Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4032 and Shewana3_4033 are separated by 1 nucleotides Shewana3_4033 and Shewana3_4034 overlap by 1 nucleotides Shewana3_4034 and Shewana3_4035 are separated by 13 nucleotides
Shewana3_4032: Shewana3_4032 - cytochrome c oxidase, subunit I (RefSeq), at 4,845,079 to 4,847,058
_4032
Shewana3_4033: Shewana3_4033 - cytochrome c oxidase, subunit III (RefSeq), at 4,847,060 to 4,847,680
_4033
Shewana3_4034: Shewana3_4034 - cytochrome C oxidase subunit IV (RefSeq), at 4,847,680 to 4,848,021
_4034
Shewana3_4035: Shewana3_4035 - protoheme IX farnesyltransferase (RefSeq), at 4,848,035 to 4,848,967
_4035
Position (kb)
4847
4848 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11 at 4846.143 kb on + strand, within Shewana3_4032 at 4846.171 kb on - strand, within Shewana3_4032 at 4846.241 kb on + strand, within Shewana3_4032 at 4846.301 kb on - strand, within Shewana3_4032 at 4846.312 kb on - strand, within Shewana3_4032 at 4846.552 kb on + strand, within Shewana3_4032 at 4846.552 kb on + strand, within Shewana3_4032 at 4846.630 kb on + strand, within Shewana3_4032 at 4846.668 kb on + strand, within Shewana3_4032 at 4846.707 kb on - strand, within Shewana3_4032 at 4846.883 kb on - strand at 4846.883 kb on - strand at 4847.057 kb on + strand at 4847.224 kb on - strand, within Shewana3_4033 at 4847.309 kb on + strand, within Shewana3_4033 at 4847.372 kb on + strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.380 kb on - strand, within Shewana3_4033 at 4847.522 kb on + strand, within Shewana3_4033 at 4847.591 kb on + strand, within Shewana3_4033 at 4847.591 kb on + strand, within Shewana3_4033 at 4847.599 kb on - strand, within Shewana3_4033 at 4847.662 kb on - strand at 4847.759 kb on + strand, within Shewana3_4034 at 4847.906 kb on + strand, within Shewana3_4034 at 4848.224 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035 at 4848.348 kb on + strand, within Shewana3_4035
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,846,143 + Shewana3_4032 0.54 +2.7 4,846,171 - Shewana3_4032 0.55 +0.2 4,846,241 + Shewana3_4032 0.59 +3.2 4,846,301 - Shewana3_4032 0.62 +11.1 4,846,312 - Shewana3_4032 0.62 +1.8 4,846,552 + Shewana3_4032 0.74 -3.1 4,846,552 + Shewana3_4032 0.74 -0.3 4,846,630 + Shewana3_4032 0.78 -0.6 4,846,668 + Shewana3_4032 0.80 +0.8 4,846,707 - Shewana3_4032 0.82 -0.3 4,846,883 - +5.1 4,846,883 - -0.4 4,847,057 + +0.9 4,847,224 - Shewana3_4033 0.26 -0.3 4,847,309 + Shewana3_4033 0.40 +0.4 4,847,372 + Shewana3_4033 0.50 -0.4 4,847,380 - Shewana3_4033 0.52 -1.2 4,847,380 - Shewana3_4033 0.52 +1.4 4,847,380 - Shewana3_4033 0.52 +0.6 4,847,522 + Shewana3_4033 0.74 +0.4 4,847,591 + Shewana3_4033 0.86 -0.2 4,847,591 + Shewana3_4033 0.86 -0.0 4,847,599 - Shewana3_4033 0.87 +0.1 4,847,662 - -0.2 4,847,759 + Shewana3_4034 0.23 -0.0 4,847,906 + Shewana3_4034 0.66 +0.2 4,848,224 + Shewana3_4035 0.20 +1.6 4,848,348 + Shewana3_4035 0.34 +0.9 4,848,348 + Shewana3_4035 0.34 +2.6 4,848,348 + Shewana3_4035 0.34 +1.1
Or see this region's nucleotide sequence