Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3788 and Shewana3_3789 are separated by 27 nucleotides Shewana3_3789 and Shewana3_3790 are separated by 11 nucleotides
Shewana3_3788: Shewana3_3788 - SNF2-related protein (RefSeq), at 4,549,096 to 4,552,542
_3788
Shewana3_3789: Shewana3_3789 - hypothetical protein (RefSeq), at 4,552,570 to 4,553,277
_3789
Shewana3_3790: Shewana3_3790 - HsdR family type I site-specific deoxyribonuclease (RefSeq), at 4,553,289 to 4,556,450
_3790
Position (kb)
4552
4553
4554 Strain fitness (log2 ratio)
-2
-1
0
1 at 4551.702 kb on + strand, within Shewana3_3788 at 4551.710 kb on - strand, within Shewana3_3788 at 4551.710 kb on - strand, within Shewana3_3788 at 4552.028 kb on + strand, within Shewana3_3788 at 4552.050 kb on + strand, within Shewana3_3788 at 4552.164 kb on - strand, within Shewana3_3788 at 4552.173 kb on + strand, within Shewana3_3788 at 4552.195 kb on - strand, within Shewana3_3788 at 4552.294 kb on + strand at 4552.356 kb on + strand at 4552.356 kb on + strand at 4552.356 kb on + strand at 4552.356 kb on + strand at 4552.356 kb on + strand at 4552.356 kb on + strand at 4552.356 kb on + strand at 4552.364 kb on - strand at 4552.364 kb on - strand at 4552.364 kb on - strand at 4552.364 kb on - strand at 4552.364 kb on - strand at 4552.364 kb on - strand at 4552.492 kb on - strand at 4552.692 kb on + strand, within Shewana3_3789 at 4552.770 kb on + strand, within Shewana3_3789 at 4552.770 kb on + strand, within Shewana3_3789 at 4552.778 kb on - strand, within Shewana3_3789 at 4552.836 kb on - strand, within Shewana3_3789 at 4552.994 kb on - strand, within Shewana3_3789 at 4553.193 kb on + strand, within Shewana3_3789 at 4553.201 kb on - strand, within Shewana3_3789 at 4553.457 kb on + strand at 4553.475 kb on + strand at 4553.591 kb on + strand at 4553.654 kb on + strand, within Shewana3_3790 at 4553.722 kb on + strand, within Shewana3_3790 at 4553.878 kb on - strand, within Shewana3_3790 at 4553.927 kb on + strand, within Shewana3_3790 at 4554.015 kb on - strand, within Shewana3_3790 at 4554.165 kb on - strand, within Shewana3_3790 at 4554.245 kb on + strand, within Shewana3_3790
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,551,702 + Shewana3_3788 0.76 +0.8 4,551,710 - Shewana3_3788 0.76 -1.3 4,551,710 - Shewana3_3788 0.76 +0.2 4,552,028 + Shewana3_3788 0.85 -0.1 4,552,050 + Shewana3_3788 0.86 -1.3 4,552,164 - Shewana3_3788 0.89 -0.1 4,552,173 + Shewana3_3788 0.89 +0.1 4,552,195 - Shewana3_3788 0.90 +0.4 4,552,294 + +0.6 4,552,356 + +0.4 4,552,356 + +0.0 4,552,356 + -0.8 4,552,356 + -0.1 4,552,356 + +0.4 4,552,356 + +0.1 4,552,356 + +0.1 4,552,364 - -1.1 4,552,364 - -0.8 4,552,364 - -1.2 4,552,364 - -0.2 4,552,364 - -2.1 4,552,364 - -0.6 4,552,492 - -0.6 4,552,692 + Shewana3_3789 0.17 +1.4 4,552,770 + Shewana3_3789 0.28 +0.3 4,552,770 + Shewana3_3789 0.28 +0.3 4,552,778 - Shewana3_3789 0.29 -0.0 4,552,836 - Shewana3_3789 0.38 -0.0 4,552,994 - Shewana3_3789 0.60 -0.8 4,553,193 + Shewana3_3789 0.88 -0.7 4,553,201 - Shewana3_3789 0.89 -0.6 4,553,457 + -1.1 4,553,475 + +0.1 4,553,591 + -0.8 4,553,654 + Shewana3_3790 0.12 +0.2 4,553,722 + Shewana3_3790 0.14 +1.2 4,553,878 - Shewana3_3790 0.19 +0.4 4,553,927 + Shewana3_3790 0.20 -0.5 4,554,015 - Shewana3_3790 0.23 +0.4 4,554,165 - Shewana3_3790 0.28 -0.7 4,554,245 + Shewana3_3790 0.30 -0.0
Or see this region's nucleotide sequence