Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4038 and Shewana3_4039 are separated by 154 nucleotides Shewana3_4039 and Shewana3_4040 overlap by 1 nucleotides Shewana3_4040 and Shewana3_4041 are separated by 50 nucleotides
Shewana3_4038: Shewana3_4038 - hypothetical protein (RefSeq), at 4,851,980 to 4,852,825
_4038
Shewana3_4039: Shewana3_4039 - lytic transglycosylase, catalytic (RefSeq), at 4,852,980 to 4,853,699
_4039
Shewana3_4040: Shewana3_4040 - hypothetical protein (RefSeq), at 4,853,699 to 4,854,727
_4040
Shewana3_4041: Shewana3_4041 - LemA family protein (RefSeq), at 4,854,778 to 4,855,344
_4041
Position (kb)
4853
4854
4855 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4852.708 kb on - strand, within Shewana3_4038 at 4852.993 kb on - strand at 4853.067 kb on + strand, within Shewana3_4039 at 4853.117 kb on - strand, within Shewana3_4039 at 4853.315 kb on + strand, within Shewana3_4039 at 4853.417 kb on - strand, within Shewana3_4039 at 4853.536 kb on + strand, within Shewana3_4039 at 4853.544 kb on - strand, within Shewana3_4039 at 4853.544 kb on - strand, within Shewana3_4039 at 4853.765 kb on + strand at 4853.771 kb on - strand at 4853.923 kb on + strand, within Shewana3_4040 at 4853.957 kb on + strand, within Shewana3_4040 at 4854.151 kb on + strand, within Shewana3_4040 at 4854.206 kb on - strand, within Shewana3_4040 at 4854.208 kb on + strand, within Shewana3_4040 at 4854.449 kb on - strand, within Shewana3_4040 at 4854.488 kb on + strand, within Shewana3_4040 at 4854.569 kb on - strand, within Shewana3_4040 at 4854.639 kb on - strand at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.842 kb on + strand, within Shewana3_4041 at 4854.850 kb on - strand, within Shewana3_4041 at 4855.458 kb on + strand at 4855.458 kb on + strand at 4855.466 kb on - strand at 4855.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,852,708 - Shewana3_4038 0.86 +0.2 4,852,993 - +0.3 4,853,067 + Shewana3_4039 0.12 +0.3 4,853,117 - Shewana3_4039 0.19 -1.2 4,853,315 + Shewana3_4039 0.47 +0.6 4,853,417 - Shewana3_4039 0.61 -0.2 4,853,536 + Shewana3_4039 0.77 -1.8 4,853,544 - Shewana3_4039 0.78 -0.6 4,853,544 - Shewana3_4039 0.78 -0.6 4,853,765 + +0.5 4,853,771 - -2.1 4,853,923 + Shewana3_4040 0.22 -0.4 4,853,957 + Shewana3_4040 0.25 -1.9 4,854,151 + Shewana3_4040 0.44 +0.9 4,854,206 - Shewana3_4040 0.49 -0.1 4,854,208 + Shewana3_4040 0.49 +0.1 4,854,449 - Shewana3_4040 0.73 -0.6 4,854,488 + Shewana3_4040 0.77 -0.7 4,854,569 - Shewana3_4040 0.85 +0.3 4,854,639 - +0.2 4,854,842 + Shewana3_4041 0.11 +0.5 4,854,842 + Shewana3_4041 0.11 -1.7 4,854,842 + Shewana3_4041 0.11 -0.4 4,854,842 + Shewana3_4041 0.11 -0.7 4,854,850 - Shewana3_4041 0.13 +0.1 4,855,458 + +0.4 4,855,458 + -1.0 4,855,466 - -0.4 4,855,714 - -3.1
Or see this region's nucleotide sequence