Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4041
Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Paraquat dichloride 0.008 mg/ml |
---|---|---|---|---|---|
remove | |||||
4,853,923 | + | Shewana3_4040 | 0.22 | -0.4 | |
4,853,957 | + | Shewana3_4040 | 0.25 | -1.9 | |
4,854,151 | + | Shewana3_4040 | 0.44 | +0.9 | |
4,854,206 | - | Shewana3_4040 | 0.49 | -0.1 | |
4,854,208 | + | Shewana3_4040 | 0.49 | +0.1 | |
4,854,449 | - | Shewana3_4040 | 0.73 | -0.6 | |
4,854,488 | + | Shewana3_4040 | 0.77 | -0.7 | |
4,854,569 | - | Shewana3_4040 | 0.85 | +0.3 | |
4,854,639 | - | +0.2 | |||
4,854,842 | + | Shewana3_4041 | 0.11 | +0.5 | |
4,854,842 | + | Shewana3_4041 | 0.11 | -1.7 | |
4,854,842 | + | Shewana3_4041 | 0.11 | -0.4 | |
4,854,842 | + | Shewana3_4041 | 0.11 | -0.7 | |
4,854,850 | - | Shewana3_4041 | 0.13 | +0.1 | |
4,855,458 | + | +0.4 | |||
4,855,458 | + | -1.0 | |||
4,855,466 | - | -0.4 | |||
4,855,714 | - | -3.1 | |||
4,855,729 | + | +0.0 | |||
4,855,737 | - | +0.6 | |||
4,855,842 | + | -0.9 | |||
4,856,140 | + | Shewana3_4042 | 0.20 | -0.1 | |
4,856,146 | - | Shewana3_4042 | 0.21 | -0.8 | |
4,856,146 | - | Shewana3_4042 | 0.21 | +0.1 | |
4,856,153 | - | Shewana3_4042 | 0.21 | +0.7 | |
4,856,158 | - | Shewana3_4042 | 0.22 | -1.0 | |
4,856,172 | - | Shewana3_4042 | 0.22 | -0.8 |
Or see this region's nucleotide sequence