Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3672

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3671 and Shewana3_3672 are separated by 103 nucleotidesShewana3_3672 and argS are separated by 111 nucleotides Shewana3_3671: Shewana3_3671 - response regulator receiver protein (RefSeq), at 4,408,742 to 4,409,917 _3671 Shewana3_3672: Shewana3_3672 - primosomal protein N' (RefSeq), at 4,410,021 to 4,412,231 _3672 Shewana3_3673: argS - arginyl-tRNA synthetase (RefSeq), at 4,412,343 to 4,414,088 argS Position (kb) 4410 4411 4412 4413Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 4409.061 kb on + strand, within Shewana3_3671at 4409.088 kb on + strand, within Shewana3_3671at 4409.088 kb on + strand, within Shewana3_3671at 4409.157 kb on + strand, within Shewana3_3671at 4409.172 kb on + strand, within Shewana3_3671at 4409.172 kb on + strand, within Shewana3_3671at 4409.180 kb on - strand, within Shewana3_3671at 4409.180 kb on - strand, within Shewana3_3671at 4409.202 kb on + strand, within Shewana3_3671at 4409.210 kb on - strand, within Shewana3_3671at 4409.230 kb on - strand, within Shewana3_3671at 4409.230 kb on - strand, within Shewana3_3671at 4409.307 kb on + strand, within Shewana3_3671at 4409.307 kb on + strand, within Shewana3_3671at 4409.549 kb on + strand, within Shewana3_3671at 4409.653 kb on + strand, within Shewana3_3671at 4409.654 kb on - strand, within Shewana3_3671at 4409.666 kb on + strand, within Shewana3_3671at 4409.666 kb on + strand, within Shewana3_3671at 4409.674 kb on - strand, within Shewana3_3671at 4409.674 kb on - strand, within Shewana3_3671at 4409.694 kb on + strand, within Shewana3_3671at 4409.860 kb on + strandat 4409.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,409,061 + Shewana3_3671 0.27 +0.0
4,409,088 + Shewana3_3671 0.29 -0.2
4,409,088 + Shewana3_3671 0.29 -0.1
4,409,157 + Shewana3_3671 0.35 -0.2
4,409,172 + Shewana3_3671 0.37 +3.5
4,409,172 + Shewana3_3671 0.37 -0.5
4,409,180 - Shewana3_3671 0.37 +3.2
4,409,180 - Shewana3_3671 0.37 +0.5
4,409,202 + Shewana3_3671 0.39 +5.5
4,409,210 - Shewana3_3671 0.40 +0.2
4,409,230 - Shewana3_3671 0.41 -0.5
4,409,230 - Shewana3_3671 0.41 -0.8
4,409,307 + Shewana3_3671 0.48 +0.2
4,409,307 + Shewana3_3671 0.48 +1.2
4,409,549 + Shewana3_3671 0.69 -1.2
4,409,653 + Shewana3_3671 0.77 -0.1
4,409,654 - Shewana3_3671 0.78 -0.2
4,409,666 + Shewana3_3671 0.79 +0.0
4,409,666 + Shewana3_3671 0.79 -0.1
4,409,674 - Shewana3_3671 0.79 +0.0
4,409,674 - Shewana3_3671 0.79 -1.2
4,409,694 + Shewana3_3671 0.81 -0.6
4,409,860 + -0.2
4,409,932 - +1.1

Or see this region's nucleotide sequence