Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4040

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4038 and Shewana3_4039 are separated by 154 nucleotidesShewana3_4039 and Shewana3_4040 overlap by 1 nucleotidesShewana3_4040 and Shewana3_4041 are separated by 50 nucleotides Shewana3_4038: Shewana3_4038 - hypothetical protein (RefSeq), at 4,851,980 to 4,852,825 _4038 Shewana3_4039: Shewana3_4039 - lytic transglycosylase, catalytic (RefSeq), at 4,852,980 to 4,853,699 _4039 Shewana3_4040: Shewana3_4040 - hypothetical protein (RefSeq), at 4,853,699 to 4,854,727 _4040 Shewana3_4041: Shewana3_4041 - LemA family protein (RefSeq), at 4,854,778 to 4,855,344 _4041 Position (kb) 4853 4854 4855Strain fitness (log2 ratio) -3 -2 -1 0 1at 4852.708 kb on - strand, within Shewana3_4038at 4852.993 kb on - strandat 4853.067 kb on + strand, within Shewana3_4039at 4853.117 kb on - strand, within Shewana3_4039at 4853.315 kb on + strand, within Shewana3_4039at 4853.417 kb on - strand, within Shewana3_4039at 4853.536 kb on + strand, within Shewana3_4039at 4853.544 kb on - strand, within Shewana3_4039at 4853.544 kb on - strand, within Shewana3_4039at 4853.765 kb on + strandat 4853.771 kb on - strandat 4853.923 kb on + strand, within Shewana3_4040at 4853.957 kb on + strand, within Shewana3_4040at 4854.151 kb on + strand, within Shewana3_4040at 4854.206 kb on - strand, within Shewana3_4040at 4854.208 kb on + strand, within Shewana3_4040at 4854.449 kb on - strand, within Shewana3_4040at 4854.488 kb on + strand, within Shewana3_4040at 4854.569 kb on - strand, within Shewana3_4040at 4854.639 kb on - strandat 4854.842 kb on + strand, within Shewana3_4041at 4854.842 kb on + strand, within Shewana3_4041at 4854.842 kb on + strand, within Shewana3_4041at 4854.842 kb on + strand, within Shewana3_4041at 4854.850 kb on - strand, within Shewana3_4041at 4855.458 kb on + strandat 4855.458 kb on + strandat 4855.466 kb on - strandat 4855.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,852,708 - Shewana3_4038 0.86 +0.2
4,852,993 - +0.3
4,853,067 + Shewana3_4039 0.12 +0.3
4,853,117 - Shewana3_4039 0.19 -1.2
4,853,315 + Shewana3_4039 0.47 +0.6
4,853,417 - Shewana3_4039 0.61 -0.2
4,853,536 + Shewana3_4039 0.77 -1.8
4,853,544 - Shewana3_4039 0.78 -0.6
4,853,544 - Shewana3_4039 0.78 -0.6
4,853,765 + +0.5
4,853,771 - -2.1
4,853,923 + Shewana3_4040 0.22 -0.4
4,853,957 + Shewana3_4040 0.25 -1.9
4,854,151 + Shewana3_4040 0.44 +0.9
4,854,206 - Shewana3_4040 0.49 -0.1
4,854,208 + Shewana3_4040 0.49 +0.1
4,854,449 - Shewana3_4040 0.73 -0.6
4,854,488 + Shewana3_4040 0.77 -0.7
4,854,569 - Shewana3_4040 0.85 +0.3
4,854,639 - +0.2
4,854,842 + Shewana3_4041 0.11 +0.5
4,854,842 + Shewana3_4041 0.11 -1.7
4,854,842 + Shewana3_4041 0.11 -0.4
4,854,842 + Shewana3_4041 0.11 -0.7
4,854,850 - Shewana3_4041 0.13 +0.1
4,855,458 + +0.4
4,855,458 + -1.0
4,855,466 - -0.4
4,855,714 - -3.1

Or see this region's nucleotide sequence