 kb on - strand, within Shewana3_4043 at 4857.705 kb on + strand, within Shewana3_4043 at 4857.823 kb on - strand at 4857.909 kb on - strand, within Shewana3_4044 at 4858.048 kb on + strand, within Shewana3_4044 at 4858.110 kb on - strand, within Shewana3_4044 at 4858.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,854,842 + Shewana3_4041 0.11 +0.5 4,854,842 + Shewana3_4041 0.11 -1.7 4,854,842 + Shewana3_4041 0.11 -0.4 4,854,842 + Shewana3_4041 0.11 -0.7 4,854,850 - Shewana3_4041 0.13 +0.1 4,855,458 + +0.4 4,855,458 + -1.0 4,855,466 - -0.4 4,855,714 - -3.1 4,855,729 + +0.0 4,855,737 - +0.6 4,855,842 + -0.9 4,856,140 + Shewana3_4042 0.20 -0.1 4,856,146 - Shewana3_4042 0.21 -0.8 4,856,146 - Shewana3_4042 0.21 +0.1 4,856,153 - Shewana3_4042 0.21 +0.7 4,856,158 - Shewana3_4042 0.22 -1.0 4,856,172 - Shewana3_4042 0.22 -0.8 4,856,427 - Shewana3_4042 0.38 -0.0 4,856,709 + Shewana3_4042 0.56 -0.7 4,856,742 - Shewana3_4042 0.58 -0.5 4,856,886 + Shewana3_4042 0.67 -0.8 4,856,899 - Shewana3_4042 0.68 +0.6 4,856,910 + Shewana3_4042 0.68 -0.1 4,856,910 + Shewana3_4042 0.68 -0.2 4,856,970 + Shewana3_4042 0.72 -0.9 4,857,227 - Shewana3_4042 0.88 +0.4 4,857,229 - Shewana3_4042 0.88 -0.8 4,857,244 + Shewana3_4042 0.89 +0.2 4,857,588 - Shewana3_4043 0.26 -0.0 4,857,636 - Shewana3_4043 0.42 -0.2 4,857,636 - Shewana3_4043 0.42 -0.3 4,857,705 + Shewana3_4043 0.65 +0.2 4,857,823 - -0.3 4,857,909 - Shewana3_4044 0.17 -1.6 4,858,048 + Shewana3_4044 0.64 -0.0 4,858,110 - Shewana3_4044 0.85 -0.9 4,858,347 - -0.6
Or see this region's nucleotide sequence