Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3680 and Shewana3_3681 are separated by 412 nucleotides Shewana3_3681 and Shewana3_3682 are separated by 59 nucleotides
Shewana3_3680: Shewana3_3680 - Uridine phosphorylase (EC 2.4.2.3) (from data) , at 4,419,221 to 4,419,979
_3680
Shewana3_3681: Shewana3_3681 - hypothetical protein (RefSeq), at 4,420,392 to 4,420,604
_3681
Shewana3_3682: Shewana3_3682 - ornithine decarboxylase (RefSeq), at 4,420,664 to 4,421,839
_3682
Position (kb)
4420
4421 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7 at 4419.414 kb on + strand, within Shewana3_3680 at 4419.422 kb on - strand, within Shewana3_3680 at 4419.472 kb on + strand, within Shewana3_3680 at 4419.493 kb on - strand, within Shewana3_3680 at 4419.613 kb on - strand, within Shewana3_3680 at 4419.694 kb on - strand, within Shewana3_3680 at 4419.705 kb on - strand, within Shewana3_3680 at 4419.705 kb on - strand, within Shewana3_3680 at 4419.705 kb on - strand, within Shewana3_3680 at 4419.804 kb on + strand, within Shewana3_3680 at 4419.864 kb on + strand, within Shewana3_3680 at 4420.055 kb on - strand at 4420.061 kb on - strand at 4420.207 kb on - strand at 4420.280 kb on + strand at 4420.280 kb on + strand at 4420.280 kb on + strand at 4420.338 kb on + strand at 4420.346 kb on - strand at 4420.346 kb on - strand at 4420.533 kb on + strand, within Shewana3_3681 at 4420.765 kb on - strand at 4420.788 kb on + strand, within Shewana3_3682 at 4420.813 kb on - strand, within Shewana3_3682 at 4420.999 kb on + strand, within Shewana3_3682 at 4421.018 kb on - strand, within Shewana3_3682 at 4421.265 kb on - strand, within Shewana3_3682 at 4421.297 kb on + strand, within Shewana3_3682 at 4421.331 kb on - strand, within Shewana3_3682 at 4421.388 kb on - strand, within Shewana3_3682 at 4421.423 kb on - strand, within Shewana3_3682
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,419,414 + Shewana3_3680 0.25 -0.0 4,419,422 - Shewana3_3680 0.26 +0.6 4,419,472 + Shewana3_3680 0.33 -0.5 4,419,493 - Shewana3_3680 0.36 +0.9 4,419,613 - Shewana3_3680 0.52 +7.4 4,419,694 - Shewana3_3680 0.62 +0.3 4,419,705 - Shewana3_3680 0.64 +0.9 4,419,705 - Shewana3_3680 0.64 +0.3 4,419,705 - Shewana3_3680 0.64 +0.1 4,419,804 + Shewana3_3680 0.77 -0.9 4,419,864 + Shewana3_3680 0.85 +0.4 4,420,055 - +0.6 4,420,061 - +0.2 4,420,207 - +0.4 4,420,280 + -0.7 4,420,280 + -0.7 4,420,280 + +0.1 4,420,338 + +0.1 4,420,346 - -0.0 4,420,346 - +0.3 4,420,533 + Shewana3_3681 0.66 +0.5 4,420,765 - +0.1 4,420,788 + Shewana3_3682 0.11 -0.1 4,420,813 - Shewana3_3682 0.13 +0.1 4,420,999 + Shewana3_3682 0.28 +1.0 4,421,018 - Shewana3_3682 0.30 -0.3 4,421,265 - Shewana3_3682 0.51 -0.3 4,421,297 + Shewana3_3682 0.54 -0.2 4,421,331 - Shewana3_3682 0.57 +0.3 4,421,388 - Shewana3_3682 0.62 +0.0 4,421,423 - Shewana3_3682 0.65 -0.2
Or see this region's nucleotide sequence