Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3518

Experiment: Paraquat dichloride 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3517 and Shewana3_3518 are separated by 218 nucleotidesShewana3_3518 and Shewana3_3519 are separated by 6 nucleotidesShewana3_3519 and Shewana3_3520 are separated by 71 nucleotides Shewana3_3517: Shewana3_3517 - extracellular solute-binding protein (RefSeq), at 4,218,778 to 4,219,785 _3517 Shewana3_3518: Shewana3_3518 - hypothetical protein (RefSeq), at 4,220,004 to 4,220,426 _3518 Shewana3_3519: Shewana3_3519 - glutathione S-transferase domain-containing protein (RefSeq), at 4,220,433 to 4,221,029 _3519 Shewana3_3520: Shewana3_3520 - oxidoreductase FAD/NAD(P)-binding subunit (RefSeq), at 4,221,101 to 4,221,850 _3520 Position (kb) 4220 4221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4219.132 kb on + strand, within Shewana3_3517at 4219.186 kb on - strand, within Shewana3_3517at 4219.186 kb on - strand, within Shewana3_3517at 4219.253 kb on + strand, within Shewana3_3517at 4219.308 kb on - strand, within Shewana3_3517at 4219.319 kb on - strand, within Shewana3_3517at 4219.377 kb on - strand, within Shewana3_3517at 4219.426 kb on + strand, within Shewana3_3517at 4219.581 kb on - strand, within Shewana3_3517at 4220.050 kb on + strand, within Shewana3_3518at 4220.050 kb on + strand, within Shewana3_3518at 4220.567 kb on - strand, within Shewana3_3519at 4220.576 kb on - strand, within Shewana3_3519at 4220.612 kb on - strand, within Shewana3_3519at 4220.659 kb on + strand, within Shewana3_3519at 4220.724 kb on + strand, within Shewana3_3519at 4220.902 kb on - strand, within Shewana3_3519at 4220.995 kb on + strandat 4221.051 kb on - strandat 4221.186 kb on + strand, within Shewana3_3520at 4221.274 kb on + strand, within Shewana3_3520at 4221.341 kb on - strand, within Shewana3_3520at 4221.352 kb on + strand, within Shewana3_3520at 4221.369 kb on + strand, within Shewana3_3520at 4221.369 kb on + strand, within Shewana3_3520at 4221.377 kb on - strand, within Shewana3_3520at 4221.377 kb on - strand, within Shewana3_3520at 4221.409 kb on - strand, within Shewana3_3520at 4221.426 kb on - strand, within Shewana3_3520

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.008 mg/ml
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4,219,132 + Shewana3_3517 0.35 -1.2
4,219,186 - Shewana3_3517 0.40 -0.1
4,219,186 - Shewana3_3517 0.40 -0.6
4,219,253 + Shewana3_3517 0.47 -0.1
4,219,308 - Shewana3_3517 0.53 -0.4
4,219,319 - Shewana3_3517 0.54 -0.2
4,219,377 - Shewana3_3517 0.59 -0.1
4,219,426 + Shewana3_3517 0.64 -1.7
4,219,581 - Shewana3_3517 0.80 -1.2
4,220,050 + Shewana3_3518 0.11 -0.6
4,220,050 + Shewana3_3518 0.11 +0.3
4,220,567 - Shewana3_3519 0.22 +3.3
4,220,576 - Shewana3_3519 0.24 -0.1
4,220,612 - Shewana3_3519 0.30 +0.2
4,220,659 + Shewana3_3519 0.38 -2.0
4,220,724 + Shewana3_3519 0.49 -0.0
4,220,902 - Shewana3_3519 0.79 +1.1
4,220,995 + -1.5
4,221,051 - -0.4
4,221,186 + Shewana3_3520 0.11 +0.6
4,221,274 + Shewana3_3520 0.23 +0.6
4,221,341 - Shewana3_3520 0.32 -0.2
4,221,352 + Shewana3_3520 0.33 -0.3
4,221,369 + Shewana3_3520 0.36 -0.3
4,221,369 + Shewana3_3520 0.36 -0.2
4,221,377 - Shewana3_3520 0.37 -1.4
4,221,377 - Shewana3_3520 0.37 -0.5
4,221,409 - Shewana3_3520 0.41 -1.7
4,221,426 - Shewana3_3520 0.43 +1.0

Or see this region's nucleotide sequence