Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4013 and Shewana3_4014 are separated by 129 nucleotides Shewana3_4014 and Shewana3_4015 are separated by 58 nucleotides Shewana3_4015 and Shewana3_4016 overlap by 1 nucleotides
Shewana3_4013: Shewana3_4013 - RNA-binding S1 domain-containing protein (RefSeq), at 4,817,460 to 4,819,799
_4013
Shewana3_4014: Shewana3_4014 - transcription elongation factor GreB (RefSeq), at 4,819,929 to 4,820,432
_4014
Shewana3_4015: Shewana3_4015 - response regulator receiver modulated diguanylate cyclase (RefSeq), at 4,820,491 to 4,821,438
_4015
Shewana3_4016: Shewana3_4016 - putative PAS/PAC sensor protein (RefSeq), at 4,821,438 to 4,826,318
_4016
Position (kb)
4820
4821
4822 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4819.621 kb on - strand at 4819.632 kb on + strand at 4819.658 kb on + strand at 4819.679 kb on + strand at 4819.706 kb on + strand at 4819.928 kb on - strand at 4820.024 kb on + strand, within Shewana3_4014 at 4820.054 kb on - strand, within Shewana3_4014 at 4820.583 kb on + strand at 4820.693 kb on + strand, within Shewana3_4015 at 4820.725 kb on - strand, within Shewana3_4015 at 4820.735 kb on - strand, within Shewana3_4015 at 4821.155 kb on + strand, within Shewana3_4015 at 4821.303 kb on - strand, within Shewana3_4015 at 4821.479 kb on - strand at 4821.503 kb on - strand at 4821.575 kb on - strand at 4821.575 kb on - strand at 4821.781 kb on - strand at 4821.781 kb on - strand at 4821.823 kb on + strand at 4821.823 kb on + strand at 4821.831 kb on - strand at 4822.004 kb on + strand, within Shewana3_4016 at 4822.036 kb on + strand, within Shewana3_4016 at 4822.069 kb on + strand, within Shewana3_4016 at 4822.077 kb on - strand, within Shewana3_4016 at 4822.338 kb on + strand, within Shewana3_4016 at 4822.346 kb on - strand, within Shewana3_4016 at 4822.379 kb on + strand, within Shewana3_4016 at 4822.387 kb on - strand, within Shewana3_4016
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,819,621 - +0.6 4,819,632 + +1.6 4,819,658 + +0.1 4,819,679 + +0.6 4,819,706 + +0.1 4,819,928 - +2.2 4,820,024 + Shewana3_4014 0.19 +0.1 4,820,054 - Shewana3_4014 0.25 +0.6 4,820,583 + +0.4 4,820,693 + Shewana3_4015 0.21 +0.1 4,820,725 - Shewana3_4015 0.25 -0.0 4,820,735 - Shewana3_4015 0.26 +0.2 4,821,155 + Shewana3_4015 0.70 -0.1 4,821,303 - Shewana3_4015 0.86 -0.6 4,821,479 - +1.4 4,821,503 - +3.7 4,821,575 - -0.3 4,821,575 - -1.1 4,821,781 - -0.1 4,821,781 - -0.1 4,821,823 + -1.5 4,821,823 + +0.6 4,821,831 - -0.1 4,822,004 + Shewana3_4016 0.12 -1.0 4,822,036 + Shewana3_4016 0.12 +1.1 4,822,069 + Shewana3_4016 0.13 -0.4 4,822,077 - Shewana3_4016 0.13 -0.9 4,822,338 + Shewana3_4016 0.18 -0.4 4,822,346 - Shewana3_4016 0.19 +0.3 4,822,379 + Shewana3_4016 0.19 -0.8 4,822,387 - Shewana3_4016 0.19 -0.9
Or see this region's nucleotide sequence