Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3644

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3643 and Shewana3_3644 overlap by 1 nucleotidesShewana3_3644 and Shewana3_3645 are separated by 135 nucleotidesShewana3_3645 and Shewana3_3646 are separated by 2 nucleotides Shewana3_3643: Shewana3_3643 - hypothetical protein (RefSeq), at 4,374,994 to 4,379,247 _3643 Shewana3_3644: Shewana3_3644 - ribonuclease G (RefSeq), at 4,379,247 to 4,380,755 _3644 Shewana3_3645: Shewana3_3645 - maf protein (RefSeq), at 4,380,891 to 4,381,475 _3645 Shewana3_3646: Shewana3_3646 - rod shape-determining protein MreD (RefSeq), at 4,381,478 to 4,381,966 _3646 Position (kb) 4379 4380 4381Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4378.659 kb on + strand, within Shewana3_3643at 4378.954 kb on + strandat 4378.964 kb on + strandat 4378.964 kb on + strandat 4379.367 kb on + strandat 4379.367 kb on + strandat 4379.375 kb on - strandat 4379.375 kb on - strandat 4379.375 kb on - strandat 4379.375 kb on - strandat 4379.375 kb on - strandat 4379.607 kb on - strand, within Shewana3_3644at 4379.737 kb on + strand, within Shewana3_3644at 4380.078 kb on - strand, within Shewana3_3644at 4380.128 kb on + strand, within Shewana3_3644at 4380.136 kb on - strand, within Shewana3_3644at 4380.303 kb on + strand, within Shewana3_3644at 4380.671 kb on - strandat 4380.885 kb on - strandat 4381.131 kb on - strand, within Shewana3_3645at 4381.161 kb on - strand, within Shewana3_3645at 4381.247 kb on + strand, within Shewana3_3645at 4381.328 kb on + strand, within Shewana3_3645at 4381.328 kb on + strand, within Shewana3_3645at 4381.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,378,659 + Shewana3_3643 0.86 -1.6
4,378,954 + +0.1
4,378,964 + +2.1
4,378,964 + -1.1
4,379,367 + -0.7
4,379,367 + -0.5
4,379,375 - -3.0
4,379,375 - +0.2
4,379,375 - -0.3
4,379,375 - -1.0
4,379,375 - +0.8
4,379,607 - Shewana3_3644 0.24 -2.8
4,379,737 + Shewana3_3644 0.32 +0.9
4,380,078 - Shewana3_3644 0.55 -1.5
4,380,128 + Shewana3_3644 0.58 +1.4
4,380,136 - Shewana3_3644 0.59 -1.5
4,380,303 + Shewana3_3644 0.70 +1.7
4,380,671 - +0.2
4,380,885 - -0.3
4,381,131 - Shewana3_3645 0.41 +0.7
4,381,161 - Shewana3_3645 0.46 +0.6
4,381,247 + Shewana3_3645 0.61 -1.9
4,381,328 + Shewana3_3645 0.75 +1.4
4,381,328 + Shewana3_3645 0.75 -1.7
4,381,473 - -0.8

Or see this region's nucleotide sequence