Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4032 and Shewana3_4033 are separated by 1 nucleotides Shewana3_4033 and Shewana3_4034 overlap by 1 nucleotides Shewana3_4034 and Shewana3_4035 are separated by 13 nucleotides Shewana3_4035 and Shewana3_4036 are separated by 182 nucleotides
Shewana3_4032: Shewana3_4032 - cytochrome c oxidase, subunit I (RefSeq), at 4,845,079 to 4,847,058
_4032
Shewana3_4033: Shewana3_4033 - cytochrome c oxidase, subunit III (RefSeq), at 4,847,060 to 4,847,680
_4033
Shewana3_4034: Shewana3_4034 - cytochrome C oxidase subunit IV (RefSeq), at 4,847,680 to 4,848,021
_4034
Shewana3_4035: Shewana3_4035 - protoheme IX farnesyltransferase (RefSeq), at 4,848,035 to 4,848,967
_4035
Shewana3_4036: Shewana3_4036 - amidohydrolase 3 (RefSeq), at 4,849,150 to 4,850,955
_4036
Position (kb)
4848
4849 Strain fitness (log2 ratio)
-1
0
1
2 at 4847.057 kb on + strand at 4847.224 kb on - strand, within Shewana3_4033 at 4847.309 kb on + strand, within Shewana3_4033 at 4847.372 kb on + strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.522 kb on + strand, within Shewana3_4033 at 4847.591 kb on + strand, within Shewana3_4033 at 4847.591 kb on + strand, within Shewana3_4033 at 4847.599 kb on - strand, within Shewana3_4033 at 4847.662 kb on - strand at 4847.759 kb on + strand, within Shewana3_4034 at 4847.906 kb on + strand, within Shewana3_4034 at 4848.224 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035 at 4848.727 kb on + strand, within Shewana3_4035 at 4848.776 kb on + strand, within Shewana3_4035 at 4848.812 kb on - strand, within Shewana3_4035 at 4848.825 kb on - strand, within Shewana3_4035 at 4848.832 kb on - strand, within Shewana3_4035 at 4849.023 kb on + strand at 4849.176 kb on - strand at 4849.444 kb on - strand, within Shewana3_4036 at 4849.586 kb on + strand, within Shewana3_4036 at 4849.652 kb on - strand, within Shewana3_4036 at 4849.657 kb on - strand, within Shewana3_4036 at 4849.657 kb on - strand, within Shewana3_4036 at 4849.903 kb on + strand, within Shewana3_4036 at 4849.905 kb on + strand, within Shewana3_4036 at 4849.964 kb on - strand, within Shewana3_4036 at 4849.964 kb on - strand, within Shewana3_4036
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,847,057 + +0.9 4,847,224 - Shewana3_4033 0.26 -0.3 4,847,309 + Shewana3_4033 0.40 +0.4 4,847,372 + Shewana3_4033 0.50 -0.4 4,847,380 - Shewana3_4033 0.52 -1.2 4,847,380 - Shewana3_4033 0.52 +1.4 4,847,380 - Shewana3_4033 0.52 +0.6 4,847,522 + Shewana3_4033 0.74 +0.4 4,847,591 + Shewana3_4033 0.86 -0.2 4,847,591 + Shewana3_4033 0.86 -0.0 4,847,599 - Shewana3_4033 0.87 +0.1 4,847,662 - -0.2 4,847,759 + Shewana3_4034 0.23 -0.0 4,847,906 + Shewana3_4034 0.66 +0.2 4,848,224 + Shewana3_4035 0.20 +1.6 4,848,348 + Shewana3_4035 0.34 +0.9 4,848,348 + Shewana3_4035 0.34 +2.6 4,848,348 + Shewana3_4035 0.34 +1.1 4,848,727 + Shewana3_4035 0.74 +1.7 4,848,776 + Shewana3_4035 0.79 +0.8 4,848,812 - Shewana3_4035 0.83 +1.3 4,848,825 - Shewana3_4035 0.85 +1.0 4,848,832 - Shewana3_4035 0.85 +0.5 4,849,023 + -1.0 4,849,176 - +0.4 4,849,444 - Shewana3_4036 0.16 -0.2 4,849,586 + Shewana3_4036 0.24 +1.8 4,849,652 - Shewana3_4036 0.28 -0.0 4,849,657 - Shewana3_4036 0.28 -0.1 4,849,657 - Shewana3_4036 0.28 +0.1 4,849,903 + Shewana3_4036 0.42 -0.9 4,849,905 + Shewana3_4036 0.42 -0.3 4,849,964 - Shewana3_4036 0.45 +0.1 4,849,964 - Shewana3_4036 0.45 +0.2
Or see this region's nucleotide sequence