Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4031

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4030 and Shewana3_4031 are separated by 189 nucleotidesShewana3_4031 and Shewana3_4032 are separated by 2 nucleotides Shewana3_4030: Shewana3_4030 - hypothetical protein (RefSeq), at 4,843,538 to 4,843,858 _4030 Shewana3_4031: Shewana3_4031 - ubiquinol oxidase, subunit II (RefSeq), at 4,844,048 to 4,845,076 _4031 Shewana3_4032: Shewana3_4032 - cytochrome c oxidase, subunit I (RefSeq), at 4,845,079 to 4,847,058 _4032 Position (kb) 4844 4845 4846Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10 11at 4843.558 kb on - strandat 4843.764 kb on + strand, within Shewana3_4030at 4843.782 kb on - strand, within Shewana3_4030at 4843.964 kb on - strandat 4843.984 kb on + strandat 4844.009 kb on + strandat 4844.009 kb on + strandat 4844.024 kb on + strandat 4844.031 kb on - strandat 4844.032 kb on - strandat 4844.172 kb on + strand, within Shewana3_4031at 4844.204 kb on + strand, within Shewana3_4031at 4844.403 kb on + strand, within Shewana3_4031at 4844.768 kb on + strand, within Shewana3_4031at 4844.776 kb on - strand, within Shewana3_4031at 4844.786 kb on + strand, within Shewana3_4031at 4844.929 kb on + strand, within Shewana3_4031at 4845.011 kb on + strandat 4845.046 kb on + strandat 4845.102 kb on - strandat 4845.151 kb on - strandat 4845.166 kb on + strandat 4845.166 kb on + strandat 4845.257 kb on + strandat 4845.261 kb on + strandat 4845.294 kb on - strand, within Shewana3_4032at 4845.532 kb on - strand, within Shewana3_4032at 4845.539 kb on + strand, within Shewana3_4032at 4845.621 kb on + strand, within Shewana3_4032at 4845.629 kb on - strand, within Shewana3_4032at 4845.688 kb on + strand, within Shewana3_4032at 4845.696 kb on - strand, within Shewana3_4032at 4845.696 kb on - strand, within Shewana3_4032at 4845.847 kb on - strand, within Shewana3_4032at 4845.918 kb on + strand, within Shewana3_4032at 4845.918 kb on + strand, within Shewana3_4032at 4845.926 kb on - strand, within Shewana3_4032at 4845.926 kb on - strand, within Shewana3_4032

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,843,558 - +4.1
4,843,764 + Shewana3_4030 0.70 +3.2
4,843,782 - Shewana3_4030 0.76 +4.5
4,843,964 - +2.2
4,843,984 + +2.9
4,844,009 + +4.4
4,844,009 + +4.6
4,844,024 + +4.7
4,844,031 - +5.7
4,844,032 - +4.2
4,844,172 + Shewana3_4031 0.12 +3.4
4,844,204 + Shewana3_4031 0.15 +2.0
4,844,403 + Shewana3_4031 0.34 +3.6
4,844,768 + Shewana3_4031 0.70 +0.1
4,844,776 - Shewana3_4031 0.71 +4.5
4,844,786 + Shewana3_4031 0.72 +2.8
4,844,929 + Shewana3_4031 0.86 +3.1
4,845,011 + +2.2
4,845,046 + +3.5
4,845,102 - +4.1
4,845,151 - +2.5
4,845,166 + +3.5
4,845,166 + +3.9
4,845,257 + +3.5
4,845,261 + +3.2
4,845,294 - Shewana3_4032 0.11 +3.5
4,845,532 - Shewana3_4032 0.23 +3.7
4,845,539 + Shewana3_4032 0.23 +1.9
4,845,621 + Shewana3_4032 0.27 -0.6
4,845,629 - Shewana3_4032 0.28 -0.1
4,845,688 + Shewana3_4032 0.31 -0.9
4,845,696 - Shewana3_4032 0.31 +0.7
4,845,696 - Shewana3_4032 0.31 +0.4
4,845,847 - Shewana3_4032 0.39 +1.6
4,845,918 + Shewana3_4032 0.42 +0.4
4,845,918 + Shewana3_4032 0.42 +0.2
4,845,926 - Shewana3_4032 0.43 +1.4
4,845,926 - Shewana3_4032 0.43 +11.1

Or see this region's nucleotide sequence