Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3953

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3952 and Shewana3_3953 are separated by 36 nucleotidesShewana3_3953 and Shewana3_3954 are separated by 190 nucleotidesShewana3_3954 and Shewana3_3955 are separated by 96 nucleotides Shewana3_3952: Shewana3_3952 - Sel1 domain-containing protein (RefSeq), at 4,751,369 to 4,752,826 _3952 Shewana3_3953: Shewana3_3953 - hypothetical protein (RefSeq), at 4,752,863 to 4,753,570 _3953 Shewana3_3954: Shewana3_3954 - hypothetical protein (RefSeq), at 4,753,761 to 4,754,288 _3954 Shewana3_3955: Shewana3_3955 - hypothetical protein (RefSeq), at 4,754,385 to 4,754,846 _3955 Position (kb) 4752 4753 4754Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4751.925 kb on + strand, within Shewana3_3952at 4752.084 kb on + strand, within Shewana3_3952at 4752.094 kb on + strand, within Shewana3_3952at 4752.118 kb on - strand, within Shewana3_3952at 4752.123 kb on - strand, within Shewana3_3952at 4752.249 kb on + strand, within Shewana3_3952at 4752.355 kb on - strand, within Shewana3_3952at 4752.381 kb on - strand, within Shewana3_3952at 4752.405 kb on + strand, within Shewana3_3952at 4752.441 kb on - strand, within Shewana3_3952at 4752.441 kb on - strand, within Shewana3_3952at 4752.441 kb on - strand, within Shewana3_3952at 4752.441 kb on - strand, within Shewana3_3952at 4752.571 kb on - strand, within Shewana3_3952at 4752.573 kb on + strand, within Shewana3_3952at 4752.631 kb on + strand, within Shewana3_3952at 4752.631 kb on + strand, within Shewana3_3952at 4752.639 kb on - strand, within Shewana3_3952at 4752.860 kb on + strandat 4752.868 kb on - strandat 4753.019 kb on - strand, within Shewana3_3953at 4753.282 kb on - strand, within Shewana3_3953at 4753.282 kb on - strand, within Shewana3_3953at 4753.397 kb on + strand, within Shewana3_3953at 4753.444 kb on + strand, within Shewana3_3953at 4753.444 kb on + strand, within Shewana3_3953at 4753.452 kb on - strand, within Shewana3_3953at 4753.454 kb on - strand, within Shewana3_3953at 4753.626 kb on + strandat 4753.783 kb on - strandat 4753.785 kb on + strandat 4753.793 kb on - strandat 4753.793 kb on - strandat 4753.941 kb on - strand, within Shewana3_3954at 4753.959 kb on + strand, within Shewana3_3954at 4753.977 kb on + strand, within Shewana3_3954at 4754.138 kb on - strand, within Shewana3_3954at 4754.138 kb on - strand, within Shewana3_3954at 4754.140 kb on + strand, within Shewana3_3954at 4754.184 kb on + strand, within Shewana3_3954at 4754.309 kb on - strandat 4754.360 kb on + strandat 4754.365 kb on + strandat 4754.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,751,925 + Shewana3_3952 0.38 -2.2
4,752,084 + Shewana3_3952 0.49 -2.8
4,752,094 + Shewana3_3952 0.50 -2.3
4,752,118 - Shewana3_3952 0.51 -1.9
4,752,123 - Shewana3_3952 0.52 -1.6
4,752,249 + Shewana3_3952 0.60 -1.9
4,752,355 - Shewana3_3952 0.68 -1.8
4,752,381 - Shewana3_3952 0.69 -1.9
4,752,405 + Shewana3_3952 0.71 -1.7
4,752,441 - Shewana3_3952 0.74 -2.1
4,752,441 - Shewana3_3952 0.74 -2.7
4,752,441 - Shewana3_3952 0.74 -0.3
4,752,441 - Shewana3_3952 0.74 -1.4
4,752,571 - Shewana3_3952 0.82 -1.6
4,752,573 + Shewana3_3952 0.83 -2.8
4,752,631 + Shewana3_3952 0.87 -1.8
4,752,631 + Shewana3_3952 0.87 -2.9
4,752,639 - Shewana3_3952 0.87 -3.6
4,752,860 + +2.2
4,752,868 - -0.8
4,753,019 - Shewana3_3953 0.22 -1.9
4,753,282 - Shewana3_3953 0.59 -0.9
4,753,282 - Shewana3_3953 0.59 -1.3
4,753,397 + Shewana3_3953 0.75 +1.2
4,753,444 + Shewana3_3953 0.82 +0.3
4,753,444 + Shewana3_3953 0.82 +1.8
4,753,452 - Shewana3_3953 0.83 +1.5
4,753,454 - Shewana3_3953 0.83 -0.4
4,753,626 + -0.9
4,753,783 - -0.1
4,753,785 + -0.4
4,753,793 - +0.0
4,753,793 - -1.6
4,753,941 - Shewana3_3954 0.34 -0.6
4,753,959 + Shewana3_3954 0.38 +0.1
4,753,977 + Shewana3_3954 0.41 -0.8
4,754,138 - Shewana3_3954 0.71 -0.9
4,754,138 - Shewana3_3954 0.71 +0.1
4,754,140 + Shewana3_3954 0.72 -0.4
4,754,184 + Shewana3_3954 0.80 +0.2
4,754,309 - -1.2
4,754,360 + -0.4
4,754,365 + -0.4
4,754,379 - +0.0

Or see this region's nucleotide sequence