Experiment: Paraquat dichloride 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3606 and Shewana3_3607 are separated by 10 nucleotides Shewana3_3607 and Shewana3_3608 are separated by 189 nucleotides Shewana3_3608 and Shewana3_3609 are separated by 16 nucleotides
Shewana3_3606: Shewana3_3606 - cytochrome c family protein (RefSeq), at 4,330,531 to 4,331,589
_3606
Shewana3_3607: Shewana3_3607 - cytochrome c family protein (RefSeq), at 4,331,600 to 4,332,226
_3607
Shewana3_3608: Shewana3_3608 - response regulator receiver protein (RefSeq), at 4,332,416 to 4,333,444
_3608
Shewana3_3609: Shewana3_3609 - secretion protein HlyD family protein (RefSeq), at 4,333,461 to 4,334,519
_3609
Position (kb)
4332
4333
4334 Strain fitness (log2 ratio)
-1
0
1
2 at 4331.492 kb on - strand at 4331.689 kb on - strand, within Shewana3_3607 at 4331.818 kb on - strand, within Shewana3_3607 at 4331.828 kb on - strand, within Shewana3_3607 at 4331.907 kb on + strand, within Shewana3_3607 at 4332.035 kb on + strand, within Shewana3_3607 at 4332.164 kb on + strand at 4332.164 kb on + strand at 4332.172 kb on - strand at 4332.172 kb on - strand at 4332.291 kb on - strand at 4332.381 kb on - strand at 4332.455 kb on + strand at 4332.599 kb on + strand, within Shewana3_3608 at 4332.604 kb on + strand, within Shewana3_3608 at 4332.632 kb on + strand, within Shewana3_3608 at 4332.651 kb on + strand, within Shewana3_3608 at 4332.691 kb on - strand, within Shewana3_3608 at 4332.696 kb on - strand, within Shewana3_3608 at 4332.798 kb on + strand, within Shewana3_3608 at 4332.801 kb on - strand, within Shewana3_3608 at 4333.360 kb on + strand at 4333.360 kb on + strand at 4333.360 kb on + strand at 4333.497 kb on - strand at 4333.513 kb on - strand at 4333.607 kb on + strand, within Shewana3_3609 at 4333.607 kb on + strand, within Shewana3_3609 at 4333.607 kb on + strand, within Shewana3_3609 at 4333.647 kb on + strand, within Shewana3_3609 at 4333.927 kb on + strand, within Shewana3_3609 at 4334.011 kb on - strand, within Shewana3_3609 at 4334.052 kb on - strand, within Shewana3_3609 at 4334.246 kb on - strand, within Shewana3_3609 at 4334.260 kb on + strand, within Shewana3_3609
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml remove 4,331,492 - -0.5 4,331,689 - Shewana3_3607 0.14 -0.1 4,331,818 - Shewana3_3607 0.35 -0.8 4,331,828 - Shewana3_3607 0.36 +0.2 4,331,907 + Shewana3_3607 0.49 -0.2 4,332,035 + Shewana3_3607 0.69 -0.1 4,332,164 + +0.5 4,332,164 + +1.4 4,332,172 - +1.2 4,332,172 - +0.9 4,332,291 - -1.4 4,332,381 - -0.7 4,332,455 + +0.5 4,332,599 + Shewana3_3608 0.18 +0.9 4,332,604 + Shewana3_3608 0.18 -0.0 4,332,632 + Shewana3_3608 0.21 +2.7 4,332,651 + Shewana3_3608 0.23 +0.5 4,332,691 - Shewana3_3608 0.27 -0.2 4,332,696 - Shewana3_3608 0.27 +0.8 4,332,798 + Shewana3_3608 0.37 +0.3 4,332,801 - Shewana3_3608 0.37 +0.5 4,333,360 + -0.5 4,333,360 + +0.1 4,333,360 + -0.1 4,333,497 - +0.0 4,333,513 - -0.5 4,333,607 + Shewana3_3609 0.14 -0.2 4,333,607 + Shewana3_3609 0.14 -1.2 4,333,607 + Shewana3_3609 0.14 -0.5 4,333,647 + Shewana3_3609 0.18 +1.1 4,333,927 + Shewana3_3609 0.44 -0.8 4,334,011 - Shewana3_3609 0.52 +0.2 4,334,052 - Shewana3_3609 0.56 -0.5 4,334,246 - Shewana3_3609 0.74 -0.5 4,334,260 + Shewana3_3609 0.75 +0.4
Or see this region's nucleotide sequence