Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3737

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3735 and Shewana3_3736 are separated by 60 nucleotidesShewana3_3736 and Shewana3_3737 are separated by 27 nucleotidesShewana3_3737 and lpxC are separated by 13 nucleotides Shewana3_3735: Shewana3_3735 - preprotein translocase subunit SecA (RefSeq), at 4,489,288 to 4,492,014 _3735 Shewana3_3736: Shewana3_3736 - peptidase M23B (RefSeq), at 4,492,075 to 4,492,974 _3736 Shewana3_3737: Shewana3_3737 - hypothetical protein (RefSeq), at 4,493,002 to 4,493,448 _3737 Shewana3_3738: lpxC - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (RefSeq), at 4,493,462 to 4,494,382 lpxC Position (kb) 4493 4494Strain fitness (log2 ratio) -1 0 1at 4492.476 kb on - strand, within Shewana3_3736at 4492.836 kb on - strand, within Shewana3_3736at 4492.962 kb on + strandat 4493.345 kb on + strand, within Shewana3_3737

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,492,476 - Shewana3_3736 0.45 -0.7
4,492,836 - Shewana3_3736 0.85 -0.0
4,492,962 + -0.1
4,493,345 + Shewana3_3737 0.77 -1.6

Or see this region's nucleotide sequence