Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3816

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3815 and Shewana3_3816 are separated by 176 nucleotidesShewana3_3816 and Shewana3_3817 are separated by 83 nucleotides Shewana3_3815: Shewana3_3815 - CaCA family Na(+)/Ca(+) antiporter (RefSeq), at 4,582,169 to 4,583,119 _3815 Shewana3_3816: Shewana3_3816 - TPR repeat-containing protein (RefSeq), at 4,583,296 to 4,584,000 _3816 Shewana3_3817: Shewana3_3817 - putative signal transduction histidine kinase (RefSeq), at 4,584,084 to 4,585,163 _3817 Position (kb) 4583 4584 4585Strain fitness (log2 ratio) -1 0 1 2 3at 4582.383 kb on - strand, within Shewana3_3815at 4582.817 kb on - strand, within Shewana3_3815at 4582.889 kb on - strand, within Shewana3_3815at 4583.007 kb on + strand, within Shewana3_3815at 4583.071 kb on - strandat 4583.326 kb on + strandat 4583.466 kb on - strand, within Shewana3_3816at 4583.531 kb on - strand, within Shewana3_3816at 4583.838 kb on - strand, within Shewana3_3816at 4584.095 kb on - strandat 4584.439 kb on + strand, within Shewana3_3817at 4584.439 kb on + strand, within Shewana3_3817at 4584.577 kb on - strand, within Shewana3_3817at 4584.782 kb on - strand, within Shewana3_3817

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,582,383 - Shewana3_3815 0.23 +3.3
4,582,817 - Shewana3_3815 0.68 +1.8
4,582,889 - Shewana3_3815 0.76 +2.9
4,583,007 + Shewana3_3815 0.88 +3.2
4,583,071 - +2.6
4,583,326 + +0.3
4,583,466 - Shewana3_3816 0.24 -1.1
4,583,531 - Shewana3_3816 0.33 -0.3
4,583,838 - Shewana3_3816 0.77 -0.7
4,584,095 - -0.1
4,584,439 + Shewana3_3817 0.33 -0.5
4,584,439 + Shewana3_3817 0.33 -0.2
4,584,577 - Shewana3_3817 0.46 +0.8
4,584,782 - Shewana3_3817 0.65 +0.3

Or see this region's nucleotide sequence