Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3667 and Shewana3_3668 are separated by 238 nucleotides Shewana3_3668 and Shewana3_3669 are separated by 213 nucleotides
Shewana3_3667: Shewana3_3667 - biogenesis protein MshI (RefSeq), at 4,403,367 to 4,404,245
_3667
Shewana3_3668: Shewana3_3668 - regulatory protein CsrD (RefSeq), at 4,404,484 to 4,406,394
_3668
Shewana3_3669: Shewana3_3669 - malic enzyme, NAD-binding (RefSeq), at 4,406,608 to 4,407,852
_3669
Position (kb)
4404
4405
4406
4407 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4403.489 kb on + strand, within Shewana3_3667 at 4403.497 kb on - strand, within Shewana3_3667 at 4403.625 kb on - strand, within Shewana3_3667 at 4403.631 kb on - strand, within Shewana3_3667 at 4403.638 kb on + strand, within Shewana3_3667 at 4403.660 kb on + strand, within Shewana3_3667 at 4403.662 kb on + strand, within Shewana3_3667 at 4403.677 kb on + strand, within Shewana3_3667 at 4403.700 kb on + strand, within Shewana3_3667 at 4403.726 kb on - strand, within Shewana3_3667 at 4403.857 kb on + strand, within Shewana3_3667 at 4403.868 kb on - strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.957 kb on - strand, within Shewana3_3667 at 4403.957 kb on - strand, within Shewana3_3667 at 4404.109 kb on - strand, within Shewana3_3667 at 4404.129 kb on + strand, within Shewana3_3667 at 4404.151 kb on + strand, within Shewana3_3667 at 4404.173 kb on + strand at 4404.181 kb on - strand at 4404.181 kb on - strand at 4404.393 kb on - strand at 4404.592 kb on - strand at 4404.592 kb on - strand at 4404.695 kb on - strand, within Shewana3_3668 at 4404.755 kb on + strand, within Shewana3_3668 at 4404.785 kb on + strand, within Shewana3_3668 at 4404.792 kb on + strand, within Shewana3_3668 at 4404.792 kb on + strand, within Shewana3_3668 at 4404.797 kb on + strand, within Shewana3_3668 at 4404.805 kb on - strand, within Shewana3_3668 at 4404.900 kb on + strand, within Shewana3_3668 at 4404.908 kb on - strand, within Shewana3_3668 at 4405.116 kb on + strand, within Shewana3_3668 at 4405.558 kb on + strand, within Shewana3_3668 at 4405.624 kb on + strand, within Shewana3_3668 at 4405.767 kb on + strand, within Shewana3_3668 at 4405.767 kb on + strand, within Shewana3_3668 at 4405.775 kb on - strand, within Shewana3_3668 at 4405.775 kb on - strand, within Shewana3_3668 at 4405.775 kb on - strand, within Shewana3_3668 at 4405.847 kb on + strand, within Shewana3_3668 at 4406.078 kb on + strand, within Shewana3_3668 at 4406.078 kb on + strand, within Shewana3_3668 at 4406.086 kb on - strand, within Shewana3_3668 at 4406.118 kb on - strand, within Shewana3_3668 at 4406.197 kb on + strand, within Shewana3_3668 at 4406.509 kb on - strand at 4406.583 kb on + strand at 4406.592 kb on - strand at 4406.592 kb on - strand at 4406.623 kb on + strand at 4406.704 kb on + strand at 4406.820 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4406.870 kb on - strand, within Shewana3_3669 at 4407.203 kb on + strand, within Shewana3_3669 at 4407.296 kb on + strand, within Shewana3_3669
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,403,489 + Shewana3_3667 0.14 +1.4 4,403,497 - Shewana3_3667 0.15 -0.2 4,403,625 - Shewana3_3667 0.29 -0.2 4,403,631 - Shewana3_3667 0.30 +0.6 4,403,638 + Shewana3_3667 0.31 -0.6 4,403,660 + Shewana3_3667 0.33 -0.4 4,403,662 + Shewana3_3667 0.34 -1.7 4,403,677 + Shewana3_3667 0.35 -1.4 4,403,700 + Shewana3_3667 0.38 +2.1 4,403,726 - Shewana3_3667 0.41 -1.3 4,403,857 + Shewana3_3667 0.56 +2.1 4,403,868 - Shewana3_3667 0.57 -0.7 4,403,949 + Shewana3_3667 0.66 -0.1 4,403,949 + Shewana3_3667 0.66 -0.8 4,403,949 + Shewana3_3667 0.66 -0.7 4,403,957 - Shewana3_3667 0.67 +0.2 4,403,957 - Shewana3_3667 0.67 +0.2 4,404,109 - Shewana3_3667 0.84 -1.0 4,404,129 + Shewana3_3667 0.87 -0.9 4,404,151 + Shewana3_3667 0.89 +0.1 4,404,173 + -1.9 4,404,181 - -0.1 4,404,181 - -0.4 4,404,393 - -0.7 4,404,592 - -2.1 4,404,592 - -1.6 4,404,695 - Shewana3_3668 0.11 +0.4 4,404,755 + Shewana3_3668 0.14 -1.5 4,404,785 + Shewana3_3668 0.16 -2.8 4,404,792 + Shewana3_3668 0.16 -0.6 4,404,792 + Shewana3_3668 0.16 -2.0 4,404,797 + Shewana3_3668 0.16 -0.8 4,404,805 - Shewana3_3668 0.17 -1.8 4,404,900 + Shewana3_3668 0.22 -0.3 4,404,908 - Shewana3_3668 0.22 +0.9 4,405,116 + Shewana3_3668 0.33 -0.6 4,405,558 + Shewana3_3668 0.56 -2.0 4,405,624 + Shewana3_3668 0.60 -1.8 4,405,767 + Shewana3_3668 0.67 -1.8 4,405,767 + Shewana3_3668 0.67 -0.9 4,405,775 - Shewana3_3668 0.68 +2.7 4,405,775 - Shewana3_3668 0.68 -1.6 4,405,775 - Shewana3_3668 0.68 +1.4 4,405,847 + Shewana3_3668 0.71 -0.8 4,406,078 + Shewana3_3668 0.83 +0.4 4,406,078 + Shewana3_3668 0.83 -1.6 4,406,086 - Shewana3_3668 0.84 +3.9 4,406,118 - Shewana3_3668 0.86 -0.6 4,406,197 + Shewana3_3668 0.90 -0.3 4,406,509 - +0.4 4,406,583 + -0.9 4,406,592 - +0.0 4,406,592 - -0.1 4,406,623 + +1.8 4,406,704 + +1.1 4,406,820 - Shewana3_3669 0.17 -1.1 4,406,870 - Shewana3_3669 0.21 +1.2 4,406,870 - Shewana3_3669 0.21 -0.5 4,406,870 - Shewana3_3669 0.21 -3.2 4,406,870 - Shewana3_3669 0.21 -1.1 4,406,870 - Shewana3_3669 0.21 -0.9 4,407,203 + Shewana3_3669 0.48 -1.3 4,407,296 + Shewana3_3669 0.55 -3.1
Or see this region's nucleotide sequence